Wall clock time and date at job start Mon Mar 30 2020 04:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46901 * 110.99956 * 2 1 4 4 C 1.50704 * 109.47024 * 293.95773 * 3 2 1 5 5 H 1.08001 * 120.00219 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99799 * 179.97438 * 4 3 2 7 7 N 1.31509 * 120.00247 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 119.99797 * 179.97438 * 6 4 3 9 9 H 1.48507 * 109.47052 * 59.99876 * 8 6 4 10 10 H 1.48495 * 109.47223 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47326 * 299.99835 * 8 6 4 12 12 C 1.46899 * 111.00291 * 123.95384 * 2 1 3 13 13 C 1.52999 * 109.46972 * 66.04950 * 12 2 1 14 14 H 1.09002 * 109.82483 * 305.70133 * 13 12 2 15 15 C 1.54459 * 109.90646 * 184.76102 * 13 12 2 16 16 C 1.55462 * 102.35787 * 219.08662 * 15 13 12 17 17 C 1.54087 * 100.80128 * 33.20419 * 16 15 13 18 18 C 1.52877 * 115.02703 * 94.63749 * 17 16 15 19 19 C 1.53942 * 86.80921 * 91.88417 * 18 17 16 20 20 C 1.52872 * 115.03878 * 194.76001 * 17 16 15 21 21 O 1.42643 * 106.36235 * 324.71976 * 17 16 15 22 22 H 1.08996 * 109.47043 * 296.04136 * 1 2 3 23 23 H 1.08995 * 109.47593 * 56.04913 * 1 2 3 24 24 H 1.09002 * 109.46680 * 176.04317 * 1 2 3 25 25 H 1.09004 * 109.46899 * 53.95102 * 3 2 1 26 26 H 1.09000 * 109.47677 * 173.95493 * 3 2 1 27 27 H 0.96999 * 119.99872 * 180.02562 * 7 6 4 28 28 H 1.09000 * 109.47127 * 306.04557 * 12 2 1 29 29 H 1.09003 * 109.47137 * 186.04765 * 12 2 1 30 30 H 1.08993 * 110.82787 * 337.30556 * 15 13 12 31 31 H 1.08997 * 110.82564 * 100.86862 * 15 13 12 32 32 H 1.09004 * 111.15235 * 275.31287 * 16 15 13 33 33 H 1.09006 * 111.15154 * 151.09094 * 16 15 13 34 34 H 1.09000 * 113.65946 * 206.36661 * 18 17 16 35 35 H 1.09001 * 113.65049 * 337.40885 * 18 17 16 36 36 H 1.09005 * 113.59169 * 270.16937 * 19 18 17 37 37 H 1.09003 * 113.58755 * 139.35056 * 19 18 17 38 38 H 1.08997 * 113.65804 * 22.61114 * 20 17 16 39 39 H 1.09006 * 113.65649 * 153.55540 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0472 -1.2984 5 1 1.0745 1.5113 -2.0488 6 6 2.0266 3.3496 -1.5284 7 7 2.7109 4.0023 -0.6146 8 14 1.5827 4.1869 -3.1382 9 1 0.1055 4.2230 -3.2865 10 1 2.1137 5.5737 -3.1377 11 1 2.1754 3.4299 -4.2699 12 6 1.9955 -0.7660 1.1376 13 6 1.6316 -2.2426 0.9702 14 1 0.5554 -2.3446 0.8303 15 6 2.0756 -3.0382 2.2175 16 6 2.6013 -4.3632 1.5972 17 6 3.1785 -3.8490 0.2643 18 6 4.6749 -3.5363 0.2852 19 6 4.8964 -4.9842 -0.1885 20 6 3.4736 -4.9318 -0.7737 21 8 2.3238 -2.7894 -0.1616 22 1 -0.3633 0.4511 0.9233 23 1 -0.3634 0.5739 -0.8524 24 1 -0.3633 -1.0253 -0.0709 25 1 1.5610 1.9274 0.8309 26 1 3.0797 1.3445 0.1082 27 1 2.9848 4.9186 -0.7763 28 1 1.5612 -0.3872 2.0628 29 1 3.0798 -0.6610 1.1756 30 1 2.8718 -2.5156 2.7474 31 1 1.2292 -3.2283 2.8774 32 1 1.7874 -5.0682 1.4275 33 1 3.3799 -4.8065 2.2181 34 1 4.9752 -2.7860 -0.4461 35 1 5.0662 -3.3379 1.2830 36 1 5.0064 -5.6983 0.6278 37 1 5.6757 -5.0814 -0.9444 38 1 2.9045 -5.8490 -0.6228 39 1 3.4351 -4.5736 -1.8025 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712529743.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:16 Heat of formation + Delta-G solvation = -44.757641 kcal Electronic energy + Delta-G solvation = -17733.807352 eV Core-core repulsion = 15062.071167 eV Total energy + Delta-G solvation = -2671.736184 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.43057 -38.60649 -36.90663 -34.67357 -33.03239 -30.54600 -28.86943 -27.18840 -26.64983 -25.14717 -23.58407 -22.43523 -21.51079 -19.72863 -18.54787 -17.63413 -17.08568 -16.67619 -16.12788 -16.03796 -15.61730 -15.51256 -14.55605 -14.29966 -13.98372 -13.65661 -13.40104 -13.26598 -13.00022 -12.85541 -12.65361 -12.64526 -12.45451 -12.37227 -12.22183 -11.97238 -11.84883 -11.73657 -11.42837 -11.15195 -11.11047 -10.63237 -10.20431 -8.94836 -8.21917 -6.32512 1.38981 1.43282 1.51228 2.39295 2.88752 3.09905 3.37154 3.55582 3.70485 3.72736 3.88682 3.92710 4.09356 4.21085 4.36358 4.46056 4.54088 4.64578 4.65750 4.71774 4.82397 4.86314 4.88995 4.95158 4.98689 5.04524 5.08026 5.12393 5.14433 5.24959 5.28141 5.39891 5.52483 5.62828 6.03267 6.32901 6.40958 6.67391 6.83312 7.37080 8.89204 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.032899 B = 0.005441 C = 0.005118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.894238 B = 5144.626971 C = 5470.006858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.546 5.546 3 C 0.209 3.791 4 C -0.526 4.526 5 H 0.060 0.940 6 C 0.001 3.999 7 N -0.936 5.936 8 Si 0.972 3.028 9 H -0.265 1.265 10 H -0.280 1.280 11 H -0.270 1.270 12 C 0.049 3.951 13 C 0.088 3.912 14 H 0.079 0.921 15 C -0.144 4.144 16 C -0.117 4.117 17 C 0.061 3.939 18 C -0.160 4.160 19 C -0.122 4.122 20 C -0.129 4.129 21 O -0.374 6.374 22 H 0.013 0.987 23 H 0.055 0.945 24 H 0.077 0.923 25 H -0.038 1.038 26 H -0.004 1.004 27 H 0.265 0.735 28 H 0.038 0.962 29 H 0.052 0.948 30 H 0.076 0.924 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.104 0.896 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.105 0.895 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.173 -19.418 5.597 20.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.270 5.270 3 C 0.083 3.917 4 C -0.564 4.564 5 H 0.079 0.921 6 C -0.197 4.197 7 N -0.576 5.576 8 Si 0.796 3.204 9 H -0.190 1.190 10 H -0.205 1.205 11 H -0.195 1.195 12 C -0.080 4.080 13 C 0.030 3.970 14 H 0.097 0.903 15 C -0.182 4.182 16 C -0.154 4.154 17 C 0.021 3.979 18 C -0.198 4.198 19 C -0.159 4.159 20 C -0.166 4.166 21 O -0.294 6.294 22 H 0.031 0.969 23 H 0.074 0.926 24 H 0.095 0.905 25 H -0.020 1.020 26 H 0.015 0.985 27 H 0.074 0.926 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.095 0.905 31 H 0.122 0.878 32 H 0.111 0.889 33 H 0.123 0.877 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.124 0.876 37 H 0.095 0.905 38 H 0.109 0.891 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.387 -19.401 4.995 20.038 hybrid contribution -0.188 1.601 0.166 1.621 sum 0.199 -17.800 5.161 18.534 Atomic orbital electron populations 1.22229 0.87650 1.01090 0.99732 1.61946 1.08100 1.14904 1.42058 1.19364 0.93267 0.83989 0.95086 1.21435 1.35052 0.97550 1.02333 0.92148 1.25951 0.94904 0.97950 1.00901 1.70082 1.39332 1.11896 1.36297 0.85398 0.78948 0.77150 0.78887 1.19006 1.20484 1.19534 1.22505 0.99328 0.94499 0.91656 1.22841 0.96563 0.91085 0.86529 0.90300 1.23176 1.02691 0.95641 0.96707 1.22899 1.01699 0.96980 0.93835 1.23524 0.90156 0.88254 0.95949 1.23346 0.96349 0.98311 1.01778 1.22712 0.96324 0.95566 1.01334 1.23036 0.97498 0.97711 0.98401 1.88484 1.58582 1.50517 1.31800 0.96856 0.92625 0.90487 1.02005 0.98543 0.92606 0.94448 0.92956 0.90525 0.87820 0.88873 0.87741 0.92169 0.90706 0.87635 0.90506 0.89134 0.91147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.71 9.15 127.69 1.17 2.88 16 2 N -0.55 -26.04 4.73 -927.05 -4.38 -30.42 16 3 C 0.21 12.03 4.72 85.56 0.40 12.43 16 4 C -0.53 -31.66 8.46 25.60 0.22 -31.45 16 5 H 0.06 3.59 7.12 -2.91 -0.02 3.57 16 6 C 0.00 0.04 5.46 84.66 0.46 0.51 16 7 N -0.94 -58.40 13.29 21.45 0.28 -58.12 16 8 Si 0.97 46.01 29.54 68.60 2.03 48.04 16 9 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 12 C 0.05 1.90 4.50 86.30 0.39 2.29 16 13 C 0.09 2.72 3.49 31.09 0.11 2.83 16 14 H 0.08 2.37 6.33 -2.39 -0.02 2.35 16 15 C -0.14 -3.10 6.56 31.94 0.21 -2.89 16 16 C -0.12 -2.14 6.21 31.81 0.20 -1.95 16 17 C 0.06 1.55 1.44 -10.51 -0.02 1.53 16 18 C -0.16 -3.99 7.58 30.87 0.23 -3.76 16 19 C -0.12 -2.20 7.90 31.22 0.25 -1.95 16 20 C -0.13 -2.78 7.64 30.87 0.24 -2.55 16 21 O -0.37 -13.23 10.79 -148.98 -1.61 -14.84 16 22 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 23 H 0.05 2.49 6.76 -2.39 -0.02 2.47 16 24 H 0.08 2.69 6.37 -2.39 -0.02 2.67 16 25 H -0.04 -2.30 8.12 -2.38 -0.02 -2.32 16 26 H 0.00 -0.22 7.93 -2.39 -0.02 -0.24 16 27 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 28 H 0.04 1.38 8.12 -2.39 -0.02 1.36 16 29 H 0.05 2.19 7.93 -2.39 -0.02 2.17 16 30 H 0.08 1.67 7.85 -2.39 -0.02 1.65 16 31 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.10 1.43 8.04 -2.38 -0.02 1.41 16 34 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.07 1.68 8.11 -2.39 -0.02 1.66 16 36 H 0.11 1.37 8.14 -2.38 -0.02 1.35 16 37 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.09 1.54 8.11 -2.39 -0.02 1.52 16 39 H 0.07 1.77 8.14 -2.38 -0.02 1.76 16 Total: -1.00 -70.81 308.88 1.17 -69.64 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: 0.99 Total: 7.78 kcal Atomic # 6 Polarization: -25.93 SS G_CDS: 3.86 Total: -22.07 kcal Atomic # 7 Polarization: -84.44 SS G_CDS: -4.10 Total: -88.54 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: -1.61 Total: -14.84 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -70.81 1.17 -69.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712529743.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.883 kcal (2) G-P(sol) polarization free energy of solvation -70.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds