Wall clock time and date at job start Mon Mar 30 2020 04:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46895 * 110.99967 * 2 1 4 4 C 1.50706 * 109.47182 * 293.94974 * 3 2 1 5 5 H 1.08005 * 119.99758 * 0.02562 * 4 3 2 6 6 C 1.37871 * 120.00102 * 180.02562 * 4 3 2 7 7 N 1.31516 * 120.00217 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99766 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47057 * 179.97438 * 8 6 4 10 10 H 1.48500 * 109.47389 * 300.00068 * 8 6 4 11 11 H 1.48504 * 109.47102 * 60.00417 * 8 6 4 12 12 C 1.46897 * 110.99642 * 123.95150 * 2 1 3 13 13 C 1.52997 * 109.47690 * 66.04975 * 12 2 1 14 14 H 1.09007 * 109.98614 * 305.12584 * 13 12 2 15 15 C 1.55769 * 110.01165 * 183.75439 * 13 12 2 16 16 C 1.52187 * 102.57427 * 245.89288 * 15 13 12 17 17 H 1.08999 * 111.87268 * 87.70166 * 16 15 13 18 18 C 1.52347 * 121.16027 * 223.05821 * 16 15 13 19 19 C 1.56068 * 102.29138 * 150.31130 * 18 16 15 20 20 C 1.54677 * 105.80948 * 333.93301 * 19 18 16 21 21 C 1.49347 * 104.88682 * 355.45153 * 20 19 18 22 22 H 1.09007 * 106.16319 * 282.82175 * 21 20 19 23 23 O 1.38835 * 130.86748 * 152.39966 * 21 20 19 24 24 H 1.09008 * 109.47172 * 60.00763 * 1 2 3 25 25 H 1.09004 * 109.47214 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47566 * 300.00424 * 1 2 3 27 27 H 1.09001 * 109.47613 * 173.95320 * 3 2 1 28 28 H 1.09006 * 109.47521 * 53.94937 * 3 2 1 29 29 H 0.97001 * 119.99646 * 359.97438 * 7 6 4 30 30 H 1.09006 * 109.46996 * 186.05216 * 12 2 1 31 31 H 1.09001 * 109.47287 * 306.04393 * 12 2 1 32 32 H 1.09002 * 110.78269 * 4.15948 * 15 13 12 33 33 H 1.09003 * 110.78896 * 127.62049 * 15 13 12 34 34 H 1.08994 * 110.84192 * 268.51390 * 18 16 15 35 35 H 1.08999 * 110.84150 * 32.11528 * 18 16 15 36 36 H 1.09003 * 110.16768 * 93.74511 * 19 18 16 37 37 H 1.08997 * 110.17762 * 215.46873 * 19 18 16 38 38 H 1.09004 * 111.10076 * 236.08479 * 20 19 18 39 39 H 1.08998 * 109.26858 * 113.88855 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0471 -1.2985 5 1 1.0740 1.5114 -2.0486 6 6 2.0277 3.3490 -1.5290 7 7 2.7137 4.0012 -0.6159 8 14 1.5840 4.1862 -3.1389 9 1 2.1160 5.5727 -3.1389 10 1 2.1758 3.4284 -4.2705 11 1 0.1068 4.2235 -3.2867 12 6 1.9953 -0.7659 1.1376 13 6 1.6315 -2.2426 0.9705 14 1 0.5544 -2.3485 0.8404 15 6 2.1008 -3.0515 2.2162 16 6 3.1761 -3.9589 1.6360 17 1 4.1556 -3.4809 1.6385 18 6 3.2616 -5.4291 2.0262 19 6 3.8696 -6.0784 0.7438 20 6 3.4683 -5.1522 -0.4282 21 6 2.5846 -4.1168 0.1862 22 1 1.6157 -4.5940 0.3343 23 8 2.3320 -2.8027 -0.1835 24 1 -0.3634 0.5137 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 3.0797 1.3445 0.1083 28 1 1.5610 1.9274 0.8309 29 1 2.9444 3.5663 0.2199 30 1 3.0797 -0.6610 1.1758 31 1 1.5610 -0.3871 2.0628 32 1 2.5210 -2.3882 2.9722 33 1 1.2799 -3.6386 2.6280 34 1 3.9238 -5.5655 2.8812 35 1 2.2709 -5.8337 2.2332 36 1 4.9541 -6.1422 0.8329 37 1 3.4467 -7.0709 0.5883 38 1 2.9299 -5.7046 -1.1983 39 1 4.3636 -4.6906 -0.8446 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720864825.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:35 Heat of formation + Delta-G solvation = -34.241857 kcal Electronic energy + Delta-G solvation = -17624.726231 eV Core-core repulsion = 14953.446046 eV Total energy + Delta-G solvation = -2671.280185 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.74047 -36.96816 -35.58417 -32.86678 -31.90802 -28.72239 -27.80394 -26.73351 -25.43638 -23.34927 -21.42360 -20.58587 -20.26311 -20.13424 -16.78504 -16.58091 -15.82311 -15.39925 -14.68423 -14.47545 -14.35746 -13.86392 -13.62182 -13.26405 -12.64206 -12.43303 -12.05580 -11.89763 -11.75583 -11.47640 -11.33453 -11.26421 -10.93606 -10.76065 -10.71293 -10.55940 -10.47106 -10.29352 -10.06298 -9.96567 -9.19497 -8.59666 -8.31839 -7.23311 -6.31330 -3.99119 3.46600 3.48552 3.51814 3.69898 4.40555 4.52788 4.57948 4.67462 4.77882 4.97250 5.04079 5.16247 5.28312 5.35247 5.37458 5.45204 5.51853 5.54590 5.67026 5.71912 5.75512 5.83789 5.91717 6.00352 6.08955 6.13029 6.19232 6.27155 6.27793 6.39704 6.71516 7.03152 7.14189 7.25977 7.85667 8.05510 8.38594 8.65506 8.93232 9.71268 11.07911 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.042983 B = 0.004829 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.265579 B = 5796.334846 C = 5990.327622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.527 5.527 3 C 0.183 3.817 4 C -0.585 4.585 5 H 0.057 0.943 6 C 0.013 3.987 7 N -0.916 5.916 8 Si 1.073 2.927 9 H -0.283 1.283 10 H -0.287 1.287 11 H -0.289 1.289 12 C 0.056 3.944 13 C 0.085 3.915 14 H 0.073 0.927 15 C -0.138 4.138 16 C -0.151 4.151 17 H 0.089 0.911 18 C -0.109 4.109 19 C -0.117 4.117 20 C -0.102 4.102 21 C 0.061 3.939 22 H 0.032 0.968 23 O -0.325 6.325 24 H 0.075 0.925 25 H 0.046 0.954 26 H 0.009 0.991 27 H 0.020 0.980 28 H -0.021 1.021 29 H 0.266 0.734 30 H 0.074 0.926 31 H 0.035 0.965 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.490 -18.889 6.000 19.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.250 5.250 3 C 0.057 3.943 4 C -0.623 4.623 5 H 0.075 0.925 6 C -0.190 4.190 7 N -0.553 5.553 8 Si 0.901 3.099 9 H -0.209 1.209 10 H -0.213 1.213 11 H -0.215 1.215 12 C -0.073 4.073 13 C 0.028 3.972 14 H 0.091 0.909 15 C -0.176 4.176 16 C -0.169 4.169 17 H 0.107 0.893 18 C -0.147 4.147 19 C -0.155 4.155 20 C -0.140 4.140 21 C 0.001 3.999 22 H 0.050 0.950 23 O -0.243 6.243 24 H 0.094 0.906 25 H 0.065 0.935 26 H 0.028 0.972 27 H 0.038 0.962 28 H -0.004 1.004 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.053 0.947 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.145 -17.575 4.516 18.147 hybrid contribution -0.503 -1.128 1.853 2.226 sum -0.648 -18.703 6.369 19.769 Atomic orbital electron populations 1.22260 0.88894 0.99149 1.00845 1.61964 1.06802 1.16812 1.39452 1.19846 0.94676 0.82848 0.96902 1.21981 1.38570 0.99611 1.02174 0.92456 1.25857 0.94484 0.94722 1.03983 1.70799 1.36738 1.39911 1.07873 0.83485 0.75998 0.75992 0.74404 1.20880 1.21346 1.21521 1.22219 1.00904 0.91281 0.92876 1.23750 0.96155 0.93825 0.83512 0.90910 1.22529 0.98628 0.98505 0.97928 1.23193 0.99817 0.95370 0.98562 0.89256 1.21974 1.01107 0.94224 0.97394 1.22622 1.00950 0.98458 0.93466 1.21114 0.99772 0.95098 0.97994 1.21826 0.97851 0.86901 0.93287 0.95045 1.88539 1.77096 1.21536 1.37142 0.90632 0.93534 0.97237 0.96243 1.00362 0.92432 0.90739 0.94675 0.90338 0.90836 0.91445 0.91362 0.91078 0.91499 0.90825 0.90912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 9.17 60.06 0.55 1.32 16 2 N -0.53 -12.23 4.74 -244.37 -1.16 -13.39 16 3 C 0.18 4.98 4.03 -4.98 -0.02 4.96 16 4 C -0.58 -17.30 8.52 -34.44 -0.29 -17.59 16 5 H 0.06 1.70 7.10 -52.48 -0.37 1.33 16 6 C 0.01 0.37 5.46 -17.82 -0.10 0.28 16 7 N -0.92 -28.66 13.65 55.43 0.76 -27.90 16 8 Si 1.07 26.06 29.90 -169.99 -5.08 20.97 16 9 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 12 C 0.06 1.06 4.48 -3.83 -0.02 1.05 16 13 C 0.08 1.36 3.26 -25.26 -0.08 1.28 16 14 H 0.07 1.14 6.29 -51.93 -0.33 0.82 16 15 C -0.14 -1.70 6.30 -25.67 -0.16 -1.86 16 16 C -0.15 -1.80 3.50 -88.98 -0.31 -2.11 16 17 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 18 C -0.11 -1.00 6.51 -25.42 -0.17 -1.17 16 19 C -0.12 -1.01 6.90 -24.21 -0.17 -1.18 16 20 C -0.10 -1.13 6.63 -27.65 -0.18 -1.31 16 21 C 0.06 0.84 3.51 -26.15 -0.09 0.75 16 22 H 0.03 0.42 7.57 -51.93 -0.39 0.03 16 23 O -0.33 -5.92 11.20 -29.37 -0.33 -6.25 16 24 H 0.07 1.68 6.86 -51.92 -0.36 1.33 16 25 H 0.05 0.83 6.21 -51.93 -0.32 0.51 16 26 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16 27 H 0.02 0.56 7.80 -51.93 -0.40 0.16 16 28 H -0.02 -0.60 7.99 -51.93 -0.41 -1.01 16 29 H 0.27 8.28 7.22 -40.82 -0.29 7.99 16 30 H 0.07 1.46 7.93 -51.93 -0.41 1.05 16 31 H 0.04 0.63 8.12 -51.93 -0.42 0.20 16 32 H 0.08 0.92 7.75 -51.93 -0.40 0.52 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 303.18 15.07 4.57 4.57 Total: -1.00 -32.63 303.18 -9.01 -41.63 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: -6.72 Total: -4.05 kcal Atomic # 6 Polarization: -14.55 SS G_CDS: -1.04 Total: -15.59 kcal Atomic # 7 Polarization: -40.89 SS G_CDS: -0.40 Total: -41.29 kcal Atomic # 8 Polarization: -5.92 SS G_CDS: -0.33 Total: -6.25 kcal Atomic # 14 Polarization: 26.06 SS G_CDS: -5.08 Total: 20.97 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.63 -9.01 -41.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720864825.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.390 kcal (2) G-P(sol) polarization free energy of solvation -32.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds