Wall clock time and date at job start Mon Mar 30 2020 03:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.70894 * 2 1 4 4 C 1.53303 * 109.70968 * 239.41647 * 2 1 3 5 5 N 1.46827 * 109.39613 * 186.47897 * 4 2 1 6 6 C 1.46903 * 110.99723 * 189.75113 * 5 4 2 7 7 C 1.53000 * 109.47252 * 170.00080 * 6 5 4 8 8 C 1.53001 * 109.47355 * 180.02562 * 7 6 5 9 9 C 1.50694 * 109.47168 * 179.97438 * 8 7 6 10 10 H 1.08000 * 120.00563 * 359.97438 * 9 8 7 11 11 C 1.37885 * 119.99902 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99913 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99854 * 179.72538 * 11 9 8 14 14 H 1.48504 * 109.47032 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.46816 * 120.00323 * 13 11 9 16 16 H 1.48495 * 109.46630 * 240.00111 * 13 11 9 17 17 C 1.46828 * 111.56802 * 65.38761 * 5 4 2 18 18 C 1.53301 * 109.39946 * 294.60661 * 17 5 4 19 19 H 1.08996 * 109.70942 * 173.47816 * 18 17 5 20 20 C 1.53001 * 109.70998 * 294.10907 * 18 17 5 21 21 C 1.51434 * 108.23833 * 53.79492 * 18 17 5 22 22 O 1.20764 * 121.11022 * 130.99439 * 21 18 17 23 23 H 1.09003 * 109.47248 * 180.58612 * 1 2 3 24 24 H 1.08995 * 109.47060 * 300.58275 * 1 2 3 25 25 H 1.09000 * 109.47236 * 60.58540 * 1 2 3 26 26 H 1.08993 * 109.48488 * 66.49756 * 4 2 1 27 27 H 1.09000 * 109.48077 * 306.45031 * 4 2 1 28 28 H 1.09000 * 109.47311 * 50.00076 * 6 5 4 29 29 H 1.09002 * 109.47056 * 289.99734 * 6 5 4 30 30 H 1.09000 * 109.46966 * 59.99784 * 7 6 5 31 31 H 1.09002 * 109.46807 * 299.99806 * 7 6 5 32 32 H 1.08998 * 109.46837 * 59.99832 * 8 7 6 33 33 H 1.09002 * 109.46926 * 299.99636 * 8 7 6 34 34 H 0.97001 * 119.99646 * 180.02562 * 12 11 9 35 35 H 1.08998 * 109.48368 * 54.58885 * 17 5 4 36 36 H 1.09000 * 109.48629 * 174.63214 * 17 5 4 37 37 H 1.08996 * 109.46707 * 178.78313 * 20 18 17 38 38 H 1.08994 * 109.46864 * 298.78007 * 20 18 17 39 39 H 1.09000 * 109.46930 * 58.78423 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0470 -0.7343 -1.2424 5 7 3.5069 -0.8663 -1.1586 6 6 4.0651 -1.3540 -2.4269 7 6 5.5906 -1.2429 -2.3890 8 6 6.1719 -1.7503 -3.7102 9 6 7.6744 -1.6403 -3.6731 10 1 8.1656 -1.2474 -2.7952 11 6 8.4220 -2.0413 -4.7600 12 7 7.8239 -2.5193 -5.8293 13 14 10.2841 -1.8978 -4.7169 14 1 10.7066 -1.3281 -3.4122 15 1 10.8882 -3.2435 -4.8879 16 1 10.7374 -1.0083 -5.8162 17 6 3.9075 -1.7299 -0.0408 18 6 3.5168 -1.0632 1.2832 19 1 3.7058 -1.7483 2.1096 20 6 4.3320 0.2171 1.4765 21 6 2.0416 -0.7257 1.2268 22 8 1.2981 -1.0250 2.1301 23 1 -0.3634 -1.0276 0.0105 24 1 -0.3633 0.5228 0.8847 25 1 -0.3634 0.5047 -0.8952 26 1 1.7839 -0.1676 -2.1355 27 1 1.5948 -1.7248 -1.2938 28 1 3.6774 -0.7530 -3.2495 29 1 3.7802 -2.3960 -2.5724 30 1 5.9783 -1.8439 -1.5664 31 1 5.8755 -0.2009 -2.2435 32 1 5.7841 -1.1490 -4.5324 33 1 5.8870 -2.7923 -3.8561 34 1 8.3499 -2.8018 -6.5938 35 1 3.4029 -2.6923 -0.1260 36 1 4.9866 -1.8814 -0.0669 37 1 4.0358 0.6992 2.4081 38 1 5.3927 -0.0302 1.5166 39 1 4.1480 0.8943 0.6424 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000661550956.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:37 Heat of formation + Delta-G solvation = -59.920219 kcal Electronic energy + Delta-G solvation = -17406.275832 eV Core-core repulsion = 14733.882149 eV Total energy + Delta-G solvation = -2672.393683 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.39575 -37.73172 -34.42470 -33.72111 -32.82218 -30.83524 -27.06328 -26.85364 -25.37588 -23.45209 -22.38314 -21.50673 -19.81041 -18.49164 -16.52833 -16.07101 -15.90538 -15.32538 -14.93856 -14.71589 -14.46513 -14.09958 -13.65035 -13.14765 -12.64419 -12.42169 -12.39618 -12.25835 -12.00876 -11.79927 -11.77514 -11.35784 -11.21369 -11.14287 -10.84577 -10.77095 -10.54979 -10.45705 -9.66646 -9.37234 -9.30498 -9.05773 -8.35498 -8.19561 -6.00668 -4.02667 1.87134 3.30698 3.38352 3.42397 3.82695 4.00000 4.46182 4.61381 4.72288 4.78190 4.97408 5.11369 5.23229 5.35459 5.37825 5.52225 5.54106 5.55996 5.67338 5.76963 5.77827 5.83554 5.88271 5.96763 6.00490 6.03772 6.25987 6.29159 6.65302 6.69394 7.06611 7.24093 7.24964 7.44083 7.67454 7.81556 7.99687 8.42773 9.04843 9.61600 11.10803 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.044306 B = 0.004527 C = 0.004247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.813915 B = 6183.641640 C = 6591.557588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.137 4.137 3 H 0.112 0.888 4 C 0.065 3.935 5 N -0.540 5.540 6 C 0.058 3.942 7 C -0.105 4.105 8 C 0.021 3.979 9 C -0.518 4.518 10 H 0.056 0.944 11 C 0.056 3.944 12 N -0.896 5.896 13 Si 0.891 3.109 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.284 1.284 17 C 0.059 3.941 18 C -0.135 4.135 19 H 0.093 0.907 20 C -0.132 4.132 21 C 0.370 3.630 22 O -0.461 6.461 23 H 0.056 0.944 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.086 0.914 27 H 0.035 0.965 28 H 0.073 0.927 29 H 0.030 0.970 30 H 0.047 0.953 31 H 0.057 0.943 32 H 0.016 0.984 33 H 0.013 0.987 34 H 0.259 0.741 35 H 0.035 0.965 36 H 0.097 0.903 37 H 0.049 0.951 38 H 0.068 0.932 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.578 4.615 11.223 16.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.156 4.156 3 H 0.130 0.870 4 C -0.064 4.064 5 N -0.264 5.264 6 C -0.069 4.069 7 C -0.143 4.143 8 C -0.017 4.017 9 C -0.556 4.556 10 H 0.074 0.926 11 C -0.145 4.145 12 N -0.536 5.536 13 Si 0.719 3.281 14 H -0.197 1.197 15 H -0.211 1.211 16 H -0.210 1.210 17 C -0.069 4.069 18 C -0.154 4.154 19 H 0.111 0.889 20 C -0.189 4.189 21 C 0.246 3.754 22 O -0.334 6.334 23 H 0.075 0.925 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.104 0.896 27 H 0.053 0.947 28 H 0.091 0.909 29 H 0.049 0.951 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.034 0.966 33 H 0.032 0.968 34 H 0.069 0.931 35 H 0.053 0.947 36 H 0.116 0.884 37 H 0.068 0.932 38 H 0.087 0.913 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.749 4.845 11.608 17.212 hybrid contribution 0.780 -0.825 -0.347 1.188 sum -10.969 4.020 11.261 16.226 Atomic orbital electron populations 1.21633 0.93224 1.02517 1.02282 1.21941 0.97004 1.01948 0.94705 0.86984 1.22110 0.88320 0.98930 0.97009 1.61825 1.08826 1.50848 1.04894 1.22296 0.97761 0.97722 0.89129 1.21678 0.90799 1.01156 1.00665 1.19081 0.95378 0.96156 0.91061 1.21280 0.91910 1.41680 1.00729 0.92618 1.25029 0.98556 0.95347 0.95566 1.69976 1.35313 1.43297 1.05008 0.86555 0.85861 0.77680 0.78028 1.19714 1.21076 1.21019 1.22208 1.02706 0.93187 0.88812 1.22034 0.93839 1.00201 0.99343 0.88905 1.21617 0.99777 0.95691 1.01831 1.25034 0.90466 0.74133 0.85815 1.90360 1.60469 1.44072 1.38489 0.92487 0.91902 0.91753 0.89556 0.94664 0.90864 0.95143 0.93401 0.92429 0.96579 0.96838 0.93096 0.94728 0.88434 0.93203 0.91293 0.90521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 8.63 37.16 0.32 -1.01 16 2 C -0.14 -1.45 2.94 -91.25 -0.27 -1.72 16 3 H 0.11 1.10 7.94 -51.93 -0.41 0.69 16 4 C 0.06 0.74 4.80 -3.71 -0.02 0.73 16 5 N -0.54 -7.26 4.07 -234.36 -0.95 -8.22 16 6 C 0.06 0.92 4.96 -3.82 -0.02 0.91 16 7 C -0.11 -2.06 5.08 -26.73 -0.14 -2.19 16 8 C 0.02 0.52 4.97 -27.89 -0.14 0.38 16 9 C -0.52 -14.44 9.11 -34.44 -0.31 -14.75 16 10 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 11 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 12 N -0.90 -26.74 13.29 55.43 0.74 -26.00 16 13 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 14 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 15 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 C 0.06 0.76 4.76 -3.71 -0.02 0.74 16 18 C -0.13 -1.56 3.22 -91.25 -0.29 -1.86 16 19 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 20 C -0.13 -1.40 9.05 37.16 0.34 -1.07 16 21 C 0.37 4.61 5.97 -28.31 -0.17 4.45 16 22 O -0.46 -6.93 16.94 6.00 0.10 -6.82 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.61 8.06 -51.93 -0.42 0.19 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.09 0.91 7.94 -51.93 -0.41 0.50 16 27 H 0.04 0.41 8.10 -51.93 -0.42 -0.01 16 28 H 0.07 1.16 7.93 -51.93 -0.41 0.75 16 29 H 0.03 0.50 8.13 -51.93 -0.42 0.08 16 30 H 0.05 0.92 6.35 -51.93 -0.33 0.59 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.03 0.45 8.10 -51.93 -0.42 0.03 16 36 H 0.10 1.32 6.06 -51.93 -0.31 1.01 16 37 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 0.85 7.42 -51.93 -0.39 0.47 16 LS Contribution 311.32 15.07 4.69 4.69 Total: -1.00 -30.25 311.32 -8.13 -38.38 By element: Atomic # 1 Polarization: 2.30 SS G_CDS: -6.87 Total: -4.57 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: -0.81 Total: -13.90 kcal Atomic # 7 Polarization: -34.00 SS G_CDS: -0.22 Total: -34.22 kcal Atomic # 8 Polarization: -6.93 SS G_CDS: 0.10 Total: -6.82 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.25 -8.13 -38.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000661550956.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.542 kcal (2) G-P(sol) polarization free energy of solvation -30.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds