Wall clock time and date at job start Mon Mar 30 2020 04:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46901 * 110.99956 * 2 1 4 4 C 1.50704 * 109.47024 * 293.95773 * 3 2 1 5 5 H 1.08001 * 120.00219 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99799 * 179.97438 * 4 3 2 7 7 N 1.31509 * 120.00247 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 119.99797 * 179.97438 * 6 4 3 9 9 H 1.48507 * 109.47052 * 59.99876 * 8 6 4 10 10 H 1.48495 * 109.47223 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47326 * 299.99835 * 8 6 4 12 12 C 1.46899 * 111.00291 * 123.95384 * 2 1 3 13 13 C 1.52999 * 109.46972 * 66.04950 * 12 2 1 14 14 H 1.09002 * 109.82483 * 305.70133 * 13 12 2 15 15 C 1.54459 * 109.90646 * 184.76102 * 13 12 2 16 16 C 1.55462 * 102.35787 * 219.08662 * 15 13 12 17 17 C 1.54087 * 100.80128 * 33.20419 * 16 15 13 18 18 C 1.52877 * 115.02703 * 94.63749 * 17 16 15 19 19 C 1.53942 * 86.80921 * 91.88417 * 18 17 16 20 20 C 1.52872 * 115.03878 * 194.76001 * 17 16 15 21 21 O 1.42643 * 106.36235 * 324.71976 * 17 16 15 22 22 H 1.08996 * 109.47043 * 296.04136 * 1 2 3 23 23 H 1.08995 * 109.47593 * 56.04913 * 1 2 3 24 24 H 1.09002 * 109.46680 * 176.04317 * 1 2 3 25 25 H 1.09004 * 109.46899 * 53.95102 * 3 2 1 26 26 H 1.09000 * 109.47677 * 173.95493 * 3 2 1 27 27 H 0.96999 * 119.99872 * 180.02562 * 7 6 4 28 28 H 1.09000 * 109.47127 * 306.04557 * 12 2 1 29 29 H 1.09003 * 109.47137 * 186.04765 * 12 2 1 30 30 H 1.08993 * 110.82787 * 337.30556 * 15 13 12 31 31 H 1.08997 * 110.82564 * 100.86862 * 15 13 12 32 32 H 1.09004 * 111.15235 * 275.31287 * 16 15 13 33 33 H 1.09006 * 111.15154 * 151.09094 * 16 15 13 34 34 H 1.09000 * 113.65946 * 206.36661 * 18 17 16 35 35 H 1.09001 * 113.65049 * 337.40885 * 18 17 16 36 36 H 1.09005 * 113.59169 * 270.16937 * 19 18 17 37 37 H 1.09003 * 113.58755 * 139.35056 * 19 18 17 38 38 H 1.08997 * 113.65804 * 22.61114 * 20 17 16 39 39 H 1.09006 * 113.65649 * 153.55540 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0472 -1.2984 5 1 1.0745 1.5113 -2.0488 6 6 2.0266 3.3496 -1.5284 7 7 2.7109 4.0023 -0.6146 8 14 1.5827 4.1869 -3.1382 9 1 0.1055 4.2230 -3.2865 10 1 2.1137 5.5737 -3.1377 11 1 2.1754 3.4299 -4.2699 12 6 1.9955 -0.7660 1.1376 13 6 1.6316 -2.2426 0.9702 14 1 0.5554 -2.3446 0.8303 15 6 2.0756 -3.0382 2.2175 16 6 2.6013 -4.3632 1.5972 17 6 3.1785 -3.8490 0.2643 18 6 4.6749 -3.5363 0.2852 19 6 4.8964 -4.9842 -0.1885 20 6 3.4736 -4.9318 -0.7737 21 8 2.3238 -2.7894 -0.1616 22 1 -0.3633 0.4511 0.9233 23 1 -0.3634 0.5739 -0.8524 24 1 -0.3633 -1.0253 -0.0709 25 1 1.5610 1.9274 0.8309 26 1 3.0797 1.3445 0.1082 27 1 2.9848 4.9186 -0.7763 28 1 1.5612 -0.3872 2.0628 29 1 3.0798 -0.6610 1.1756 30 1 2.8718 -2.5156 2.7474 31 1 1.2292 -3.2283 2.8774 32 1 1.7874 -5.0682 1.4275 33 1 3.3799 -4.8065 2.2181 34 1 4.9752 -2.7860 -0.4461 35 1 5.0662 -3.3379 1.2830 36 1 5.0064 -5.6983 0.6278 37 1 5.6757 -5.0814 -0.9444 38 1 2.9045 -5.8490 -0.6228 39 1 3.4351 -4.5736 -1.8025 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712529743.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:16 Heat of formation + Delta-G solvation = -23.747197 kcal Electronic energy + Delta-G solvation = -17732.896270 eV Core-core repulsion = 15062.071167 eV Total energy + Delta-G solvation = -2670.825103 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.37487 -37.11882 -35.47682 -32.51003 -31.90643 -29.03090 -26.94106 -25.74565 -25.54581 -23.59783 -22.47171 -20.93223 -19.92661 -18.72638 -16.54411 -16.23456 -15.99865 -15.10258 -14.74332 -14.45034 -14.02123 -13.89272 -13.21176 -13.04465 -12.49663 -12.22005 -12.05903 -11.84592 -11.62774 -11.48421 -11.18547 -11.02516 -10.97459 -10.83133 -10.80277 -10.55002 -10.45563 -10.27031 -10.15268 -9.73991 -9.23064 -8.90630 -8.36732 -7.07815 -5.96042 -3.96598 3.38439 3.41625 3.45597 3.98177 4.47510 4.50381 4.61048 4.68030 4.80047 4.90750 5.02279 5.18518 5.33015 5.39169 5.45653 5.64343 5.66464 5.72080 5.81457 5.84430 5.85564 5.88968 5.98917 6.07604 6.12796 6.24526 6.36074 6.39249 6.42805 6.56575 6.83211 7.35911 7.40951 7.55350 7.88599 8.18561 8.30802 8.65234 9.11122 9.67061 11.15012 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.032899 B = 0.005441 C = 0.005118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.894238 B = 5144.626971 C = 5470.006858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.531 5.531 3 C 0.193 3.807 4 C -0.504 4.504 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.901 5.901 8 Si 0.898 3.102 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.048 3.952 13 C 0.086 3.914 14 H 0.076 0.924 15 C -0.151 4.151 16 C -0.129 4.129 17 C 0.079 3.921 18 C -0.149 4.149 19 C -0.140 4.140 20 C -0.128 4.128 21 O -0.336 6.336 22 H 0.007 0.993 23 H 0.074 0.926 24 H 0.045 0.955 25 H -0.012 1.012 26 H 0.028 0.972 27 H 0.261 0.739 28 H 0.029 0.971 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.807 -17.459 5.395 18.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.255 5.255 3 C 0.068 3.932 4 C -0.542 4.542 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.541 5.541 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.202 1.202 12 C -0.081 4.081 13 C 0.028 3.972 14 H 0.094 0.906 15 C -0.189 4.189 16 C -0.167 4.167 17 C 0.039 3.961 18 C -0.187 4.187 19 C -0.178 4.178 20 C -0.166 4.166 21 O -0.254 6.254 22 H 0.026 0.974 23 H 0.092 0.908 24 H 0.064 0.936 25 H 0.006 0.994 26 H 0.046 0.954 27 H 0.070 0.930 28 H 0.047 0.953 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.111 0.889 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.026 -17.414 4.783 18.088 hybrid contribution -0.421 1.003 0.204 1.107 sum 0.605 -16.411 4.987 17.163 Atomic orbital electron populations 1.22256 0.89282 0.99402 1.00310 1.62028 1.06509 1.17397 1.39573 1.19724 0.95310 0.81674 0.96479 1.21150 1.34578 0.96785 1.01708 0.91894 1.24989 0.95385 0.97353 0.96965 1.69953 1.38634 1.11417 1.34129 0.86557 0.78658 0.78253 0.83918 1.20318 1.21409 1.20156 1.22410 1.00559 0.92404 0.92711 1.22863 0.96488 0.93177 0.84674 0.90624 1.23185 1.01705 0.95717 0.98272 1.22888 1.00718 0.97511 0.95548 1.23068 0.90615 0.88601 0.93810 1.23339 0.96096 0.97139 1.02100 1.22726 0.97154 0.97220 1.00677 1.23034 0.96135 0.97573 0.99844 1.88523 1.57688 1.48940 1.30288 0.97423 0.90766 0.93626 0.99394 0.95370 0.92972 0.95338 0.91114 0.90438 0.90378 0.90417 0.90236 0.88936 0.91518 0.90392 0.91039 0.91308 0.89159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 9.15 60.06 0.55 1.30 16 2 N -0.53 -12.30 4.73 -244.37 -1.16 -13.46 16 3 C 0.19 5.30 4.72 -4.97 -0.02 5.27 16 4 C -0.50 -14.75 8.46 -34.44 -0.29 -15.04 16 5 H 0.06 1.83 7.12 -52.49 -0.37 1.46 16 6 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 7 N -0.90 -27.51 13.29 55.43 0.74 -26.78 16 8 Si 0.90 22.27 29.54 -169.99 -5.02 17.25 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 C 0.05 0.92 4.50 -3.83 -0.02 0.91 16 13 C 0.09 1.37 3.49 -25.97 -0.09 1.28 16 14 H 0.08 1.20 6.33 -51.93 -0.33 0.87 16 15 C -0.15 -1.81 6.56 -24.66 -0.16 -1.97 16 16 C -0.13 -1.41 6.21 -24.86 -0.15 -1.56 16 17 C 0.08 1.07 1.44 -90.19 -0.13 0.94 16 18 C -0.15 -1.89 7.58 -26.30 -0.20 -2.09 16 19 C -0.14 -1.42 7.90 -25.76 -0.20 -1.63 16 20 C -0.13 -1.49 7.64 -26.31 -0.20 -1.69 16 21 O -0.34 -5.95 10.79 -35.23 -0.38 -6.33 16 22 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 23 H 0.07 1.64 6.76 -51.93 -0.35 1.29 16 24 H 0.05 0.82 6.37 -51.93 -0.33 0.49 16 25 H -0.01 -0.34 8.12 -51.93 -0.42 -0.76 16 26 H 0.03 0.82 7.93 -51.93 -0.41 0.41 16 27 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 28 H 0.03 0.52 8.12 -51.93 -0.42 0.10 16 29 H 0.07 1.40 7.93 -51.93 -0.41 0.99 16 30 H 0.08 0.92 7.85 -51.93 -0.41 0.51 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.08 0.73 8.04 -51.93 -0.42 0.31 16 34 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.07 0.78 8.11 -51.93 -0.42 0.36 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.69 8.11 -51.93 -0.42 0.27 16 39 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 308.88 15.07 4.65 4.65 Total: -1.00 -31.74 308.88 -9.00 -40.74 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -6.81 Total: -3.27 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: -1.02 Total: -12.81 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: -0.42 Total: -40.24 kcal Atomic # 8 Polarization: -5.95 SS G_CDS: -0.38 Total: -6.33 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.74 -9.00 -40.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712529743.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.988 kcal (2) G-P(sol) polarization free energy of solvation -31.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds