Wall clock time and date at job start Mon Mar 30 2020 03:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.47136 * 2 1 4 4 C 1.52996 * 109.46996 * 240.00458 * 2 1 3 5 5 C 1.50699 * 109.47372 * 102.23189 * 4 2 1 6 6 H 1.07999 * 120.00014 * 359.66084 * 5 4 2 7 7 C 1.37880 * 120.00239 * 179.66516 * 5 4 2 8 8 N 1.31518 * 119.99692 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00341 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47208 * 59.99666 * 9 7 5 11 11 H 1.48494 * 109.47230 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47041 * 299.99665 * 9 7 5 13 13 N 1.46895 * 109.47250 * 120.00247 * 2 1 3 14 14 C 1.47736 * 111.00069 * 174.74966 * 13 2 1 15 15 C 1.54416 * 107.20189 * 122.02647 * 14 13 2 16 16 C 1.55346 * 103.14270 * 22.17623 * 15 14 13 17 17 C 1.46611 * 110.99892 * 295.17284 * 13 2 1 18 18 C 1.53411 * 111.73952 * 336.41055 * 17 13 2 19 19 C 1.54747 * 103.66290 * 121.15469 * 18 17 13 20 20 O 1.44522 * 104.85161 * 23.79260 * 19 18 17 21 21 C 1.44699 * 105.46731 * 320.21682 * 20 19 18 22 22 H 1.08998 * 109.47231 * 63.69289 * 1 2 3 23 23 H 1.08996 * 109.46814 * 183.69515 * 1 2 3 24 24 H 1.09002 * 109.47135 * 303.69681 * 1 2 3 25 25 H 1.09001 * 109.47016 * 222.23415 * 4 2 1 26 26 H 1.09004 * 109.47201 * 342.23126 * 4 2 1 27 27 H 0.97006 * 119.99992 * 180.02562 * 8 7 5 28 28 H 1.09003 * 109.89647 * 241.42425 * 14 13 2 29 29 H 1.09007 * 109.89619 * 2.45998 * 14 13 2 30 30 H 1.09000 * 110.68077 * 140.59147 * 15 14 13 31 31 H 1.09000 * 110.68479 * 263.59251 * 15 14 13 32 32 H 1.08994 * 111.01481 * 83.58199 * 16 15 14 33 33 H 1.08996 * 111.01071 * 207.41888 * 16 15 14 34 34 H 1.09001 * 110.58749 * 239.70172 * 18 17 13 35 35 H 1.09004 * 110.58437 * 2.60802 * 18 17 13 36 36 H 1.09006 * 110.37053 * 142.63766 * 19 18 17 37 37 H 1.09003 * 110.36304 * 264.94936 * 19 18 17 38 38 H 1.09001 * 110.41796 * 280.65922 * 21 20 19 39 39 H 1.09007 * 110.41806 * 158.20304 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 2.4912 0.2948 -2.2668 6 1 2.4162 1.3495 -2.0468 7 6 2.9998 -0.1222 -3.4786 8 7 3.0916 -1.4065 -3.7463 9 14 3.5585 1.1371 -4.7401 10 1 4.6448 1.9685 -4.1621 11 1 4.0617 0.4369 -5.9491 12 1 2.4137 2.0070 -5.1118 13 7 2.0197 -0.6925 1.1994 14 6 3.4911 -0.8225 1.1720 15 6 4.0340 -0.1337 2.4430 16 6 2.8119 -0.1476 3.4018 17 6 1.6460 0.0355 2.4158 18 6 1.3936 1.5221 2.1334 19 6 -0.0695 1.7375 2.5890 20 8 -0.3168 0.6867 3.5498 21 6 0.3338 -0.4887 3.0122 22 1 -0.3633 0.4554 -0.9212 23 1 -0.3633 -1.0255 0.0662 24 1 -0.3633 0.5702 0.8550 25 1 2.8785 -1.3638 -0.9810 26 1 1.2384 -1.3271 -1.6717 27 1 3.4497 -1.6999 -4.5988 28 1 3.7705 -1.8761 1.1730 29 1 3.8902 -0.3340 0.2830 30 1 4.8616 -0.7033 2.8658 31 1 4.3437 0.8883 2.2246 32 1 2.7359 -1.1010 3.9244 33 1 2.8604 0.6805 4.1088 34 1 2.0723 2.1438 2.7173 35 1 1.4987 1.7333 1.0692 36 1 -0.1807 2.7148 3.0588 37 1 -0.7484 1.6439 1.7414 38 1 -0.2822 -0.9426 2.2358 39 1 0.5372 -1.2074 3.8061 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695801500.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:56 Heat of formation + Delta-G solvation = -41.853581 kcal Electronic energy + Delta-G solvation = -18647.517918 eV Core-core repulsion = 15975.907663 eV Total energy + Delta-G solvation = -2671.610255 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.03643 -38.44475 -36.05249 -34.29369 -32.33452 -30.45502 -30.08874 -28.86383 -25.91980 -25.19078 -23.93096 -22.41513 -21.26701 -19.57815 -18.81186 -17.41089 -17.33362 -16.57261 -16.44997 -16.21373 -15.64338 -15.09185 -14.31039 -14.17398 -13.95903 -13.70528 -13.50161 -13.28407 -13.21780 -12.91510 -12.75691 -12.62544 -12.45254 -12.31026 -12.01788 -11.89888 -11.59340 -11.56227 -11.41977 -11.11198 -10.91729 -10.55912 -10.37609 -9.13100 -8.19377 -6.30008 1.38069 1.40137 1.48065 2.38836 2.91554 3.12701 3.15149 3.55782 3.76473 3.86280 4.05597 4.11738 4.21124 4.28183 4.35320 4.39407 4.51644 4.53513 4.74605 4.80499 4.85144 4.87088 4.93402 4.98784 5.03323 5.06963 5.15627 5.24662 5.28329 5.35832 5.37715 5.50525 5.69163 5.78316 5.81441 6.08541 6.35687 6.42985 6.86712 7.38391 8.91802 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.032047 B = 0.007185 C = 0.006680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.507529 B = 3896.219834 C = 4190.403768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.085 3.915 3 H 0.046 0.954 4 C 0.034 3.966 5 C -0.536 4.536 6 H 0.056 0.944 7 C 0.003 3.997 8 N -0.930 5.930 9 Si 0.959 3.041 10 H -0.268 1.268 11 H -0.284 1.284 12 H -0.268 1.268 13 N -0.517 5.517 14 C 0.040 3.960 15 C -0.132 4.132 16 C -0.104 4.104 17 C 0.064 3.936 18 C -0.195 4.195 19 C 0.042 3.958 20 O -0.389 6.389 21 C 0.061 3.939 22 H 0.048 0.952 23 H 0.048 0.952 24 H 0.082 0.918 25 H 0.005 0.995 26 H -0.013 1.013 27 H 0.263 0.737 28 H 0.064 0.936 29 H 0.041 0.959 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.109 0.891 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.961 5.326 14.214 15.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.023 4.023 3 H 0.064 0.936 4 C -0.003 4.003 5 C -0.574 4.574 6 H 0.074 0.926 7 C -0.195 4.195 8 N -0.570 5.570 9 Si 0.783 3.217 10 H -0.193 1.193 11 H -0.210 1.210 12 H -0.193 1.193 13 N -0.242 5.242 14 C -0.088 4.088 15 C -0.170 4.170 16 C -0.142 4.142 17 C -0.026 4.026 18 C -0.233 4.233 19 C -0.034 4.034 20 O -0.308 6.308 21 C -0.016 4.016 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.100 0.900 25 H 0.023 0.977 26 H 0.005 0.995 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.060 0.940 30 H 0.108 0.892 31 H 0.084 0.916 32 H 0.102 0.898 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.127 0.873 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.270 4.717 14.274 15.204 hybrid contribution 0.840 0.868 -1.566 1.978 sum -1.430 5.584 12.708 13.954 Atomic orbital electron populations 1.22290 0.94681 1.01705 1.01995 1.21984 0.95345 0.95478 0.89448 0.93648 1.19143 0.94765 0.94870 0.91520 1.21654 1.41447 0.93242 1.01055 0.92564 1.25902 0.95979 0.97067 1.00516 1.70103 1.46849 1.15807 1.24271 0.85599 0.78936 0.78975 0.78147 1.19271 1.20951 1.19269 1.63480 1.11239 1.47996 1.01461 1.22803 0.87505 1.00495 0.97974 1.22809 0.98672 1.00838 0.94679 1.22629 0.92005 1.03299 0.96270 1.22534 0.97074 0.91742 0.91238 1.23697 0.98434 0.97031 1.04132 1.23705 0.94588 0.92537 0.92607 1.89110 1.76091 1.20509 1.45075 1.23391 0.91342 0.88371 0.98463 0.93316 0.93299 0.89997 0.97664 0.99487 0.92871 0.91776 0.94044 0.89222 0.91595 0.89805 0.89208 0.89436 0.89339 0.87283 0.91433 0.92132 0.87791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.49 7.40 71.98 0.53 -4.96 16 2 C 0.08 3.49 1.58 44.92 0.07 3.56 16 3 H 0.05 1.92 4.70 -2.38 -0.01 1.91 16 4 C 0.03 1.81 4.38 29.85 0.13 1.94 16 5 C -0.54 -30.07 9.03 25.60 0.23 -29.83 16 6 H 0.06 3.03 7.38 -2.91 -0.02 3.01 16 7 C 0.00 0.20 5.46 84.65 0.46 0.66 16 8 N -0.93 -56.64 13.29 21.45 0.28 -56.35 16 9 Si 0.96 44.04 29.54 68.60 2.03 46.07 16 10 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 12 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 13 N -0.52 -18.55 4.75 -814.40 -3.86 -22.41 16 14 C 0.04 1.42 5.63 86.62 0.49 1.90 16 15 C -0.13 -3.42 6.85 31.88 0.22 -3.21 16 16 C -0.10 -2.45 5.87 31.67 0.19 -2.27 16 17 C 0.06 1.83 0.68 4.11 0.00 1.83 16 18 C -0.19 -5.21 5.47 31.33 0.17 -5.03 16 19 C 0.04 1.01 7.07 72.58 0.51 1.53 16 20 O -0.39 -10.65 11.66 -148.98 -1.74 -12.38 16 21 C 0.06 1.67 6.44 72.11 0.46 2.14 16 22 H 0.05 1.85 8.14 -2.39 -0.02 1.84 16 23 H 0.05 1.83 7.82 -2.39 -0.02 1.81 16 24 H 0.08 2.53 2.34 -2.39 -0.01 2.53 16 25 H 0.01 0.29 6.11 -2.39 -0.01 0.28 16 26 H -0.01 -0.78 7.69 -2.38 -0.02 -0.80 16 27 H 0.26 15.10 8.31 -92.70 -0.77 14.33 16 28 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.04 1.75 6.52 -2.38 -0.02 1.73 16 30 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.08 1.82 7.79 -2.39 -0.02 1.80 16 33 H 0.09 1.82 7.71 -2.39 -0.02 1.80 16 34 H 0.09 2.05 7.50 -2.39 -0.02 2.03 16 35 H 0.09 2.77 4.20 -2.39 -0.01 2.76 16 36 H 0.11 2.12 8.14 -2.38 -0.02 2.10 16 37 H 0.07 1.68 5.73 -2.39 -0.01 1.66 16 38 H 0.06 1.81 6.14 -2.39 -0.01 1.80 16 39 H 0.10 2.49 7.63 -2.38 -0.02 2.47 16 Total: -1.00 -63.42 284.68 1.22 -62.21 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: 1.04 Total: 14.62 kcal Atomic # 6 Polarization: -35.22 SS G_CDS: 3.47 Total: -31.75 kcal Atomic # 7 Polarization: -75.18 SS G_CDS: -3.58 Total: -78.76 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: -1.74 Total: -12.38 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -63.42 1.22 -62.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695801500.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.352 kcal (2) G-P(sol) polarization free energy of solvation -63.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds