Wall clock time and date at job start Mon Mar 30 2020 03:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.66909 * 2 1 4 4 C 1.53712 * 109.57135 * 239.69646 * 2 1 3 5 5 H 1.09003 * 112.11852 * 67.91018 * 4 2 1 6 6 C 1.54609 * 107.81448 * 192.55733 * 4 2 1 7 7 C 1.54291 * 104.83745 * 88.56665 * 6 4 2 8 8 C 1.54610 * 104.83942 * 359.97438 * 7 6 4 9 9 H 1.09001 * 112.71976 * 147.14861 * 8 7 6 10 10 C 1.53708 * 107.80958 * 271.44055 * 8 7 6 11 11 C 1.53136 * 108.89029 * 47.62746 * 10 8 7 12 12 H 1.08995 * 109.38531 * 174.06979 * 11 10 8 13 13 O 1.42905 * 109.42701 * 293.93683 * 11 10 8 14 14 C 1.42898 * 113.99615 * 270.26096 * 13 11 10 15 15 C 1.52999 * 109.46900 * 180.02562 * 14 13 11 16 16 C 1.50705 * 109.47409 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99655 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00262 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99805 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99904 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47481 * 59.99910 * 20 18 16 22 22 H 1.48500 * 109.46920 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.46833 * 299.99693 * 20 18 16 24 24 N 1.48707 * 107.24325 * 304.27634 * 4 2 1 25 25 H 1.08995 * 109.47440 * 299.70033 * 1 2 3 26 26 H 1.09000 * 109.47041 * 59.70397 * 1 2 3 27 27 H 1.08997 * 109.47114 * 179.69890 * 1 2 3 28 28 H 1.08988 * 110.36577 * 207.40652 * 6 4 2 29 29 H 1.08999 * 110.36627 * 329.73217 * 6 4 2 30 30 H 1.08998 * 110.36650 * 241.15942 * 7 6 4 31 31 H 1.08994 * 110.36462 * 118.83915 * 7 6 4 32 32 H 1.08998 * 109.56663 * 287.80239 * 10 8 7 33 33 H 1.08997 * 109.56955 * 167.45106 * 10 8 7 34 34 H 1.09007 * 109.47325 * 300.00090 * 14 13 11 35 35 H 1.09001 * 109.47659 * 60.00215 * 14 13 11 36 36 H 1.08997 * 109.47353 * 300.00157 * 15 14 13 37 37 H 1.09009 * 109.47187 * 60.00209 * 15 14 13 38 38 H 0.97006 * 119.99223 * 179.97438 * 19 18 16 39 39 H 1.00894 * 111.00390 * 168.33992 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8968 1.0264 0.0000 4 6 2.0448 -0.7308 -1.2504 5 1 1.8245 -0.1823 -2.1663 6 6 3.5570 -0.9891 -1.0582 7 6 3.6366 -2.3498 -0.3351 8 6 2.1653 -2.7895 -0.1557 9 1 2.0401 -3.8712 -0.2051 10 6 1.6599 -2.2084 1.1746 11 6 2.0437 -0.7276 1.2464 12 1 1.5993 -0.2815 2.1360 13 8 3.4661 -0.6081 1.3146 14 6 3.9866 -0.6135 2.6454 15 6 5.5100 -0.4802 2.5977 16 6 6.0590 -0.4853 4.0012 17 1 5.3884 -0.5750 4.8430 18 6 7.4173 -0.3753 4.2106 19 7 8.2339 -0.2666 3.1855 20 14 8.0977 -0.3823 5.9503 21 1 7.7337 -1.6571 6.6192 22 1 9.5762 -0.2516 5.9040 23 1 7.5241 0.7571 6.7107 24 7 1.4389 -2.0888 -1.2482 25 1 -0.3634 0.5091 0.8926 26 1 -0.3633 0.5184 -0.8873 27 1 -0.3633 -1.0276 -0.0054 28 1 4.0584 -1.0431 -2.0244 29 1 4.0004 -0.2062 -0.4430 30 1 4.1192 -2.2359 0.6356 31 1 4.1772 -3.0728 -0.9459 32 1 2.1184 -2.7451 2.0051 33 1 0.5757 -2.3075 1.2278 34 1 3.5663 0.2234 3.2034 35 1 3.7186 -1.5488 3.1367 36 1 5.9306 -1.3167 2.0397 37 1 5.7777 0.4554 2.1067 38 1 9.1895 -0.1889 3.3329 39 1 1.5835 -2.5508 -2.1334 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686084795.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:30 Heat of formation + Delta-G solvation = -63.762099 kcal Electronic energy + Delta-G solvation = -18359.304424 eV Core-core repulsion = 15686.744145 eV Total energy + Delta-G solvation = -2672.560279 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.90756 -38.02641 -35.36678 -34.20150 -32.39469 -31.69971 -30.51232 -27.71461 -26.54171 -24.18222 -23.42766 -22.80489 -21.18352 -19.46869 -18.54452 -18.33959 -17.36538 -16.56794 -16.24919 -15.47635 -15.28367 -14.73638 -14.44606 -14.28648 -14.25839 -13.90575 -13.60327 -13.21288 -12.91932 -12.85019 -12.76768 -12.46320 -12.42332 -12.17743 -11.89485 -11.77579 -11.53194 -11.45092 -11.27142 -11.00894 -10.81461 -10.61187 -9.93793 -9.57896 -8.24297 -6.37169 1.39258 1.42978 1.51003 2.36838 2.94302 3.09473 3.30869 3.75920 3.81797 4.10530 4.20788 4.24347 4.29968 4.36624 4.42957 4.48596 4.51591 4.71216 4.74283 4.86049 4.90113 4.93719 5.01278 5.02496 5.17878 5.21092 5.31446 5.34329 5.37387 5.54243 5.55229 5.60777 5.64859 5.75411 5.92613 6.13704 6.53596 6.55981 6.79071 7.32676 8.88166 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.042823 B = 0.005665 C = 0.005470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.698856 B = 4941.610874 C = 5117.935271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.076 4.076 3 H 0.065 0.935 4 C 0.077 3.923 5 H 0.104 0.896 6 C -0.145 4.145 7 C -0.151 4.151 8 C 0.074 3.926 9 H 0.100 0.900 10 C -0.125 4.125 11 C 0.080 3.920 12 H 0.054 0.946 13 O -0.373 6.373 14 C 0.077 3.923 15 C 0.037 3.963 16 C -0.548 4.548 17 H 0.064 0.936 18 C 0.002 3.998 19 N -0.932 5.932 20 Si 0.971 3.029 21 H -0.265 1.265 22 H -0.282 1.282 23 H -0.265 1.265 24 N -0.646 5.646 25 H 0.049 0.951 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.046 0.954 32 H 0.055 0.945 33 H 0.090 0.910 34 H 0.035 0.965 35 H 0.038 0.962 36 H -0.007 1.007 37 H -0.010 1.010 38 H 0.265 0.735 39 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.461 -2.795 -7.671 17.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.095 4.095 3 H 0.083 0.917 4 C -0.033 4.033 5 H 0.122 0.878 6 C -0.184 4.184 7 C -0.190 4.190 8 C -0.036 4.036 9 H 0.118 0.882 10 C -0.163 4.163 11 C 0.022 3.978 12 H 0.072 0.928 13 O -0.293 6.293 14 C 0.001 3.999 15 C 0.000 4.000 16 C -0.585 4.585 17 H 0.082 0.918 18 C -0.196 4.196 19 N -0.571 5.571 20 Si 0.795 3.205 21 H -0.190 1.190 22 H -0.207 1.207 23 H -0.190 1.190 24 N -0.273 5.273 25 H 0.068 0.932 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.108 0.892 34 H 0.053 0.947 35 H 0.056 0.944 36 H 0.011 0.989 37 H 0.009 0.991 38 H 0.074 0.926 39 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -15.844 -2.613 -7.523 17.733 hybrid contribution 1.861 -0.062 0.649 1.971 sum -13.983 -2.675 -6.874 15.809 Atomic orbital electron populations 1.21623 0.92241 1.03073 1.01466 1.21412 0.97260 0.97985 0.92858 0.91672 1.22824 0.90822 0.91626 0.98015 0.87757 1.22952 0.98080 0.98576 0.98809 1.23070 0.98415 0.96026 1.01505 1.22759 0.90424 0.98135 0.92311 0.88192 1.22128 1.01869 0.95489 0.96779 1.22285 0.81465 0.95800 0.98206 0.92796 1.88311 1.20974 1.94078 1.25948 1.22449 0.95139 0.98277 0.84036 1.18841 0.90197 0.95085 0.95914 1.21479 0.92860 1.51150 0.93047 0.91814 1.26001 0.97382 0.94332 1.01896 1.70118 1.03832 1.50503 1.32647 0.85417 0.77048 0.79315 0.78765 1.18955 1.20701 1.18986 1.63754 1.53134 1.02546 1.07850 0.93155 0.91706 0.90950 0.92867 0.91179 0.91209 0.93569 0.92660 0.89152 0.94683 0.94420 0.98852 0.99145 0.92607 0.84359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.55 8.78 71.98 0.63 -1.92 16 2 C -0.08 -1.93 2.63 -10.49 -0.03 -1.96 16 3 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 4 C 0.08 1.86 4.05 45.35 0.18 2.05 16 5 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 6 C -0.15 -4.43 5.92 31.58 0.19 -4.24 16 7 C -0.15 -4.76 5.92 31.58 0.19 -4.57 16 8 C 0.07 1.86 4.53 45.35 0.21 2.06 16 9 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 10 C -0.12 -3.30 5.12 30.88 0.16 -3.15 16 11 C 0.08 2.39 2.37 30.71 0.07 2.46 16 12 H 0.05 1.59 7.78 -2.39 -0.02 1.57 16 13 O -0.37 -14.27 3.90 -148.98 -0.58 -14.85 16 14 C 0.08 3.37 5.42 71.98 0.39 3.76 16 15 C 0.04 2.03 5.34 29.85 0.16 2.19 16 16 C -0.55 -31.69 9.11 25.60 0.23 -31.46 16 17 H 0.06 3.49 7.74 -2.91 -0.02 3.46 16 18 C 0.00 0.13 5.46 84.65 0.46 0.59 16 19 N -0.93 -57.61 13.29 21.45 0.28 -57.33 16 20 Si 0.97 44.34 29.54 68.60 2.03 46.37 16 21 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 22 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 23 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 24 N -0.65 -13.94 6.05 -453.41 -2.74 -16.68 16 25 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.07 1.48 6.01 -2.39 -0.01 1.46 16 28 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.07 2.63 5.78 -2.39 -0.01 2.62 16 30 H 0.07 2.74 5.57 -2.39 -0.01 2.72 16 31 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.05 1.58 7.75 -2.39 -0.02 1.56 16 33 H 0.09 2.07 6.92 -2.39 -0.02 2.05 16 34 H 0.03 1.49 8.08 -2.38 -0.02 1.47 16 35 H 0.04 1.59 7.75 -2.39 -0.02 1.57 16 36 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 37 H -0.01 -0.60 8.14 -2.38 -0.02 -0.62 16 38 H 0.27 15.36 8.31 -92.70 -0.77 14.59 16 39 H 0.34 6.26 8.93 -89.70 -0.80 5.46 16 Total: -1.00 -63.80 292.68 2.05 -61.75 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: 0.22 Total: 14.93 kcal Atomic # 6 Polarization: -37.03 SS G_CDS: 2.84 Total: -34.19 kcal Atomic # 7 Polarization: -71.55 SS G_CDS: -2.46 Total: -74.01 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: -0.58 Total: -14.85 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -63.80 2.05 -61.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686084795.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.012 kcal (2) G-P(sol) polarization free energy of solvation -63.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds