Wall clock time and date at job start Mon Mar 30 2020 03:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.46902 * 2 1 4 4 C 1.52998 * 109.47447 * 239.99776 * 2 1 3 5 5 C 1.50691 * 109.47415 * 173.24684 * 4 2 1 6 6 H 1.08003 * 120.00307 * 5.22732 * 5 4 2 7 7 C 1.37877 * 120.00125 * 185.50928 * 5 4 2 8 8 N 1.31513 * 120.00227 * 359.71742 * 7 5 4 9 9 Si 1.86809 * 120.00089 * 179.72760 * 7 5 4 10 10 H 1.48496 * 109.47010 * 59.99437 * 9 7 5 11 11 H 1.48496 * 109.46981 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.46740 * 299.99774 * 9 7 5 13 13 N 1.46904 * 109.47052 * 119.99758 * 2 1 3 14 14 C 1.47556 * 110.99931 * 193.49827 * 13 2 1 15 15 C 1.53570 * 88.00786 * 138.34238 * 14 13 2 16 16 C 1.47069 * 111.00045 * 289.35664 * 13 2 1 17 17 C 1.52945 * 113.57785 * 106.58746 * 16 13 2 18 18 C 1.53252 * 108.86341 * 175.97011 * 17 16 13 19 19 O 1.42881 * 109.34227 * 55.46786 * 18 17 16 20 20 C 1.42896 * 114.36116 * 297.08719 * 19 18 17 21 21 C 1.52945 * 113.56898 * 336.58452 * 16 13 2 22 22 H 1.09004 * 109.46935 * 174.54022 * 1 2 3 23 23 H 1.09000 * 109.47240 * 294.54285 * 1 2 3 24 24 H 1.09000 * 109.47256 * 54.54480 * 1 2 3 25 25 H 1.09005 * 109.46820 * 53.24659 * 4 2 1 26 26 H 1.08998 * 109.47255 * 293.25504 * 4 2 1 27 27 H 0.97001 * 120.00002 * 179.97438 * 8 7 5 28 28 H 1.08992 * 113.46856 * 253.12985 * 14 13 2 29 29 H 1.08998 * 113.45929 * 23.56012 * 14 13 2 30 30 H 1.08996 * 114.18761 * 87.91364 * 15 14 13 31 31 H 1.09003 * 114.18400 * 220.48502 * 15 14 13 32 32 H 1.09004 * 109.57063 * 295.78500 * 17 16 13 33 33 H 1.08996 * 109.57072 * 56.15416 * 17 16 13 34 34 H 1.09000 * 109.49242 * 295.50563 * 18 17 16 35 35 H 1.08998 * 109.49327 * 175.42859 * 18 17 16 36 36 H 1.08991 * 109.49564 * 302.95038 * 20 19 18 37 37 H 1.09004 * 109.51136 * 182.88363 * 20 19 18 38 38 H 1.08998 * 109.57851 * 303.84849 * 21 16 13 39 39 H 1.09010 * 109.57330 * 64.22581 * 21 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5377 -0.5782 -1.3355 6 1 4.0818 -0.1016 -0.5336 7 6 4.2127 -1.0506 -2.4410 8 7 3.5503 -1.6311 -3.4177 9 14 6.0684 -0.8665 -2.5516 10 1 6.7049 -1.5754 -1.4125 11 1 6.5487 -1.4519 -3.8290 12 1 6.4267 0.5737 -2.5008 13 7 2.0196 -0.6925 1.1995 14 6 3.4588 -0.4400 1.4053 15 6 3.1623 -0.2840 2.9041 16 6 1.7663 0.1051 2.4089 17 6 0.6352 -0.4453 3.2789 18 6 0.5310 0.4029 4.5510 19 8 0.3581 1.7750 4.1921 20 6 1.4543 2.3375 3.4683 21 6 1.6121 1.6016 2.1333 22 1 -0.3633 -1.0231 -0.0978 23 1 -0.3634 0.4269 0.9348 24 1 -0.3634 0.5961 -0.8371 25 1 1.5814 -0.2820 -2.1351 26 1 1.7787 -1.7778 -1.1909 27 1 4.0252 -1.9631 -4.1956 28 1 4.0877 -1.2998 1.1745 29 1 3.8100 0.4782 0.9346 30 1 3.1930 -1.2181 3.4649 31 1 3.7104 0.5258 3.3858 32 1 -0.3049 -0.3965 2.7294 33 1 0.8506 -1.4798 3.5463 34 1 1.4430 0.2924 5.1376 35 1 -0.3235 0.0707 5.1406 36 1 2.3684 2.2316 4.0523 37 1 1.2629 3.3941 3.2808 38 1 2.4972 1.9707 1.6153 39 1 0.7290 1.7704 1.5168 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695910106.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:49 Heat of formation + Delta-G solvation = -32.113146 kcal Electronic energy + Delta-G solvation = -18591.755382 eV Core-core repulsion = 15920.567504 eV Total energy + Delta-G solvation = -2671.187878 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.36104 -38.91349 -35.85389 -34.03895 -32.38055 -32.07417 -29.56054 -27.85115 -25.46203 -25.12908 -24.56647 -22.62251 -21.25835 -19.06922 -18.31182 -17.65373 -16.89778 -16.62031 -16.37163 -16.05710 -15.70349 -15.51289 -14.75858 -14.21875 -13.95799 -13.66934 -13.55970 -13.16560 -13.13465 -13.08125 -12.71710 -12.61321 -12.47783 -12.23201 -12.17731 -11.85557 -11.73108 -11.65951 -10.98739 -10.85905 -10.66335 -10.56341 -10.30908 -9.48001 -8.16061 -6.24034 1.37760 1.40487 1.47479 2.41071 3.00696 3.10029 3.20840 3.56618 3.73747 4.00287 4.09572 4.18710 4.25582 4.29318 4.33191 4.49545 4.54244 4.56106 4.62145 4.75804 4.82008 4.86071 4.91069 4.97334 5.03266 5.06259 5.15423 5.17238 5.21432 5.36159 5.42758 5.55605 5.61831 5.75016 5.88399 6.27585 6.32310 6.45888 6.90132 7.43499 8.96625 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.037225 B = 0.007049 C = 0.006537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.003572 B = 3971.496829 C = 4282.250009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.060 3.940 3 H 0.042 0.958 4 C 0.038 3.962 5 C -0.533 4.533 6 H 0.084 0.916 7 C -0.003 4.003 8 N -0.939 5.939 9 Si 0.956 3.044 10 H -0.266 1.266 11 H -0.289 1.289 12 H -0.266 1.266 13 N -0.468 5.468 14 C 0.017 3.983 15 C -0.131 4.131 16 C 0.054 3.946 17 C -0.127 4.127 18 C 0.066 3.934 19 O -0.400 6.400 20 C 0.071 3.929 21 C -0.161 4.161 22 H 0.044 0.956 23 H 0.068 0.932 24 H 0.053 0.947 25 H -0.010 1.010 26 H -0.017 1.017 27 H 0.259 0.741 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.109 0.891 36 H 0.065 0.935 37 H 0.105 0.895 38 H 0.070 0.930 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.859 6.497 16.660 18.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.049 4.049 3 H 0.060 0.940 4 C 0.000 4.000 5 C -0.571 4.571 6 H 0.101 0.899 7 C -0.200 4.200 8 N -0.580 5.580 9 Si 0.781 3.219 10 H -0.191 1.191 11 H -0.214 1.214 12 H -0.191 1.191 13 N -0.190 5.190 14 C -0.112 4.112 15 C -0.168 4.168 16 C -0.037 4.037 17 C -0.165 4.165 18 C -0.011 4.011 19 O -0.319 6.319 20 C -0.006 4.006 21 C -0.200 4.200 22 H 0.063 0.937 23 H 0.087 0.913 24 H 0.072 0.928 25 H 0.008 0.992 26 H 0.001 0.999 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.115 0.885 31 H 0.109 0.891 32 H 0.078 0.922 33 H 0.098 0.902 34 H 0.083 0.917 35 H 0.127 0.873 36 H 0.083 0.917 37 H 0.123 0.877 38 H 0.088 0.912 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.282 5.827 16.422 17.731 hybrid contribution 1.302 0.270 -1.330 1.880 sum -1.980 6.097 15.092 16.397 Atomic orbital electron populations 1.21842 0.94693 1.01235 1.01445 1.22038 0.94961 0.95763 0.92112 0.94045 1.18952 0.95504 0.93836 0.91670 1.22062 0.93562 1.37251 1.04209 0.89867 1.25959 1.03173 0.95273 0.95604 1.70123 1.37595 1.41260 1.09061 0.85631 0.80033 0.78814 0.77404 1.19081 1.21442 1.19051 1.68897 1.06658 1.42291 1.01128 1.23592 0.92006 1.00349 0.95255 1.23327 0.95157 1.02717 0.95623 1.22462 0.96149 0.92312 0.92744 1.22066 0.97578 1.00329 0.96537 1.22698 1.03056 0.80425 0.94875 1.87847 1.43238 1.26187 1.74609 1.22608 0.90089 0.97683 0.90227 1.22521 1.02734 0.94958 0.99755 0.93661 0.91302 0.92829 0.99195 0.99869 0.93204 0.92175 0.91919 0.88491 0.89127 0.92237 0.90166 0.91731 0.87291 0.91699 0.87652 0.91173 0.91045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.94 8.73 71.98 0.63 -4.31 16 2 C 0.06 2.53 1.57 44.91 0.07 2.60 16 3 H 0.04 1.74 5.61 -2.38 -0.01 1.73 16 4 C 0.04 2.05 4.64 29.84 0.14 2.19 16 5 C -0.53 -29.82 8.01 25.60 0.21 -29.62 16 6 H 0.08 4.30 4.15 -2.91 -0.01 4.29 16 7 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 8 N -0.94 -58.54 13.29 21.45 0.28 -58.25 16 9 Si 0.96 44.46 29.54 68.60 2.03 46.49 16 10 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 11 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 12 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 13 N -0.47 -17.82 5.92 -857.82 -5.08 -22.90 16 14 C 0.02 0.62 4.93 83.18 0.41 1.03 16 15 C -0.13 -3.46 7.33 30.84 0.23 -3.23 16 16 C 0.05 1.54 0.22 0.32 0.00 1.54 16 17 C -0.13 -3.15 5.51 30.66 0.17 -2.98 16 18 C 0.07 1.31 6.77 72.07 0.49 1.80 16 19 O -0.40 -9.36 10.72 -148.98 -1.60 -10.95 16 20 C 0.07 1.49 6.76 72.07 0.49 1.98 16 21 C -0.16 -4.28 3.62 30.66 0.11 -4.17 16 22 H 0.04 1.72 8.14 -2.38 -0.02 1.71 16 23 H 0.07 2.20 4.57 -2.39 -0.01 2.19 16 24 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 25 H -0.01 -0.61 8.14 -2.38 -0.02 -0.63 16 26 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 27 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 28 H 0.06 2.46 7.89 -2.39 -0.02 2.45 16 29 H 0.06 2.40 5.36 -2.39 -0.01 2.39 16 30 H 0.10 2.38 8.06 -2.39 -0.02 2.36 16 31 H 0.09 1.96 7.62 -2.39 -0.02 1.94 16 32 H 0.06 1.62 6.66 -2.39 -0.02 1.61 16 33 H 0.08 1.94 8.07 -2.39 -0.02 1.92 16 34 H 0.06 1.09 8.09 -2.39 -0.02 1.07 16 35 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.06 1.17 7.64 -2.39 -0.02 1.15 16 37 H 0.11 1.90 8.14 -2.38 -0.02 1.88 16 38 H 0.07 1.96 6.49 -2.39 -0.02 1.95 16 39 H 0.07 2.08 5.47 -2.38 -0.01 2.06 16 Total: -1.00 -66.24 287.18 0.06 -66.19 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: 1.03 Total: 12.36 kcal Atomic # 6 Polarization: -36.32 SS G_CDS: 3.40 Total: -32.92 kcal Atomic # 7 Polarization: -76.36 SS G_CDS: -4.80 Total: -81.16 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: -1.60 Total: -10.95 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -66.24 0.06 -66.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695910106.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.072 kcal (2) G-P(sol) polarization free energy of solvation -66.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds