Wall clock time and date at job start Mon Mar 30 2020 03:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.70894 * 2 1 4 4 C 1.53303 * 109.70968 * 239.41647 * 2 1 3 5 5 N 1.46827 * 109.39613 * 186.47897 * 4 2 1 6 6 C 1.46903 * 110.99723 * 189.75113 * 5 4 2 7 7 C 1.53000 * 109.47252 * 170.00080 * 6 5 4 8 8 C 1.53001 * 109.47355 * 180.02562 * 7 6 5 9 9 C 1.50694 * 109.47168 * 179.97438 * 8 7 6 10 10 H 1.08000 * 120.00563 * 359.97438 * 9 8 7 11 11 C 1.37885 * 119.99902 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99913 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99854 * 179.72538 * 11 9 8 14 14 H 1.48504 * 109.47032 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.46816 * 120.00323 * 13 11 9 16 16 H 1.48495 * 109.46630 * 240.00111 * 13 11 9 17 17 C 1.46828 * 111.56802 * 65.38761 * 5 4 2 18 18 C 1.53301 * 109.39946 * 294.60661 * 17 5 4 19 19 H 1.08996 * 109.70942 * 173.47816 * 18 17 5 20 20 C 1.53001 * 109.70998 * 294.10907 * 18 17 5 21 21 C 1.51434 * 108.23833 * 53.79492 * 18 17 5 22 22 O 1.20764 * 121.11022 * 130.99439 * 21 18 17 23 23 H 1.09003 * 109.47248 * 180.58612 * 1 2 3 24 24 H 1.08995 * 109.47060 * 300.58275 * 1 2 3 25 25 H 1.09000 * 109.47236 * 60.58540 * 1 2 3 26 26 H 1.08993 * 109.48488 * 66.49756 * 4 2 1 27 27 H 1.09000 * 109.48077 * 306.45031 * 4 2 1 28 28 H 1.09000 * 109.47311 * 50.00076 * 6 5 4 29 29 H 1.09002 * 109.47056 * 289.99734 * 6 5 4 30 30 H 1.09000 * 109.46966 * 59.99784 * 7 6 5 31 31 H 1.09002 * 109.46807 * 299.99806 * 7 6 5 32 32 H 1.08998 * 109.46837 * 59.99832 * 8 7 6 33 33 H 1.09002 * 109.46926 * 299.99636 * 8 7 6 34 34 H 0.97001 * 119.99646 * 180.02562 * 12 11 9 35 35 H 1.08998 * 109.48368 * 54.58885 * 17 5 4 36 36 H 1.09000 * 109.48629 * 174.63214 * 17 5 4 37 37 H 1.08996 * 109.46707 * 178.78313 * 20 18 17 38 38 H 1.08994 * 109.46864 * 298.78007 * 20 18 17 39 39 H 1.09000 * 109.46930 * 58.78423 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0470 -0.7343 -1.2424 5 7 3.5069 -0.8663 -1.1586 6 6 4.0651 -1.3540 -2.4269 7 6 5.5906 -1.2429 -2.3890 8 6 6.1719 -1.7503 -3.7102 9 6 7.6744 -1.6403 -3.6731 10 1 8.1656 -1.2474 -2.7952 11 6 8.4220 -2.0413 -4.7600 12 7 7.8239 -2.5193 -5.8293 13 14 10.2841 -1.8978 -4.7169 14 1 10.7066 -1.3281 -3.4122 15 1 10.8882 -3.2435 -4.8879 16 1 10.7374 -1.0083 -5.8162 17 6 3.9075 -1.7299 -0.0408 18 6 3.5168 -1.0632 1.2832 19 1 3.7058 -1.7483 2.1096 20 6 4.3320 0.2171 1.4765 21 6 2.0416 -0.7257 1.2268 22 8 1.2981 -1.0250 2.1301 23 1 -0.3634 -1.0276 0.0105 24 1 -0.3633 0.5228 0.8847 25 1 -0.3634 0.5047 -0.8952 26 1 1.7839 -0.1676 -2.1355 27 1 1.5948 -1.7248 -1.2938 28 1 3.6774 -0.7530 -3.2495 29 1 3.7802 -2.3960 -2.5724 30 1 5.9783 -1.8439 -1.5664 31 1 5.8755 -0.2009 -2.2435 32 1 5.7841 -1.1490 -4.5324 33 1 5.8870 -2.7923 -3.8561 34 1 8.3499 -2.8018 -6.5938 35 1 3.4029 -2.6923 -0.1260 36 1 4.9866 -1.8814 -0.0669 37 1 4.0358 0.6992 2.4081 38 1 5.3927 -0.0302 1.5166 39 1 4.1480 0.8943 0.6424 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000661550956.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:36 Heat of formation + Delta-G solvation = -77.643955 kcal Electronic energy + Delta-G solvation = -17407.044391 eV Core-core repulsion = 14733.882149 eV Total energy + Delta-G solvation = -2673.162242 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.40563 -38.87119 -36.05178 -34.63281 -34.45211 -32.44484 -28.60676 -27.80996 -26.58952 -24.93734 -23.35306 -22.94618 -21.31578 -19.45234 -18.46824 -17.28134 -16.97112 -16.54864 -16.26401 -16.05851 -15.69104 -15.40641 -14.98282 -14.33996 -14.04807 -13.74301 -13.44359 -13.37549 -13.21994 -13.07099 -12.90925 -12.72999 -12.52748 -12.43129 -12.28970 -12.14975 -11.96313 -11.74374 -11.35274 -11.30192 -11.01097 -10.52418 -10.30823 -9.31643 -8.17491 -6.27567 0.88344 1.41900 1.42612 1.55542 2.43036 2.78115 3.03541 3.16366 3.68284 3.80198 3.82429 4.06936 4.19042 4.25763 4.35317 4.40939 4.60324 4.64286 4.65377 4.71736 4.77697 4.84559 4.95604 5.01475 5.03371 5.06569 5.08080 5.14267 5.24868 5.31769 5.43068 5.56917 5.79600 5.90723 6.01238 6.12262 6.30529 6.45390 6.90304 7.41768 8.94547 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.044306 B = 0.004527 C = 0.004247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.813915 B = 6183.641640 C = 6591.557588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.131 4.131 3 H 0.127 0.873 4 C 0.065 3.935 5 N -0.538 5.538 6 C 0.069 3.931 7 C -0.089 4.089 8 C 0.024 3.976 9 C -0.538 4.538 10 H 0.060 0.940 11 C -0.001 4.001 12 N -0.934 5.934 13 Si 0.962 3.038 14 H -0.261 1.261 15 H -0.280 1.280 16 H -0.279 1.279 17 C 0.059 3.941 18 C -0.131 4.131 19 H 0.097 0.903 20 C -0.128 4.128 21 C 0.370 3.630 22 O -0.489 6.489 23 H 0.047 0.953 24 H 0.060 0.940 25 H 0.084 0.916 26 H 0.100 0.900 27 H 0.033 0.967 28 H 0.077 0.923 29 H 0.025 0.975 30 H 0.051 0.949 31 H 0.057 0.943 32 H -0.007 1.007 33 H -0.011 1.011 34 H 0.262 0.738 35 H 0.032 0.968 36 H 0.090 0.910 37 H 0.059 0.941 38 H 0.070 0.930 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.371 5.551 11.997 17.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.150 4.150 3 H 0.144 0.856 4 C -0.063 4.063 5 N -0.262 5.262 6 C -0.058 4.058 7 C -0.127 4.127 8 C -0.014 4.014 9 C -0.576 4.576 10 H 0.078 0.922 11 C -0.198 4.198 12 N -0.575 5.575 13 Si 0.787 3.213 14 H -0.185 1.185 15 H -0.206 1.206 16 H -0.205 1.205 17 C -0.069 4.069 18 C -0.151 4.151 19 H 0.115 0.885 20 C -0.185 4.185 21 C 0.248 3.752 22 O -0.364 6.364 23 H 0.067 0.933 24 H 0.079 0.921 25 H 0.103 0.897 26 H 0.119 0.881 27 H 0.052 0.948 28 H 0.095 0.905 29 H 0.043 0.957 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.012 0.988 33 H 0.007 0.993 34 H 0.071 0.929 35 H 0.050 0.950 36 H 0.108 0.892 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.548 5.790 12.395 17.903 hybrid contribution 0.687 -1.130 -0.589 1.448 sum -10.861 4.660 11.807 16.705 Atomic orbital electron populations 1.21621 0.92251 1.02251 1.03217 1.21944 0.97754 1.02176 0.93103 0.85574 1.22183 0.86715 0.99285 0.98111 1.61760 1.10239 1.50526 1.03648 1.22014 0.95393 0.97664 0.90730 1.21412 0.93172 1.00657 0.97486 1.18990 0.94664 0.94429 0.93305 1.21735 0.93466 1.41486 1.00942 0.92178 1.25954 1.03817 0.94897 0.95156 1.70102 1.37357 1.44264 1.05792 0.85441 0.79546 0.77823 0.78499 1.18514 1.20577 1.20474 1.22206 1.02213 0.93234 0.89249 1.22022 0.93644 1.00769 0.98631 0.88486 1.21593 0.99684 0.95013 1.02225 1.25354 0.90543 0.73405 0.85909 1.90357 1.61064 1.45335 1.39651 0.93349 0.92084 0.89729 0.88146 0.94832 0.90495 0.95719 0.93033 0.92438 0.98829 0.99301 0.92883 0.94991 0.89187 0.92190 0.91094 0.90820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 8.63 71.98 0.62 -1.69 16 2 C -0.13 -2.49 2.94 -11.20 -0.03 -2.53 16 3 H 0.13 2.11 7.94 -2.39 -0.02 2.09 16 4 C 0.06 1.36 4.80 86.42 0.42 1.77 16 5 N -0.54 -13.63 4.07 -895.39 -3.64 -17.27 16 6 C 0.07 2.17 4.96 86.30 0.43 2.60 16 7 C -0.09 -3.47 5.08 30.59 0.16 -3.31 16 8 C 0.02 1.22 4.97 29.85 0.15 1.36 16 9 C -0.54 -30.14 9.11 25.60 0.23 -29.90 16 10 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 11 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 12 N -0.93 -56.43 13.29 21.45 0.28 -56.14 16 13 Si 0.96 43.81 29.54 68.60 2.03 45.83 16 14 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 15 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 16 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 17 C 0.06 1.45 4.76 86.42 0.41 1.86 16 18 C -0.13 -2.85 3.22 -11.20 -0.04 -2.88 16 19 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 20 C -0.13 -2.48 9.05 71.98 0.65 -1.82 16 21 C 0.37 8.67 5.97 29.57 0.18 8.85 16 22 O -0.49 -14.18 16.94 -1.46 -0.02 -14.21 16 23 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.06 1.08 8.06 -2.39 -0.02 1.06 16 25 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.10 1.86 7.94 -2.39 -0.02 1.84 16 27 H 0.03 0.73 8.10 -2.39 -0.02 0.71 16 28 H 0.08 2.36 7.93 -2.39 -0.02 2.34 16 29 H 0.02 0.80 8.13 -2.39 -0.02 0.78 16 30 H 0.05 1.95 6.35 -2.39 -0.02 1.93 16 31 H 0.06 2.22 8.14 -2.39 -0.02 2.21 16 32 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 33 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 34 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 35 H 0.03 0.80 8.10 -2.39 -0.02 0.78 16 36 H 0.09 2.35 6.06 -2.39 -0.01 2.34 16 37 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.07 1.48 7.42 -2.39 -0.02 1.46 16 Total: -1.00 -64.26 311.32 3.27 -60.99 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: 0.99 Total: 6.07 kcal Atomic # 6 Polarization: -28.91 SS G_CDS: 3.63 Total: -25.28 kcal Atomic # 7 Polarization: -70.05 SS G_CDS: -3.36 Total: -73.41 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.02 Total: -14.21 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Total: -64.26 3.27 -60.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000661550956.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.653 kcal (2) G-P(sol) polarization free energy of solvation -64.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds