Wall clock time and date at job start Mon Mar 30 2020 03:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50701 * 119.99826 * 2 1 4 4 C 1.53000 * 109.46860 * 125.27738 * 3 2 1 5 5 O 1.42898 * 109.52481 * 65.00152 * 4 3 2 6 6 C 1.53122 * 109.52510 * 304.87207 * 4 3 2 7 7 C 1.53038 * 109.28088 * 182.50459 * 6 4 3 8 8 N 1.46849 * 109.57475 * 59.08117 * 7 6 4 9 9 C 1.46897 * 111.00048 * 174.19249 * 8 7 6 10 10 H 1.09000 * 109.47326 * 179.20821 * 9 8 7 11 11 C 1.53004 * 109.46999 * 59.21665 * 9 8 7 12 12 C 1.50701 * 109.47584 * 299.21884 * 9 8 7 13 13 H 1.07997 * 119.99607 * 359.97438 * 12 9 8 14 14 C 1.37871 * 120.00132 * 180.02562 * 12 9 8 15 15 N 1.31517 * 120.00067 * 359.97438 * 14 12 9 16 16 Si 1.86801 * 119.99828 * 179.97438 * 14 12 9 17 17 H 1.48507 * 109.47215 * 89.99619 * 16 14 12 18 18 H 1.48498 * 109.47226 * 209.99506 * 16 14 12 19 19 H 1.48500 * 109.47420 * 329.99630 * 16 14 12 20 20 C 1.46844 * 111.19863 * 298.29559 * 8 7 6 21 21 C 1.53032 * 109.52585 * 61.74185 * 20 8 7 22 22 H 1.07998 * 120.00195 * 179.72135 * 1 2 3 23 23 H 1.08002 * 120.00350 * 359.72370 * 1 2 3 24 24 H 1.08002 * 120.00352 * 180.28242 * 2 1 3 25 25 H 1.08998 * 109.47474 * 245.27493 * 3 2 1 26 26 H 1.09001 * 109.47291 * 5.27780 * 3 2 1 27 27 H 0.96698 * 114.00137 * 300.00210 * 5 4 3 28 28 H 1.08999 * 109.50171 * 302.38842 * 6 4 3 29 29 H 1.09004 * 109.49898 * 62.50001 * 6 4 3 30 30 H 1.09012 * 109.40754 * 299.07566 * 7 6 4 31 31 H 1.08993 * 109.45941 * 179.13131 * 7 6 4 32 32 H 1.08997 * 109.47212 * 180.02562 * 11 9 8 33 33 H 1.09006 * 109.46818 * 299.99732 * 11 9 8 34 34 H 1.08997 * 109.47334 * 59.99524 * 11 9 8 35 35 H 0.97002 * 119.99571 * 180.02562 * 15 14 12 36 36 H 1.09001 * 109.46567 * 301.71930 * 20 8 7 37 37 H 1.09007 * 109.44998 * 181.74919 * 20 8 7 38 38 H 1.09000 * 109.50173 * 180.87866 * 21 20 8 39 39 H 1.09000 * 109.50550 * 60.75983 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0399 1.3302 1.1776 5 8 4.0343 0.3203 0.9951 6 6 2.2780 1.0687 2.4798 7 6 3.2487 1.1570 3.6597 8 7 3.8660 2.4890 3.6903 9 6 4.6990 2.6557 4.8887 10 1 5.1554 3.6456 4.8792 11 6 5.7957 1.5888 4.9000 12 6 3.8429 2.5089 6.1202 13 1 2.7855 2.3119 6.0223 14 6 4.4092 2.6272 7.3716 15 7 5.6967 2.8676 7.4908 16 14 3.3477 2.4459 8.8980 17 1 3.3220 1.0213 9.3168 18 1 3.9114 3.2740 9.9942 19 1 1.9657 2.8982 8.5966 20 6 4.6426 2.7425 2.4701 21 6 3.7132 2.7033 1.2549 22 1 -0.5400 -0.9353 -0.0045 23 1 -0.5401 0.9353 0.0045 24 1 1.8500 -0.9353 -0.0046 25 1 2.6173 1.4049 -0.9334 26 1 1.3589 2.1314 0.0945 27 1 3.6780 -0.5769 0.9395 28 1 1.4933 1.8159 2.5986 29 1 1.8325 0.0744 2.4474 30 1 4.0247 0.3996 3.5477 31 1 2.7063 0.9865 4.5896 32 1 6.4135 1.7122 5.7894 33 1 5.3394 0.5989 4.9095 34 1 6.4150 1.6949 4.0093 35 1 6.0951 2.9504 8.3713 36 1 5.4120 1.9778 2.3638 37 1 5.1126 3.7238 2.5363 38 1 4.2926 2.8760 0.3480 39 1 2.9518 3.4769 1.3540 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717400179.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:02 Heat of formation + Delta-G solvation = -35.078224 kcal Electronic energy + Delta-G solvation = -18179.320230 eV Core-core repulsion = 15508.003777 eV Total energy + Delta-G solvation = -2671.316453 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.49464 -36.58491 -34.18317 -33.21598 -31.35202 -30.28324 -28.62582 -26.24007 -25.18243 -22.67105 -22.39105 -20.26177 -19.66198 -18.78304 -16.26501 -16.10363 -15.56309 -15.10627 -14.61150 -14.19569 -13.88613 -13.74458 -13.14422 -12.88013 -12.70509 -12.30496 -12.00359 -11.66634 -11.34547 -11.33001 -11.07856 -11.04729 -10.80865 -10.62728 -10.54365 -10.21684 -10.10169 -9.98760 -9.60022 -9.53876 -9.11536 -8.74477 -8.33883 -6.99581 -5.96141 -3.99693 2.18666 3.32946 3.39546 3.43522 4.41912 4.46720 4.71276 4.96191 5.08337 5.12224 5.21895 5.35142 5.36603 5.64052 5.77988 5.80594 5.90414 6.03604 6.11494 6.15905 6.29342 6.32450 6.51833 6.53923 6.66528 6.67371 6.76342 6.84323 6.94193 6.98630 7.24411 7.60639 7.80710 7.87588 7.90522 8.22254 8.48379 8.69959 9.06672 9.65124 11.10947 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.034587 B = 0.006373 C = 0.005768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.368962 B = 4392.443108 C = 4853.316262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.150 4.150 3 C -0.120 4.120 4 C 0.139 3.861 5 O -0.554 6.554 6 C -0.138 4.138 7 C 0.067 3.933 8 N -0.532 5.532 9 C 0.211 3.789 10 H 0.038 0.962 11 C -0.170 4.170 12 C -0.498 4.498 13 H 0.061 0.939 14 C 0.058 3.942 15 N -0.894 5.894 16 Si 0.895 3.105 17 H -0.283 1.283 18 H -0.287 1.287 19 H -0.274 1.274 20 C 0.056 3.944 21 C -0.099 4.099 22 H 0.095 0.905 23 H 0.096 0.904 24 H 0.106 0.894 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.367 0.633 28 H 0.072 0.928 29 H 0.058 0.942 30 H 0.029 0.971 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.028 0.972 34 H 0.008 0.992 35 H 0.259 0.741 36 H 0.035 0.965 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.604 -4.538 -13.407 15.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.168 4.168 3 C -0.158 4.158 4 C 0.098 3.902 5 O -0.360 6.360 6 C -0.176 4.176 7 C -0.062 4.062 8 N -0.256 5.256 9 C 0.105 3.895 10 H 0.056 0.944 11 C -0.229 4.229 12 C -0.537 4.537 13 H 0.080 0.920 14 C -0.143 4.143 15 N -0.534 5.534 16 Si 0.723 3.277 17 H -0.209 1.209 18 H -0.213 1.213 19 H -0.199 1.199 20 C -0.072 4.072 21 C -0.136 4.136 22 H 0.113 0.887 23 H 0.114 0.886 24 H 0.124 0.876 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.213 0.787 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.048 0.952 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.047 0.953 34 H 0.027 0.973 35 H 0.069 0.931 36 H 0.053 0.947 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.449 -3.614 -13.219 15.146 hybrid contribution -0.259 -1.262 0.827 1.531 sum -6.708 -4.876 -12.392 14.911 Atomic orbital electron populations 1.23812 0.95897 1.01738 1.01760 1.22862 0.96107 0.98403 0.99435 1.21502 0.98796 0.95818 0.99677 1.21235 0.87241 0.89219 0.92486 1.86578 1.35815 1.17835 1.95747 1.22295 0.98981 1.01130 0.95184 1.21842 0.96233 0.90962 0.97128 1.62275 1.33964 1.27118 1.02233 1.19267 0.89504 0.94686 0.86044 0.94433 1.22370 1.00725 0.99396 1.00385 1.21133 0.94909 1.47862 0.89782 0.92038 1.24929 0.94988 0.95456 0.98951 1.69898 1.10391 1.49786 1.23315 0.86553 0.80633 0.77843 0.82696 1.20883 1.21319 1.19900 1.21902 0.94825 1.00260 0.90252 1.21582 0.99578 0.93999 0.98484 0.88701 0.88587 0.87626 0.90555 0.90616 0.78689 0.90967 0.92298 0.95241 0.90218 0.89598 0.95309 0.97270 0.93087 0.94652 0.91928 0.91973 0.90420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.86 14.32 29.02 0.42 -1.45 16 2 C -0.15 -1.52 7.66 -36.02 -0.28 -1.80 16 3 C -0.12 -1.37 4.97 -27.88 -0.14 -1.50 16 4 C 0.14 1.96 0.74 -90.49 -0.07 1.89 16 5 O -0.55 -8.14 11.84 -35.23 -0.42 -8.56 16 6 C -0.14 -2.16 4.71 -26.65 -0.13 -2.28 16 7 C 0.07 1.34 4.53 -3.83 -0.02 1.32 16 8 N -0.53 -11.66 4.64 -228.08 -1.06 -12.72 16 9 C 0.21 5.44 2.35 -68.86 -0.16 5.28 16 10 H 0.04 1.07 8.08 -51.93 -0.42 0.65 16 11 C -0.17 -4.26 8.28 37.16 0.31 -3.96 16 12 C -0.50 -13.77 7.86 -34.44 -0.27 -14.05 16 13 H 0.06 1.70 6.76 -52.49 -0.35 1.34 16 14 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 15 N -0.89 -25.81 11.32 55.43 0.63 -25.19 16 16 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 20 C 0.06 1.08 4.89 -3.84 -0.02 1.07 16 21 C -0.10 -1.53 5.11 -26.65 -0.14 -1.67 16 22 H 0.09 0.79 8.06 -52.49 -0.42 0.37 16 23 H 0.10 0.89 7.84 -52.49 -0.41 0.48 16 24 H 0.11 0.95 7.22 -52.49 -0.38 0.57 16 25 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.08 0.84 7.79 -51.93 -0.40 0.43 16 27 H 0.37 4.13 7.76 45.56 0.35 4.48 16 28 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.06 0.82 7.19 -51.93 -0.37 0.45 16 30 H 0.03 0.62 6.24 -51.92 -0.32 0.29 16 31 H 0.08 1.74 6.35 -51.93 -0.33 1.41 16 32 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 33 H 0.03 0.70 6.52 -51.93 -0.34 0.36 16 34 H 0.01 0.20 6.65 -51.93 -0.35 -0.15 16 35 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 36 H 0.04 0.73 6.35 -51.93 -0.33 0.40 16 37 H 0.06 1.20 8.08 -51.93 -0.42 0.78 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 297.19 15.07 4.48 4.48 Total: -1.00 -29.37 297.19 -7.61 -36.98 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -5.64 Total: 4.15 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: -0.58 Total: -15.64 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: -0.43 Total: -37.91 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: -0.42 Total: -8.56 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.37 -7.61 -36.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717400179.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.903 kcal (2) G-P(sol) polarization free energy of solvation -29.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds