Wall clock time and date at job start Mon Mar 30 2020 03:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50697 * 120.00082 * 2 1 4 4 C 1.52998 * 109.47260 * 125.00039 * 3 2 1 5 5 O 1.42905 * 109.52069 * 300.00003 * 4 3 2 6 6 C 1.53113 * 109.52206 * 60.12629 * 4 3 2 7 7 C 1.53171 * 109.20692 * 177.56202 * 6 4 3 8 8 N 1.46847 * 109.55949 * 300.86237 * 7 6 4 9 9 C 1.46905 * 110.99963 * 185.84024 * 8 7 6 10 10 H 1.08997 * 109.46859 * 185.78814 * 9 8 7 11 11 C 1.52993 * 109.47248 * 305.78763 * 9 8 7 12 12 C 1.50700 * 109.46824 * 65.79093 * 9 8 7 13 13 H 1.07995 * 120.00649 * 359.97438 * 12 9 8 14 14 C 1.37879 * 119.99437 * 180.02562 * 12 9 8 15 15 N 1.31511 * 119.99824 * 179.97438 * 14 12 9 16 16 Si 1.86802 * 120.00058 * 359.97438 * 14 12 9 17 17 H 1.48495 * 109.47012 * 90.00666 * 16 14 12 18 18 H 1.48506 * 109.46834 * 210.00261 * 16 14 12 19 19 H 1.48502 * 109.47227 * 330.00106 * 16 14 12 20 20 C 1.46850 * 111.19713 * 61.74251 * 8 7 6 21 21 C 1.53036 * 109.52213 * 298.25889 * 20 8 7 22 22 H 1.08003 * 120.00003 * 180.02562 * 1 2 3 23 23 H 1.07999 * 120.00051 * 359.97438 * 1 2 3 24 24 H 1.07999 * 120.00051 * 180.02562 * 2 1 3 25 25 H 1.09007 * 109.47235 * 5.00330 * 3 2 1 26 26 H 1.09001 * 109.47683 * 245.00279 * 3 2 1 27 27 H 0.96696 * 114.00036 * 59.99962 * 5 4 3 28 28 H 1.09000 * 109.50568 * 297.56446 * 6 4 3 29 29 H 1.08998 * 109.50381 * 57.68886 * 6 4 3 30 30 H 1.09005 * 109.44673 * 180.83039 * 7 6 4 31 31 H 1.09000 * 109.43965 * 60.88640 * 7 6 4 32 32 H 1.08994 * 109.47405 * 179.97438 * 11 9 8 33 33 H 1.09006 * 109.47331 * 300.00402 * 11 9 8 34 34 H 1.09007 * 109.46990 * 60.00201 * 11 9 8 35 35 H 0.97004 * 120.00024 * 179.97438 * 15 14 12 36 36 H 1.09003 * 109.45918 * 178.24546 * 20 8 7 37 37 H 1.08994 * 109.45442 * 58.27123 * 20 8 7 38 38 H 1.09001 * 109.50423 * 299.24028 * 21 20 8 39 39 H 1.08994 * 109.50257 * 179.11978 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 8 2.3048 1.2053 2.4033 6 6 4.0278 0.1743 1.0553 7 6 5.0340 0.2449 2.2080 8 7 5.7436 1.5297 2.1631 9 6 6.8127 1.5761 3.1697 10 1 7.2540 2.5726 3.1852 11 6 6.2303 1.2547 4.5474 12 6 7.8728 0.5625 2.8235 13 1 7.7633 -0.0547 1.9441 14 6 8.9822 0.4225 3.6302 15 7 9.9071 -0.4623 3.3284 16 14 9.1713 1.4895 5.1517 17 1 8.5475 0.8085 6.3145 18 1 10.6142 1.7121 5.4240 19 1 8.5029 2.7963 4.9262 20 6 4.8151 2.6552 2.3293 21 6 3.8035 2.6575 1.1810 22 1 -0.5400 -0.9353 0.0004 23 1 -0.5400 0.9353 0.0004 24 1 1.8500 -0.9353 -0.0004 25 1 1.3586 2.1317 0.0896 26 1 2.6213 1.4027 -0.9314 27 1 1.7950 0.3866 2.4731 28 1 3.4894 -0.7725 1.0976 29 1 4.5571 0.2505 0.1055 30 1 5.7518 -0.5700 2.1135 31 1 4.5054 0.1548 3.1570 32 1 7.0235 1.2887 5.2942 33 1 5.4634 1.9878 4.7978 34 1 5.7889 0.2581 4.5318 35 1 10.6878 -0.5606 3.8957 36 1 5.3740 3.5910 2.3229 37 1 4.2877 2.5537 3.2777 38 1 4.3293 2.7726 0.2331 39 1 3.1050 3.4836 1.3131 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717400182.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:04 Heat of formation + Delta-G solvation = -49.205641 kcal Electronic energy + Delta-G solvation = -18196.265296 eV Core-core repulsion = 15524.336232 eV Total energy + Delta-G solvation = -2671.929064 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.86372 -38.25572 -35.09089 -34.92714 -33.36645 -31.76230 -30.78837 -27.72304 -27.17077 -24.31000 -23.79046 -21.80084 -20.49033 -20.31147 -18.60668 -17.42331 -17.16152 -16.51410 -16.13412 -15.85042 -15.34242 -15.10178 -14.94900 -14.65818 -14.15831 -14.03936 -13.78707 -13.46217 -13.05276 -12.78864 -12.69284 -12.44209 -12.37305 -12.21879 -12.06170 -11.89878 -11.79007 -11.41685 -11.09938 -11.00910 -10.77140 -10.66137 -10.07396 -8.87406 -8.27367 -6.29136 1.29024 1.34603 1.41669 1.44661 2.31937 3.06418 3.22130 3.45323 3.77311 3.87721 4.01091 4.25332 4.28741 4.35911 4.46125 4.50185 4.56319 4.61333 4.67884 4.77196 4.78888 4.87699 4.92530 5.01906 5.10179 5.11028 5.17974 5.23675 5.27920 5.37146 5.48644 5.65147 5.79620 5.90918 6.08563 6.48691 6.74116 6.77584 6.89806 7.35467 8.89502 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.046878 B = 0.006091 C = 0.005841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.156441 B = 4596.088033 C = 4792.913155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.170 4.170 3 C -0.110 4.110 4 C 0.144 3.856 5 O -0.568 6.568 6 C -0.133 4.133 7 C 0.069 3.931 8 N -0.533 5.533 9 C 0.183 3.817 10 H 0.031 0.969 11 C -0.176 4.176 12 C -0.499 4.499 13 H 0.039 0.961 14 C 0.013 3.987 15 N -0.949 5.949 16 Si 0.948 3.052 17 H -0.270 1.270 18 H -0.297 1.297 19 H -0.251 1.251 20 C 0.053 3.947 21 C -0.097 4.097 22 H 0.108 0.892 23 H 0.099 0.901 24 H 0.112 0.888 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.380 0.620 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.047 0.953 31 H 0.028 0.972 32 H 0.035 0.965 33 H 0.053 0.947 34 H 0.051 0.949 35 H 0.265 0.735 36 H 0.065 0.935 37 H 0.028 0.972 38 H 0.084 0.916 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.791 4.083 -4.314 19.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.188 4.188 3 C -0.148 4.148 4 C 0.103 3.897 5 O -0.375 6.375 6 C -0.171 4.171 7 C -0.059 4.059 8 N -0.257 5.257 9 C 0.074 3.926 10 H 0.049 0.951 11 C -0.234 4.234 12 C -0.537 4.537 13 H 0.057 0.943 14 C -0.184 4.184 15 N -0.590 5.590 16 Si 0.776 3.224 17 H -0.197 1.197 18 H -0.224 1.224 19 H -0.176 1.176 20 C -0.075 4.075 21 C -0.135 4.135 22 H 0.126 0.874 23 H 0.118 0.882 24 H 0.130 0.870 25 H 0.096 0.904 26 H 0.103 0.897 27 H 0.229 0.771 28 H 0.100 0.900 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.046 0.954 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.047 0.953 38 H 0.103 0.897 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -18.150 4.647 -4.630 19.299 hybrid contribution 0.245 -0.661 1.407 1.574 sum -17.904 3.986 -3.223 18.624 Atomic orbital electron populations 1.24026 0.95649 1.02545 0.99722 1.22996 0.96373 0.98266 1.01165 1.21356 0.98380 0.96555 0.98464 1.21110 0.89721 0.94765 0.84058 1.86507 1.65885 1.45637 1.39470 1.22304 0.96732 0.99262 0.98829 1.21840 0.94931 0.91882 0.97233 1.62027 1.11606 1.02621 1.49462 1.19560 0.89949 0.96044 0.87013 0.95088 1.22649 0.99811 1.01138 0.99820 1.21154 1.03716 1.19206 1.09621 0.94250 1.25727 0.95319 0.96434 1.00929 1.70029 1.11339 1.36965 1.40629 0.85868 0.75943 0.80598 0.80016 1.19691 1.22439 1.17565 1.22046 0.93625 0.94053 0.97749 1.21586 0.96446 0.96318 0.99112 0.87417 0.88233 0.86990 0.90360 0.89672 0.77094 0.89958 0.91071 0.93433 0.95412 0.94619 0.92783 0.93026 0.92593 0.91617 0.95334 0.89721 0.89842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.62 14.32 67.78 0.97 -1.65 16 2 C -0.17 -2.84 7.91 25.65 0.20 -2.63 16 3 C -0.11 -2.07 4.94 29.85 0.15 -1.92 16 4 C 0.14 3.53 0.73 -10.72 -0.01 3.52 16 5 O -0.57 -14.51 11.81 -148.98 -1.76 -16.27 16 6 C -0.13 -3.82 4.78 30.69 0.15 -3.67 16 7 C 0.07 2.67 4.41 86.37 0.38 3.05 16 8 N -0.53 -22.22 4.60 -875.23 -4.02 -26.25 16 9 C 0.18 8.80 1.90 44.17 0.08 8.89 16 10 H 0.03 1.54 7.05 -2.39 -0.02 1.52 16 11 C -0.18 -7.72 7.93 71.98 0.57 -7.15 16 12 C -0.50 -28.88 8.46 25.60 0.22 -28.66 16 13 H 0.04 2.55 7.36 -2.91 -0.02 2.52 16 14 C 0.01 0.76 5.45 84.66 0.46 1.22 16 15 N -0.95 -59.91 13.96 21.45 0.30 -59.61 16 16 Si 0.95 45.85 24.37 68.60 1.67 47.52 16 17 H -0.27 -12.55 6.87 99.48 0.68 -11.86 16 18 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 19 H -0.25 -11.37 6.53 99.48 0.65 -10.72 16 20 C 0.05 1.83 5.00 86.32 0.43 2.26 16 21 C -0.10 -2.60 5.11 30.65 0.16 -2.45 16 22 H 0.11 1.29 8.06 -2.91 -0.02 1.26 16 23 H 0.10 1.34 7.84 -2.91 -0.02 1.32 16 24 H 0.11 1.85 6.87 -2.91 -0.02 1.83 16 25 H 0.08 1.39 7.79 -2.38 -0.02 1.37 16 26 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.38 7.57 8.10 -74.06 -0.60 6.97 16 28 H 0.08 1.99 6.66 -2.39 -0.02 1.98 16 29 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.05 2.16 6.70 -2.38 -0.02 2.14 16 31 H 0.03 1.07 6.19 -2.39 -0.01 1.06 16 32 H 0.04 1.60 3.27 -2.39 -0.01 1.60 16 33 H 0.05 2.09 6.81 -2.38 -0.02 2.08 16 34 H 0.05 2.27 6.46 -2.38 -0.02 2.26 16 35 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 36 H 0.07 2.21 8.02 -2.39 -0.02 2.19 16 37 H 0.03 1.02 6.49 -2.39 -0.02 1.00 16 38 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -66.48 290.73 0.30 -66.18 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: 0.35 Total: 17.64 kcal Atomic # 6 Polarization: -32.97 SS G_CDS: 3.76 Total: -29.21 kcal Atomic # 7 Polarization: -82.13 SS G_CDS: -3.72 Total: -85.85 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: -1.76 Total: -16.27 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 1.67 Total: 47.52 kcal Total: -66.48 0.30 -66.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717400182.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.974 kcal (2) G-P(sol) polarization free energy of solvation -66.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds