Wall clock time and date at job start Mon Mar 30 2020 03:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.76379 * 2 1 4 4 C 1.51032 * 109.81680 * 120.76189 * 2 1 3 5 5 C 1.53362 * 111.73467 * 211.57877 * 4 2 1 6 6 N 1.48059 * 112.16447 * 318.80399 * 5 4 2 7 7 C 1.46907 * 110.99855 * 191.79302 * 6 5 4 8 8 C 1.53003 * 109.46865 * 206.97157 * 7 6 5 9 9 C 1.50703 * 115.55720 * 212.26780 * 8 7 6 10 10 H 1.08000 * 119.99343 * 219.87991 * 9 8 7 11 11 C 1.37875 * 120.00339 * 39.87909 * 9 8 7 12 12 N 1.31515 * 119.99588 * 14.10914 * 11 9 8 13 13 Si 1.86798 * 119.99868 * 194.11311 * 11 9 8 14 14 H 1.48498 * 109.47259 * 354.99825 * 13 11 9 15 15 H 1.48498 * 109.46850 * 114.99896 * 13 11 9 16 16 H 1.48501 * 109.46691 * 234.99493 * 13 11 9 17 17 C 1.53002 * 117.49958 * 66.58078 * 8 7 6 18 18 C 1.52998 * 60.03028 * 252.49644 * 17 8 7 19 19 C 1.44799 * 114.16859 * 318.16285 * 6 5 4 20 20 C 1.54435 * 109.05957 * 93.49253 * 19 6 5 21 21 O 1.36482 * 111.41414 * 284.08083 * 20 19 6 22 22 H 1.08994 * 109.47267 * 180.73985 * 1 2 3 23 23 H 1.09003 * 109.47132 * 300.74189 * 1 2 3 24 24 H 1.09001 * 109.47308 * 60.73538 * 1 2 3 25 25 H 1.09002 * 109.02768 * 332.16573 * 4 2 1 26 26 H 1.09001 * 109.02522 * 91.07403 * 4 2 1 27 27 H 1.09004 * 108.94519 * 198.11036 * 5 4 2 28 28 H 1.09001 * 108.93936 * 79.49123 * 5 4 2 29 29 H 1.08999 * 109.46797 * 86.97212 * 7 6 5 30 30 H 1.08999 * 109.47106 * 326.96826 * 7 6 5 31 31 H 0.97003 * 119.99591 * 184.98943 * 12 11 9 32 32 H 1.08996 * 117.49429 * 359.97438 * 17 8 7 33 33 H 1.08993 * 117.49990 * 144.99255 * 17 8 7 34 34 H 1.09000 * 117.50237 * 107.50319 * 18 17 8 35 35 H 1.08996 * 117.50210 * 252.52281 * 18 17 8 36 36 H 1.09007 * 109.53538 * 213.35841 * 19 6 5 37 37 H 1.09000 * 109.54413 * 333.52834 * 19 6 5 38 38 H 1.09002 * 109.09057 * 44.57429 * 20 19 6 39 39 H 1.09001 * 109.09399 * 163.58276 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8986 1.0258 0.0000 4 6 2.0420 -0.7267 1.2210 5 6 3.3763 -0.1485 1.7081 6 7 4.2885 0.1725 0.5869 7 6 5.6444 0.4560 1.0761 8 6 6.3551 1.3913 0.0958 9 6 7.8456 1.2013 -0.0198 10 1 8.4945 2.0605 -0.1038 11 6 8.3808 -0.0694 -0.0182 12 7 7.5993 -1.1122 -0.1955 13 14 10.2157 -0.3096 0.2358 14 1 10.8855 1.0147 0.2902 15 1 10.4482 -1.0347 1.5107 16 1 10.7722 -1.0999 -0.8916 17 6 5.8115 2.8148 -0.0427 18 6 5.5948 1.8011 -1.1680 19 6 4.3133 -0.8258 -0.4616 20 6 3.2969 -0.4330 -1.5560 21 8 2.0159 -0.6910 -1.1620 22 1 -0.3633 -1.0275 0.0133 23 1 -0.3633 0.5253 0.8833 24 1 -0.3634 0.5024 -0.8965 25 1 1.3052 -0.6423 2.0198 26 1 2.1806 -1.7797 0.9756 27 1 3.8598 -0.8755 2.3607 28 1 3.1813 0.7606 2.2770 29 1 6.2031 -0.4763 1.1588 30 1 5.5854 0.9323 2.0548 31 1 7.9627 -2.0086 -0.1225 32 1 4.9474 3.0848 0.5643 33 1 6.5319 3.6139 -0.2170 34 1 4.5883 1.4043 -1.3011 35 1 6.1730 1.9330 -2.0825 36 1 5.3129 -0.8759 -0.8936 37 1 4.0465 -1.7976 -0.0463 38 1 3.3966 0.6311 -1.7698 39 1 3.5120 -0.9993 -2.4622 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720460206.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:18 Heat of formation + Delta-G solvation = -20.239587 kcal Electronic energy + Delta-G solvation = -18626.195198 eV Core-core repulsion = 15955.522196 eV Total energy + Delta-G solvation = -2670.673002 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.91464 -38.72251 -36.21029 -34.53253 -34.14860 -29.98165 -29.91192 -27.67908 -25.63015 -25.07568 -22.89072 -22.20453 -21.19821 -20.39994 -18.14931 -17.52121 -17.12479 -16.86838 -16.57140 -16.00283 -15.24556 -15.07950 -14.54989 -14.15029 -14.04675 -13.81245 -13.38906 -13.29541 -13.08027 -12.80536 -12.56376 -12.38176 -12.24123 -12.03042 -11.96572 -11.88289 -11.63471 -11.22745 -11.00321 -10.92969 -10.51211 -10.26072 -9.76031 -8.89382 -8.06755 -6.14782 1.39304 1.44283 1.53874 2.43479 2.91839 2.98858 3.22312 3.75978 3.91605 4.04070 4.20813 4.33234 4.41106 4.42968 4.54891 4.64204 4.69369 4.77864 4.82659 4.85547 4.90146 4.97156 5.02396 5.08197 5.09833 5.17541 5.29448 5.38877 5.42788 5.47010 5.55289 5.62317 5.81256 5.97566 6.29711 6.54876 6.59638 6.80432 6.88665 7.44600 8.90746 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.037332 B = 0.007226 C = 0.006975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.856520 B = 3873.988636 C = 4013.583870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.093 3.907 3 H 0.059 0.941 4 C -0.137 4.137 5 C 0.056 3.944 6 N -0.546 5.546 7 C 0.100 3.900 8 C 0.028 3.972 9 C -0.510 4.510 10 H 0.046 0.954 11 C 0.031 3.969 12 N -0.888 5.888 13 Si 0.945 3.055 14 H -0.274 1.274 15 H -0.278 1.278 16 H -0.285 1.285 17 C -0.190 4.190 18 C -0.196 4.196 19 C 0.030 3.970 20 C 0.083 3.917 21 O -0.397 6.397 22 H 0.063 0.937 23 H 0.091 0.909 24 H 0.061 0.939 25 H 0.103 0.897 26 H 0.055 0.945 27 H 0.018 0.982 28 H 0.076 0.924 29 H 0.059 0.941 30 H 0.037 0.963 31 H 0.260 0.740 32 H 0.082 0.918 33 H 0.064 0.936 34 H 0.108 0.892 35 H 0.047 0.953 36 H 0.089 0.911 37 H 0.020 0.980 38 H 0.044 0.956 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.815 0.242 2.313 12.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.036 3.964 3 H 0.077 0.923 4 C -0.175 4.175 5 C -0.071 4.071 6 N -0.271 5.271 7 C -0.027 4.027 8 C 0.027 3.973 9 C -0.548 4.548 10 H 0.064 0.936 11 C -0.169 4.169 12 N -0.526 5.526 13 Si 0.771 3.229 14 H -0.198 1.198 15 H -0.204 1.204 16 H -0.211 1.211 17 C -0.227 4.227 18 C -0.233 4.233 19 C -0.099 4.099 20 C 0.005 3.995 21 O -0.316 6.316 22 H 0.082 0.918 23 H 0.109 0.891 24 H 0.080 0.920 25 H 0.121 0.879 26 H 0.074 0.926 27 H 0.036 0.964 28 H 0.094 0.906 29 H 0.077 0.923 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.100 0.900 33 H 0.083 0.917 34 H 0.126 0.874 35 H 0.066 0.934 36 H 0.107 0.893 37 H 0.038 0.962 38 H 0.062 0.938 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.081 0.310 1.961 12.243 hybrid contribution 1.968 -0.742 0.575 2.181 sum -10.113 -0.432 2.536 10.435 Atomic orbital electron populations 1.21813 0.91318 1.03030 1.03286 1.21995 0.95438 0.95239 0.83724 0.92297 1.22007 0.96279 0.99853 0.99374 1.22411 0.92971 0.99355 0.92352 1.60767 1.09801 1.44697 1.11846 1.21474 0.86769 0.99806 0.94668 1.19045 0.92049 0.91189 0.95040 1.20906 0.91395 0.92114 1.50357 0.93577 1.25502 1.01317 0.95740 0.94344 1.70004 1.36732 0.98218 1.47637 0.85722 0.81627 0.77868 0.77651 1.19831 1.20382 1.21087 1.22739 1.02034 0.93427 1.04500 1.23230 1.02114 1.05476 0.92487 1.22701 1.01892 0.91735 0.93591 1.21890 0.81853 0.99838 0.95917 1.86364 1.29098 1.68727 1.47394 0.91813 0.89071 0.91961 0.87896 0.92605 0.96376 0.90573 0.92309 0.94493 0.93092 0.89973 0.91715 0.87432 0.93425 0.89271 0.96162 0.93828 0.89096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.37 71.98 0.67 -2.07 16 2 C 0.09 2.54 2.89 29.95 0.09 2.63 16 3 H 0.06 1.77 7.61 -2.38 -0.02 1.75 16 4 C -0.14 -3.70 4.94 30.07 0.15 -3.55 16 5 C 0.06 1.84 5.31 86.20 0.46 2.29 16 6 N -0.55 -21.55 2.81 -894.80 -2.51 -24.07 16 7 C 0.10 4.65 4.70 86.30 0.41 5.05 16 8 C 0.03 1.37 1.95 -52.90 -0.10 1.26 16 9 C -0.51 -27.88 9.00 25.60 0.23 -27.64 16 10 H 0.05 2.56 7.85 -2.91 -0.02 2.54 16 11 C 0.03 1.67 5.08 84.65 0.43 2.10 16 12 N -0.89 -47.79 9.65 21.45 0.21 -47.58 16 13 Si 0.95 42.58 29.56 68.60 2.03 44.61 16 14 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 15 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 16 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 17 C -0.19 -8.37 9.94 30.59 0.30 -8.07 16 18 C -0.20 -9.00 8.78 30.62 0.27 -8.73 16 19 C 0.03 1.22 4.36 87.18 0.38 1.60 16 20 C 0.08 2.96 6.24 72.47 0.45 3.41 16 21 O -0.40 -13.06 9.70 -99.10 -0.96 -14.02 16 22 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 23 H 0.09 1.39 8.13 -2.39 -0.02 1.37 16 24 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.10 2.10 7.76 -2.39 -0.02 2.08 16 26 H 0.06 1.66 7.29 -2.39 -0.02 1.64 16 27 H 0.02 0.62 8.04 -2.38 -0.02 0.60 16 28 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.06 3.08 5.19 -2.39 -0.01 3.07 16 30 H 0.04 1.65 7.83 -2.39 -0.02 1.63 16 31 H 0.26 13.41 8.32 -92.71 -0.77 12.64 16 32 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 33 H 0.06 2.83 8.14 -2.39 -0.02 2.81 16 34 H 0.11 4.63 3.12 -2.39 -0.01 4.63 16 35 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.09 4.31 5.53 -2.38 -0.01 4.30 16 37 H 0.02 0.84 7.01 -2.39 -0.02 0.82 16 38 H 0.04 1.62 5.48 -2.39 -0.01 1.61 16 39 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 Total: -1.00 -56.62 291.73 3.51 -53.10 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: 1.02 Total: 19.68 kcal Atomic # 6 Polarization: -35.45 SS G_CDS: 3.74 Total: -31.71 kcal Atomic # 7 Polarization: -69.34 SS G_CDS: -2.31 Total: -71.65 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: -0.96 Total: -14.02 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -56.62 3.51 -53.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720460206.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.863 kcal (2) G-P(sol) polarization free energy of solvation -56.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds