Wall clock time and date at job start Mon Mar 30 2020 03:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50701 * 119.99826 * 2 1 4 4 C 1.53000 * 109.46860 * 125.27738 * 3 2 1 5 5 O 1.42898 * 109.52481 * 65.00152 * 4 3 2 6 6 C 1.53122 * 109.52510 * 304.87207 * 4 3 2 7 7 C 1.53038 * 109.28088 * 182.50459 * 6 4 3 8 8 N 1.46849 * 109.57475 * 59.08117 * 7 6 4 9 9 C 1.46897 * 111.00048 * 174.19249 * 8 7 6 10 10 H 1.09000 * 109.47326 * 179.20821 * 9 8 7 11 11 C 1.53004 * 109.46999 * 59.21665 * 9 8 7 12 12 C 1.50701 * 109.47584 * 299.21884 * 9 8 7 13 13 H 1.07997 * 119.99607 * 359.97438 * 12 9 8 14 14 C 1.37871 * 120.00132 * 180.02562 * 12 9 8 15 15 N 1.31517 * 120.00067 * 359.97438 * 14 12 9 16 16 Si 1.86801 * 119.99828 * 179.97438 * 14 12 9 17 17 H 1.48507 * 109.47215 * 89.99619 * 16 14 12 18 18 H 1.48498 * 109.47226 * 209.99506 * 16 14 12 19 19 H 1.48500 * 109.47420 * 329.99630 * 16 14 12 20 20 C 1.46844 * 111.19863 * 298.29559 * 8 7 6 21 21 C 1.53032 * 109.52585 * 61.74185 * 20 8 7 22 22 H 1.07998 * 120.00195 * 179.72135 * 1 2 3 23 23 H 1.08002 * 120.00350 * 359.72370 * 1 2 3 24 24 H 1.08002 * 120.00352 * 180.28242 * 2 1 3 25 25 H 1.08998 * 109.47474 * 245.27493 * 3 2 1 26 26 H 1.09001 * 109.47291 * 5.27780 * 3 2 1 27 27 H 0.96698 * 114.00137 * 300.00210 * 5 4 3 28 28 H 1.08999 * 109.50171 * 302.38842 * 6 4 3 29 29 H 1.09004 * 109.49898 * 62.50001 * 6 4 3 30 30 H 1.09012 * 109.40754 * 299.07566 * 7 6 4 31 31 H 1.08993 * 109.45941 * 179.13131 * 7 6 4 32 32 H 1.08997 * 109.47212 * 180.02562 * 11 9 8 33 33 H 1.09006 * 109.46818 * 299.99732 * 11 9 8 34 34 H 1.08997 * 109.47334 * 59.99524 * 11 9 8 35 35 H 0.97002 * 119.99571 * 180.02562 * 15 14 12 36 36 H 1.09001 * 109.46567 * 301.71930 * 20 8 7 37 37 H 1.09007 * 109.44998 * 181.74919 * 20 8 7 38 38 H 1.09000 * 109.50173 * 180.87866 * 21 20 8 39 39 H 1.09000 * 109.50550 * 60.75983 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0399 1.3302 1.1776 5 8 4.0343 0.3203 0.9951 6 6 2.2780 1.0687 2.4798 7 6 3.2487 1.1570 3.6597 8 7 3.8660 2.4890 3.6903 9 6 4.6990 2.6557 4.8887 10 1 5.1554 3.6456 4.8792 11 6 5.7957 1.5888 4.9000 12 6 3.8429 2.5089 6.1202 13 1 2.7855 2.3119 6.0223 14 6 4.4092 2.6272 7.3716 15 7 5.6967 2.8676 7.4908 16 14 3.3477 2.4459 8.8980 17 1 3.3220 1.0213 9.3168 18 1 3.9114 3.2740 9.9942 19 1 1.9657 2.8982 8.5966 20 6 4.6426 2.7425 2.4701 21 6 3.7132 2.7033 1.2549 22 1 -0.5400 -0.9353 -0.0045 23 1 -0.5401 0.9353 0.0045 24 1 1.8500 -0.9353 -0.0046 25 1 2.6173 1.4049 -0.9334 26 1 1.3589 2.1314 0.0945 27 1 3.6780 -0.5769 0.9395 28 1 1.4933 1.8159 2.5986 29 1 1.8325 0.0744 2.4474 30 1 4.0247 0.3996 3.5477 31 1 2.7063 0.9865 4.5896 32 1 6.4135 1.7122 5.7894 33 1 5.3394 0.5989 4.9095 34 1 6.4150 1.6949 4.0093 35 1 6.0951 2.9504 8.3713 36 1 5.4120 1.9778 2.3638 37 1 5.1126 3.7238 2.5363 38 1 4.2926 2.8760 0.3480 39 1 2.9518 3.4769 1.3540 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717400179.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:01 Heat of formation + Delta-G solvation = -55.302488 kcal Electronic energy + Delta-G solvation = -18180.197220 eV Core-core repulsion = 15508.003777 eV Total energy + Delta-G solvation = -2672.193443 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.81537 -38.13289 -35.10790 -35.02430 -32.95624 -31.72559 -30.18384 -27.61385 -27.27363 -24.14012 -23.88073 -21.83529 -20.47620 -20.30611 -18.19362 -17.37326 -17.12873 -16.45039 -15.97884 -15.77726 -15.42432 -15.16274 -14.61227 -14.27235 -13.95662 -13.75842 -13.54911 -13.14523 -13.01847 -12.97673 -12.60068 -12.42903 -12.37279 -12.21038 -12.04929 -11.98677 -11.83801 -11.60089 -10.97215 -10.93765 -10.71999 -10.48895 -10.00200 -8.78927 -8.10199 -6.21371 1.42100 1.42853 1.45640 1.53800 2.43134 3.18466 3.30309 3.52153 3.78453 3.92192 3.97752 4.27274 4.34883 4.41435 4.58776 4.65981 4.69170 4.74769 4.80394 4.86995 4.91684 4.99218 5.05743 5.11876 5.14952 5.17597 5.23962 5.31647 5.43385 5.56151 5.72402 5.79515 5.81095 5.93568 6.21534 6.52787 6.79846 6.92461 6.93581 7.47907 8.96325 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.034587 B = 0.006373 C = 0.005768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.368962 B = 4392.443108 C = 4853.316262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.163 4.163 3 C -0.110 4.110 4 C 0.143 3.857 5 O -0.570 6.570 6 C -0.127 4.127 7 C 0.070 3.930 8 N -0.537 5.537 9 C 0.214 3.786 10 H 0.003 0.997 11 C -0.152 4.152 12 C -0.513 4.513 13 H 0.057 0.943 14 C 0.009 3.991 15 N -0.922 5.922 16 Si 0.960 3.040 17 H -0.276 1.276 18 H -0.284 1.284 19 H -0.268 1.268 20 C 0.056 3.944 21 C -0.096 4.096 22 H 0.107 0.893 23 H 0.097 0.903 24 H 0.117 0.883 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.382 0.618 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.017 0.983 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.027 0.973 34 H 0.019 0.981 35 H 0.261 0.739 36 H 0.020 0.980 37 H 0.055 0.945 38 H 0.080 0.920 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.296 -5.330 -14.556 17.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.181 4.181 3 C -0.147 4.147 4 C 0.103 3.897 5 O -0.378 6.378 6 C -0.165 4.165 7 C -0.058 4.058 8 N -0.261 5.261 9 C 0.107 3.893 10 H 0.021 0.979 11 C -0.212 4.212 12 C -0.552 4.552 13 H 0.076 0.924 14 C -0.189 4.189 15 N -0.562 5.562 16 Si 0.786 3.214 17 H -0.202 1.202 18 H -0.209 1.209 19 H -0.193 1.193 20 C -0.072 4.072 21 C -0.134 4.134 22 H 0.125 0.875 23 H 0.116 0.884 24 H 0.135 0.865 25 H 0.102 0.898 26 H 0.099 0.901 27 H 0.231 0.769 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.035 0.965 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.046 0.954 34 H 0.038 0.962 35 H 0.070 0.930 36 H 0.038 0.962 37 H 0.073 0.927 38 H 0.099 0.901 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.154 -4.419 -14.390 17.120 hybrid contribution 0.292 -1.016 1.155 1.566 sum -7.863 -5.435 -13.235 16.326 Atomic orbital electron populations 1.23995 0.95851 1.02510 1.00432 1.22901 0.96354 0.98244 1.00552 1.21355 0.98177 0.96862 0.98310 1.21141 0.87369 0.88309 0.92874 1.86545 1.36542 1.19002 1.95731 1.22220 0.97849 1.02429 0.94043 1.21810 0.96412 0.89386 0.98217 1.62206 1.33551 1.28467 1.01900 1.19041 0.89806 0.92870 0.87611 0.97901 1.22151 1.00283 0.99170 0.99578 1.21371 0.94918 1.48002 0.90863 0.92443 1.25729 0.96184 0.95048 1.01940 1.70030 1.11878 1.50322 1.24017 0.85520 0.79035 0.77998 0.78851 1.20164 1.20929 1.19286 1.21947 0.95286 0.99215 0.90740 1.21586 0.99278 0.95517 0.96988 0.87460 0.88422 0.86480 0.89845 0.90147 0.76919 0.91041 0.90145 0.96475 0.92613 0.92119 0.95399 0.96196 0.93008 0.96192 0.92690 0.90143 0.89662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.01 14.32 67.79 0.97 -2.04 16 2 C -0.16 -2.75 7.66 25.65 0.20 -2.55 16 3 C -0.11 -2.13 4.97 29.85 0.15 -1.99 16 4 C 0.14 3.72 0.74 -10.71 -0.01 3.71 16 5 O -0.57 -15.51 11.84 -148.98 -1.76 -17.27 16 6 C -0.13 -3.75 4.71 30.65 0.14 -3.61 16 7 C 0.07 2.79 4.53 86.33 0.39 3.18 16 8 N -0.54 -23.85 4.64 -875.50 -4.06 -27.91 16 9 C 0.21 11.37 2.35 44.17 0.10 11.47 16 10 H 0.00 0.18 8.08 -2.39 -0.02 0.16 16 11 C -0.15 -7.89 8.28 71.98 0.60 -7.29 16 12 C -0.51 -28.93 7.86 25.60 0.20 -28.73 16 13 H 0.06 3.22 6.76 -2.91 -0.02 3.20 16 14 C 0.01 0.52 5.30 84.65 0.45 0.97 16 15 N -0.92 -54.32 11.32 21.45 0.24 -54.07 16 16 Si 0.96 44.37 29.54 68.60 2.03 46.39 16 17 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 18 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 19 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 20 C 0.06 2.18 4.89 86.32 0.42 2.60 16 21 C -0.10 -2.81 5.11 30.65 0.16 -2.66 16 22 H 0.11 1.42 8.06 -2.91 -0.02 1.40 16 23 H 0.10 1.50 7.84 -2.91 -0.02 1.48 16 24 H 0.12 1.70 7.22 -2.91 -0.02 1.68 16 25 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.08 1.50 7.79 -2.39 -0.02 1.48 16 27 H 0.38 7.60 7.76 -74.06 -0.57 7.02 16 28 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.08 2.03 7.19 -2.38 -0.02 2.02 16 30 H 0.02 0.72 6.24 -2.38 -0.01 0.70 16 31 H 0.06 2.46 6.35 -2.39 -0.02 2.45 16 32 H 0.06 3.44 6.07 -2.39 -0.01 3.43 16 33 H 0.03 1.39 6.52 -2.38 -0.02 1.38 16 34 H 0.02 0.93 6.65 -2.39 -0.02 0.92 16 35 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 36 H 0.02 0.83 6.35 -2.39 -0.02 0.81 16 37 H 0.05 2.15 8.08 -2.38 -0.02 2.13 16 38 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -63.51 297.19 0.66 -62.85 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: 0.45 Total: 16.95 kcal Atomic # 6 Polarization: -30.71 SS G_CDS: 3.77 Total: -26.93 kcal Atomic # 7 Polarization: -78.17 SS G_CDS: -3.82 Total: -81.99 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -1.76 Total: -17.27 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -63.51 0.66 -62.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717400179.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.548 kcal (2) G-P(sol) polarization free energy of solvation -63.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds