Wall clock time and date at job start Mon Mar 30 2020 03:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50697 * 120.00082 * 2 1 4 4 C 1.52998 * 109.47260 * 125.00039 * 3 2 1 5 5 O 1.42905 * 109.52069 * 300.00003 * 4 3 2 6 6 C 1.53113 * 109.52206 * 60.12629 * 4 3 2 7 7 C 1.53171 * 109.20692 * 177.56202 * 6 4 3 8 8 N 1.46847 * 109.55949 * 300.86237 * 7 6 4 9 9 C 1.46905 * 110.99963 * 185.84024 * 8 7 6 10 10 H 1.08997 * 109.46859 * 185.78814 * 9 8 7 11 11 C 1.52993 * 109.47248 * 305.78763 * 9 8 7 12 12 C 1.50700 * 109.46824 * 65.79093 * 9 8 7 13 13 H 1.07995 * 120.00649 * 359.97438 * 12 9 8 14 14 C 1.37879 * 119.99437 * 180.02562 * 12 9 8 15 15 N 1.31511 * 119.99824 * 179.97438 * 14 12 9 16 16 Si 1.86802 * 120.00058 * 359.97438 * 14 12 9 17 17 H 1.48495 * 109.47012 * 90.00666 * 16 14 12 18 18 H 1.48506 * 109.46834 * 210.00261 * 16 14 12 19 19 H 1.48502 * 109.47227 * 330.00106 * 16 14 12 20 20 C 1.46850 * 111.19713 * 61.74251 * 8 7 6 21 21 C 1.53036 * 109.52213 * 298.25889 * 20 8 7 22 22 H 1.08003 * 120.00003 * 180.02562 * 1 2 3 23 23 H 1.07999 * 120.00051 * 359.97438 * 1 2 3 24 24 H 1.07999 * 120.00051 * 180.02562 * 2 1 3 25 25 H 1.09007 * 109.47235 * 5.00330 * 3 2 1 26 26 H 1.09001 * 109.47683 * 245.00279 * 3 2 1 27 27 H 0.96696 * 114.00036 * 59.99962 * 5 4 3 28 28 H 1.09000 * 109.50568 * 297.56446 * 6 4 3 29 29 H 1.08998 * 109.50381 * 57.68886 * 6 4 3 30 30 H 1.09005 * 109.44673 * 180.83039 * 7 6 4 31 31 H 1.09000 * 109.43965 * 60.88640 * 7 6 4 32 32 H 1.08994 * 109.47405 * 179.97438 * 11 9 8 33 33 H 1.09006 * 109.47331 * 300.00402 * 11 9 8 34 34 H 1.09007 * 109.46990 * 60.00201 * 11 9 8 35 35 H 0.97004 * 120.00024 * 179.97438 * 15 14 12 36 36 H 1.09003 * 109.45918 * 178.24546 * 20 8 7 37 37 H 1.08994 * 109.45442 * 58.27123 * 20 8 7 38 38 H 1.09001 * 109.50423 * 299.24028 * 21 20 8 39 39 H 1.08994 * 109.50257 * 179.11978 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 8 2.3048 1.2053 2.4033 6 6 4.0278 0.1743 1.0553 7 6 5.0340 0.2449 2.2080 8 7 5.7436 1.5297 2.1631 9 6 6.8127 1.5761 3.1697 10 1 7.2540 2.5726 3.1852 11 6 6.2303 1.2547 4.5474 12 6 7.8728 0.5625 2.8235 13 1 7.7633 -0.0547 1.9441 14 6 8.9822 0.4225 3.6302 15 7 9.9071 -0.4623 3.3284 16 14 9.1713 1.4895 5.1517 17 1 8.5475 0.8085 6.3145 18 1 10.6142 1.7121 5.4240 19 1 8.5029 2.7963 4.9262 20 6 4.8151 2.6552 2.3293 21 6 3.8035 2.6575 1.1810 22 1 -0.5400 -0.9353 0.0004 23 1 -0.5400 0.9353 0.0004 24 1 1.8500 -0.9353 -0.0004 25 1 1.3586 2.1317 0.0896 26 1 2.6213 1.4027 -0.9314 27 1 1.7950 0.3866 2.4731 28 1 3.4894 -0.7725 1.0976 29 1 4.5571 0.2505 0.1055 30 1 5.7518 -0.5700 2.1135 31 1 4.5054 0.1548 3.1570 32 1 7.0235 1.2887 5.2942 33 1 5.4634 1.9878 4.7978 34 1 5.7889 0.2581 4.5318 35 1 10.6878 -0.5606 3.8957 36 1 5.3740 3.5910 2.3229 37 1 4.2877 2.5537 3.2777 38 1 4.3293 2.7726 0.2331 39 1 3.1050 3.4836 1.3131 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717400182.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:04 Heat of formation + Delta-G solvation = -26.407714 kcal Electronic energy + Delta-G solvation = -18195.276703 eV Core-core repulsion = 15524.336232 eV Total energy + Delta-G solvation = -2670.940472 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.59992 -36.80187 -34.14144 -33.24556 -31.63716 -30.41369 -29.31476 -26.51135 -25.12315 -22.95739 -22.37509 -20.30113 -19.59236 -18.94488 -16.55370 -16.19323 -15.58224 -15.25094 -14.91657 -14.26980 -14.18512 -13.55839 -13.52740 -13.10667 -12.97013 -12.23170 -12.12927 -12.03774 -11.65059 -11.41435 -11.39877 -11.24982 -10.97832 -10.80115 -10.57329 -10.41855 -10.01464 -9.83662 -9.62512 -9.44680 -9.22944 -8.93764 -8.54078 -7.21471 -6.03133 -4.00446 2.11239 3.28988 3.39472 3.41440 4.38599 4.43302 4.65136 4.88119 4.93623 5.07617 5.14726 5.27422 5.29406 5.53845 5.67116 5.77249 5.84152 5.90408 6.00752 6.05227 6.16975 6.23335 6.27588 6.33563 6.42495 6.50246 6.53744 6.58365 6.63011 6.70781 6.78391 6.95284 7.27388 7.70607 7.83142 8.03255 8.18542 8.72071 9.04691 9.59894 11.10075 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.046878 B = 0.006091 C = 0.005841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.156441 B = 4596.088033 C = 4792.913155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.155 4.155 3 C -0.120 4.120 4 C 0.138 3.862 5 O -0.555 6.555 6 C -0.141 4.141 7 C 0.065 3.935 8 N -0.520 5.520 9 C 0.181 3.819 10 H 0.038 0.962 11 C -0.184 4.184 12 C -0.499 4.499 13 H 0.081 0.919 14 C 0.069 3.931 15 N -0.902 5.902 16 Si 0.886 3.114 17 H -0.281 1.281 18 H -0.297 1.297 19 H -0.269 1.269 20 C 0.053 3.947 21 C -0.098 4.098 22 H 0.095 0.905 23 H 0.094 0.906 24 H 0.112 0.888 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.368 0.632 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.031 0.969 32 H 0.042 0.958 33 H 0.029 0.971 34 H 0.055 0.945 35 H 0.263 0.737 36 H 0.064 0.936 37 H 0.035 0.965 38 H 0.080 0.920 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.396 2.805 -4.623 17.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.173 4.173 3 C -0.158 4.158 4 C 0.098 3.902 5 O -0.360 6.360 6 C -0.179 4.179 7 C -0.063 4.063 8 N -0.244 5.244 9 C 0.074 3.926 10 H 0.056 0.944 11 C -0.242 4.242 12 C -0.537 4.537 13 H 0.099 0.901 14 C -0.133 4.133 15 N -0.540 5.540 16 Si 0.717 3.283 17 H -0.209 1.209 18 H -0.225 1.225 19 H -0.194 1.194 20 C -0.075 4.075 21 C -0.136 4.136 22 H 0.114 0.886 23 H 0.113 0.887 24 H 0.130 0.870 25 H 0.089 0.911 26 H 0.100 0.900 27 H 0.215 0.785 28 H 0.079 0.921 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.048 0.952 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.053 0.947 38 H 0.098 0.902 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.719 3.366 -4.928 16.814 hybrid contribution -0.451 -0.208 1.586 1.662 sum -16.170 3.158 -3.342 16.811 Atomic orbital electron populations 1.23860 0.95950 1.01665 1.01699 1.23057 0.96011 0.98805 0.99411 1.21493 0.98890 0.95570 0.99809 1.21212 0.89640 0.96448 0.82948 1.86542 1.65708 1.44653 1.39131 1.22353 0.97303 0.97050 1.01202 1.21922 0.95149 0.93826 0.95404 1.62104 1.10905 1.00877 1.50487 1.19750 0.89648 0.98063 0.85185 0.94447 1.22794 0.99533 1.00595 1.01306 1.20949 1.02370 1.19187 1.11192 0.90092 1.24914 0.95682 0.95078 0.97583 1.69882 1.10431 1.34817 1.38912 0.86883 0.75858 0.81687 0.83830 1.20857 1.22515 1.19389 1.21970 0.93619 0.95447 0.96482 1.21564 0.96825 0.94755 1.00430 0.88641 0.88731 0.87031 0.91105 0.90011 0.78511 0.92076 0.90554 0.89656 0.95120 0.93942 0.95216 0.92633 0.92720 0.91735 0.94719 0.90153 0.91840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.71 14.32 29.01 0.42 -1.30 16 2 C -0.15 -1.51 7.91 -36.03 -0.29 -1.80 16 3 C -0.12 -1.31 4.94 -27.89 -0.14 -1.45 16 4 C 0.14 1.85 0.73 -90.50 -0.07 1.79 16 5 O -0.55 -7.84 11.81 -35.23 -0.42 -8.26 16 6 C -0.14 -2.10 4.78 -26.58 -0.13 -2.22 16 7 C 0.07 1.25 4.41 -3.76 -0.02 1.23 16 8 N -0.52 -10.86 4.60 -227.99 -1.05 -11.91 16 9 C 0.18 4.37 1.90 -68.86 -0.13 4.24 16 10 H 0.04 0.94 7.05 -51.93 -0.37 0.58 16 11 C -0.18 -4.15 7.93 37.15 0.29 -3.86 16 12 C -0.50 -14.00 8.46 -34.44 -0.29 -14.29 16 13 H 0.08 2.47 7.36 -52.49 -0.39 2.09 16 14 C 0.07 1.98 5.45 -17.82 -0.10 1.89 16 15 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 16 Si 0.89 22.25 24.37 -169.99 -4.14 18.11 16 17 H -0.28 -6.93 6.87 56.52 0.39 -6.54 16 18 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 19 H -0.27 -6.50 6.53 56.52 0.37 -6.13 16 20 C 0.05 0.96 5.00 -3.83 -0.02 0.94 16 21 C -0.10 -1.43 5.11 -26.65 -0.14 -1.57 16 22 H 0.10 0.73 8.06 -52.48 -0.42 0.30 16 23 H 0.09 0.80 7.84 -52.49 -0.41 0.39 16 24 H 0.11 1.06 6.87 -52.49 -0.36 0.70 16 25 H 0.07 0.75 7.79 -51.92 -0.40 0.35 16 26 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.37 4.17 8.10 45.56 0.37 4.54 16 28 H 0.06 0.79 6.66 -51.93 -0.35 0.44 16 29 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.09 1.84 6.70 -51.93 -0.35 1.50 16 31 H 0.03 0.60 6.19 -51.93 -0.32 0.28 16 32 H 0.04 1.00 3.27 -51.93 -0.17 0.83 16 33 H 0.03 0.60 6.81 -51.93 -0.35 0.25 16 34 H 0.05 1.24 6.46 -51.93 -0.34 0.90 16 35 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 36 H 0.06 1.14 8.02 -51.93 -0.42 0.72 16 37 H 0.03 0.66 6.49 -51.93 -0.34 0.32 16 38 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 290.73 15.07 4.38 4.38 Total: -1.00 -30.40 290.73 -6.53 -36.93 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -5.48 Total: 3.99 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: -0.60 Total: -16.41 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: -0.27 Total: -38.75 kcal Atomic # 8 Polarization: -7.84 SS G_CDS: -0.42 Total: -8.26 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.14 Total: 18.11 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.40 -6.53 -36.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717400182.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.525 kcal (2) G-P(sol) polarization free energy of solvation -30.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds