Wall clock time and date at job start Mon Mar 30 2020 03:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.66909 * 2 1 4 4 C 1.53712 * 109.57135 * 239.69646 * 2 1 3 5 5 H 1.09003 * 112.11852 * 67.91018 * 4 2 1 6 6 C 1.54609 * 107.81448 * 192.55733 * 4 2 1 7 7 C 1.54291 * 104.83745 * 88.56665 * 6 4 2 8 8 C 1.54610 * 104.83942 * 359.97438 * 7 6 4 9 9 H 1.09001 * 112.71976 * 147.14861 * 8 7 6 10 10 C 1.53708 * 107.80958 * 271.44055 * 8 7 6 11 11 C 1.53136 * 108.89029 * 47.62746 * 10 8 7 12 12 H 1.08995 * 109.38531 * 174.06979 * 11 10 8 13 13 O 1.42905 * 109.42701 * 293.93683 * 11 10 8 14 14 C 1.42898 * 113.99615 * 270.26096 * 13 11 10 15 15 C 1.52999 * 109.46900 * 180.02562 * 14 13 11 16 16 C 1.50705 * 109.47409 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99655 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00262 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99805 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99904 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47481 * 59.99910 * 20 18 16 22 22 H 1.48500 * 109.46920 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.46833 * 299.99693 * 20 18 16 24 24 N 1.48707 * 107.24325 * 304.27634 * 4 2 1 25 25 H 1.08995 * 109.47440 * 299.70033 * 1 2 3 26 26 H 1.09000 * 109.47041 * 59.70397 * 1 2 3 27 27 H 1.08997 * 109.47114 * 179.69890 * 1 2 3 28 28 H 1.08988 * 110.36577 * 207.40652 * 6 4 2 29 29 H 1.08999 * 110.36627 * 329.73217 * 6 4 2 30 30 H 1.08998 * 110.36650 * 241.15942 * 7 6 4 31 31 H 1.08994 * 110.36462 * 118.83915 * 7 6 4 32 32 H 1.08998 * 109.56663 * 287.80239 * 10 8 7 33 33 H 1.08997 * 109.56955 * 167.45106 * 10 8 7 34 34 H 1.09007 * 109.47325 * 300.00090 * 14 13 11 35 35 H 1.09001 * 109.47659 * 60.00215 * 14 13 11 36 36 H 1.08997 * 109.47353 * 300.00157 * 15 14 13 37 37 H 1.09009 * 109.47187 * 60.00209 * 15 14 13 38 38 H 0.97006 * 119.99223 * 179.97438 * 19 18 16 39 39 H 1.00894 * 111.00390 * 168.33992 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8968 1.0264 0.0000 4 6 2.0448 -0.7308 -1.2504 5 1 1.8245 -0.1823 -2.1663 6 6 3.5570 -0.9891 -1.0582 7 6 3.6366 -2.3498 -0.3351 8 6 2.1653 -2.7895 -0.1557 9 1 2.0401 -3.8712 -0.2051 10 6 1.6599 -2.2084 1.1746 11 6 2.0437 -0.7276 1.2464 12 1 1.5993 -0.2815 2.1360 13 8 3.4661 -0.6081 1.3146 14 6 3.9866 -0.6135 2.6454 15 6 5.5100 -0.4802 2.5977 16 6 6.0590 -0.4853 4.0012 17 1 5.3884 -0.5750 4.8430 18 6 7.4173 -0.3753 4.2106 19 7 8.2339 -0.2666 3.1855 20 14 8.0977 -0.3823 5.9503 21 1 7.7337 -1.6571 6.6192 22 1 9.5762 -0.2516 5.9040 23 1 7.5241 0.7571 6.7107 24 7 1.4389 -2.0888 -1.2482 25 1 -0.3634 0.5091 0.8926 26 1 -0.3633 0.5184 -0.8873 27 1 -0.3633 -1.0276 -0.0054 28 1 4.0584 -1.0431 -2.0244 29 1 4.0004 -0.2062 -0.4430 30 1 4.1192 -2.2359 0.6356 31 1 4.1772 -3.0728 -0.9459 32 1 2.1184 -2.7451 2.0051 33 1 0.5757 -2.3075 1.2278 34 1 3.5663 0.2234 3.2034 35 1 3.7186 -1.5488 3.1367 36 1 5.9306 -1.3167 2.0397 37 1 5.7777 0.4554 2.1067 38 1 9.1895 -0.1889 3.3329 39 1 1.5835 -2.5508 -2.1334 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686084795.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:31 Heat of formation + Delta-G solvation = -45.999818 kcal Electronic energy + Delta-G solvation = -18358.534194 eV Core-core repulsion = 15686.744145 eV Total energy + Delta-G solvation = -2671.790049 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.72575 -36.55416 -33.43566 -32.88402 -31.10970 -29.95594 -29.21785 -26.54325 -24.60413 -22.94091 -22.30067 -20.89852 -19.97731 -18.22104 -17.22653 -16.58442 -15.76843 -14.67670 -14.60554 -14.24312 -14.04506 -13.36978 -13.29035 -13.02397 -12.66232 -12.29072 -12.26713 -11.84573 -11.69395 -11.30825 -11.12666 -10.99069 -10.74769 -10.71053 -10.59724 -10.42948 -9.96563 -9.85927 -9.68845 -9.44027 -9.15964 -8.57476 -8.52075 -8.32017 -6.03745 -4.07179 3.31444 3.35840 3.37935 4.23472 4.37006 4.49864 4.88654 4.96155 5.23031 5.31707 5.32438 5.36286 5.47242 5.53857 5.59886 5.80037 5.81512 5.88662 5.92364 6.06444 6.11839 6.21866 6.29588 6.32181 6.33913 6.43204 6.49851 6.56528 6.78718 6.81078 6.99071 7.13320 7.49053 7.56159 7.78851 7.84649 8.13351 8.36897 8.99341 9.56686 11.07702 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.042823 B = 0.005665 C = 0.005470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.698856 B = 4941.610874 C = 5117.935271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.076 4.076 3 H 0.074 0.926 4 C 0.071 3.929 5 H 0.084 0.916 6 C -0.144 4.144 7 C -0.149 4.149 8 C 0.068 3.932 9 H 0.083 0.917 10 C -0.128 4.128 11 C 0.091 3.909 12 H 0.053 0.947 13 O -0.367 6.367 14 C 0.057 3.943 15 C 0.029 3.971 16 C -0.524 4.524 17 H 0.055 0.945 18 C 0.060 3.940 19 N -0.892 5.892 20 Si 0.895 3.105 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.276 1.276 24 N -0.659 5.659 25 H 0.044 0.956 26 H 0.050 0.950 27 H 0.072 0.928 28 H 0.046 0.954 29 H 0.103 0.897 30 H 0.106 0.894 31 H 0.042 0.958 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.032 0.968 35 H 0.032 0.968 36 H 0.022 0.978 37 H 0.022 0.978 38 H 0.262 0.738 39 H 0.328 0.672 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.664 -2.380 -7.915 15.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.095 4.095 3 H 0.092 0.908 4 C -0.039 4.039 5 H 0.102 0.898 6 C -0.183 4.183 7 C -0.187 4.187 8 C -0.042 4.042 9 H 0.101 0.899 10 C -0.166 4.166 11 C 0.032 3.968 12 H 0.071 0.929 13 O -0.287 6.287 14 C -0.018 4.018 15 C -0.008 4.008 16 C -0.563 4.563 17 H 0.073 0.927 18 C -0.142 4.142 19 N -0.530 5.530 20 Si 0.723 3.277 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.202 1.202 24 N -0.285 5.285 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.090 0.910 28 H 0.064 0.936 29 H 0.121 0.879 30 H 0.124 0.876 31 H 0.061 0.939 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.050 0.950 35 H 0.051 0.949 36 H 0.041 0.959 37 H 0.040 0.960 38 H 0.072 0.928 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -14.019 -2.192 -7.755 16.170 hybrid contribution 1.295 -0.197 0.810 1.540 sum -12.724 -2.390 -6.945 14.692 Atomic orbital electron populations 1.21691 0.94375 1.02802 1.00446 1.21384 0.95684 0.98726 0.93704 0.90810 1.22835 0.92850 0.90926 0.97336 0.89833 1.23000 0.96130 0.99866 0.99267 1.23126 0.96770 0.95470 1.03364 1.22785 0.92247 0.97094 0.92062 0.89929 1.22153 1.00863 0.96795 0.96771 1.21975 0.83533 0.94307 0.96958 0.92931 1.88259 1.18522 1.93872 1.28006 1.22937 0.98445 0.98029 0.82416 1.19034 0.86542 0.98077 0.97172 1.21042 0.92087 1.51046 0.92103 0.92720 1.24981 0.97041 0.95138 0.97042 1.69971 1.03410 1.49715 1.29934 0.86613 0.77824 0.78631 0.84670 1.20191 1.21191 1.20194 1.63789 1.54141 1.03130 1.07479 0.93709 0.93106 0.90957 0.93568 0.87900 0.87625 0.93878 0.91602 0.91065 0.94993 0.94925 0.95921 0.95963 0.92834 0.85764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 8.78 37.15 0.33 -1.24 16 2 C -0.08 -1.02 2.63 -90.15 -0.24 -1.26 16 3 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 4 C 0.07 0.92 4.05 -65.49 -0.27 0.65 16 5 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 6 C -0.14 -2.19 5.92 -25.21 -0.15 -2.34 16 7 C -0.15 -2.32 5.92 -25.21 -0.15 -2.47 16 8 C 0.07 0.92 4.53 -65.48 -0.30 0.62 16 9 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 10 C -0.13 -1.79 5.12 -26.29 -0.13 -1.92 16 11 C 0.09 1.38 2.37 -26.56 -0.06 1.32 16 12 H 0.05 0.80 7.78 -51.93 -0.40 0.40 16 13 O -0.37 -6.80 3.90 -35.23 -0.14 -6.93 16 14 C 0.06 1.22 5.42 37.16 0.20 1.42 16 15 C 0.03 0.76 5.34 -27.88 -0.15 0.61 16 16 C -0.52 -14.86 9.11 -34.44 -0.31 -15.17 16 17 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -26.84 13.29 55.43 0.74 -26.11 16 20 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 N -0.66 -8.04 6.05 -94.66 -0.57 -8.61 16 25 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.87 6.01 -51.93 -0.31 0.55 16 28 H 0.05 0.66 8.14 -51.94 -0.42 0.24 16 29 H 0.10 1.84 5.78 -51.93 -0.30 1.54 16 30 H 0.11 1.98 5.57 -51.93 -0.29 1.69 16 31 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.96 7.75 -51.93 -0.40 0.56 16 33 H 0.07 0.92 6.92 -51.93 -0.36 0.56 16 34 H 0.03 0.67 8.08 -51.93 -0.42 0.25 16 35 H 0.03 0.68 7.75 -51.93 -0.40 0.27 16 36 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.02 0.62 8.14 -51.92 -0.42 0.20 16 38 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 39 H 0.33 3.55 8.93 -39.29 -0.35 3.20 16 LS Contribution 292.68 15.07 4.41 4.41 Total: -1.00 -29.03 292.68 -8.50 -37.53 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -6.59 Total: 1.32 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: -1.33 Total: -18.18 kcal Atomic # 7 Polarization: -34.88 SS G_CDS: 0.16 Total: -34.72 kcal Atomic # 8 Polarization: -6.80 SS G_CDS: -0.14 Total: -6.93 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.03 -8.50 -37.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686084795.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.472 kcal (2) G-P(sol) polarization free energy of solvation -29.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds