Wall clock time and date at job start Mon Mar 30 2020 04:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46895 * 110.99967 * 2 1 4 4 C 1.50706 * 109.47182 * 293.94974 * 3 2 1 5 5 H 1.08005 * 119.99758 * 0.02562 * 4 3 2 6 6 C 1.37871 * 120.00102 * 180.02562 * 4 3 2 7 7 N 1.31516 * 120.00217 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99766 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47057 * 179.97438 * 8 6 4 10 10 H 1.48500 * 109.47389 * 300.00068 * 8 6 4 11 11 H 1.48504 * 109.47102 * 60.00417 * 8 6 4 12 12 C 1.46897 * 110.99642 * 123.95150 * 2 1 3 13 13 C 1.52997 * 109.47690 * 66.04975 * 12 2 1 14 14 H 1.09007 * 109.98614 * 305.12584 * 13 12 2 15 15 C 1.55769 * 110.01165 * 183.75439 * 13 12 2 16 16 C 1.52187 * 102.57427 * 245.89288 * 15 13 12 17 17 H 1.08999 * 111.87268 * 87.70166 * 16 15 13 18 18 C 1.52347 * 121.16027 * 223.05821 * 16 15 13 19 19 C 1.56068 * 102.29138 * 150.31130 * 18 16 15 20 20 C 1.54677 * 105.80948 * 333.93301 * 19 18 16 21 21 C 1.49347 * 104.88682 * 355.45153 * 20 19 18 22 22 H 1.09007 * 106.16319 * 282.82175 * 21 20 19 23 23 O 1.38835 * 130.86748 * 152.39966 * 21 20 19 24 24 H 1.09008 * 109.47172 * 60.00763 * 1 2 3 25 25 H 1.09004 * 109.47214 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47566 * 300.00424 * 1 2 3 27 27 H 1.09001 * 109.47613 * 173.95320 * 3 2 1 28 28 H 1.09006 * 109.47521 * 53.94937 * 3 2 1 29 29 H 0.97001 * 119.99646 * 359.97438 * 7 6 4 30 30 H 1.09006 * 109.46996 * 186.05216 * 12 2 1 31 31 H 1.09001 * 109.47287 * 306.04393 * 12 2 1 32 32 H 1.09002 * 110.78269 * 4.15948 * 15 13 12 33 33 H 1.09003 * 110.78896 * 127.62049 * 15 13 12 34 34 H 1.08994 * 110.84192 * 268.51390 * 18 16 15 35 35 H 1.08999 * 110.84150 * 32.11528 * 18 16 15 36 36 H 1.09003 * 110.16768 * 93.74511 * 19 18 16 37 37 H 1.08997 * 110.17762 * 215.46873 * 19 18 16 38 38 H 1.09004 * 111.10076 * 236.08479 * 20 19 18 39 39 H 1.08998 * 109.26858 * 113.88855 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0471 -1.2985 5 1 1.0740 1.5114 -2.0486 6 6 2.0277 3.3490 -1.5290 7 7 2.7137 4.0012 -0.6159 8 14 1.5840 4.1862 -3.1389 9 1 2.1160 5.5727 -3.1389 10 1 2.1758 3.4284 -4.2705 11 1 0.1068 4.2235 -3.2867 12 6 1.9953 -0.7659 1.1376 13 6 1.6315 -2.2426 0.9705 14 1 0.5544 -2.3485 0.8404 15 6 2.1008 -3.0515 2.2162 16 6 3.1761 -3.9589 1.6360 17 1 4.1556 -3.4809 1.6385 18 6 3.2616 -5.4291 2.0262 19 6 3.8696 -6.0784 0.7438 20 6 3.4683 -5.1522 -0.4282 21 6 2.5846 -4.1168 0.1862 22 1 1.6157 -4.5940 0.3343 23 8 2.3320 -2.8027 -0.1835 24 1 -0.3634 0.5137 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 3.0797 1.3445 0.1083 28 1 1.5610 1.9274 0.8309 29 1 2.9444 3.5663 0.2199 30 1 3.0797 -0.6610 1.1758 31 1 1.5610 -0.3871 2.0628 32 1 2.5210 -2.3882 2.9722 33 1 1.2799 -3.6386 2.6280 34 1 3.9238 -5.5655 2.8812 35 1 2.2709 -5.8337 2.2332 36 1 4.9541 -6.1422 0.8329 37 1 3.4467 -7.0709 0.5883 38 1 2.9299 -5.7046 -1.1983 39 1 4.3636 -4.6906 -0.8446 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720864825.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:35 Heat of formation + Delta-G solvation = -55.976804 kcal Electronic energy + Delta-G solvation = -17625.668729 eV Core-core repulsion = 14953.446046 eV Total energy + Delta-G solvation = -2672.222684 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.81627 -38.58992 -36.80625 -34.98578 -33.13940 -30.13732 -28.72874 -28.60204 -27.01567 -25.05323 -22.99219 -21.96539 -21.37559 -21.08164 -18.91882 -17.78466 -17.26257 -16.44912 -16.09580 -15.97743 -15.72955 -15.51270 -15.11484 -14.72232 -14.01240 -13.70555 -13.41322 -13.33991 -13.24891 -13.10415 -12.68408 -12.59430 -12.46312 -12.34490 -12.14953 -11.92300 -11.70929 -11.52046 -11.41340 -11.12988 -10.80129 -10.59564 -10.32863 -9.10982 -8.70541 -6.40855 1.52240 1.61463 1.81328 2.41455 2.55036 3.10141 3.14991 3.48363 3.62964 3.78061 3.85418 4.04842 4.11250 4.28122 4.33675 4.35060 4.40645 4.46525 4.55258 4.55487 4.63718 4.73999 4.81389 4.83919 4.90247 4.96308 4.99660 5.08471 5.13607 5.15489 5.22559 5.30888 5.45851 5.74404 5.95501 6.11750 6.35685 6.39364 6.61833 7.39568 8.68140 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.042983 B = 0.004829 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.265579 B = 5796.334846 C = 5990.327622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.544 5.544 3 C 0.195 3.805 4 C -0.600 4.600 5 H 0.053 0.947 6 C -0.037 4.037 7 N -0.937 5.937 8 Si 1.123 2.877 9 H -0.281 1.281 10 H -0.272 1.272 11 H -0.267 1.267 12 C 0.056 3.944 13 C 0.086 3.914 14 H 0.079 0.921 15 C -0.129 4.129 16 C -0.146 4.146 17 H 0.073 0.927 18 C -0.103 4.103 19 C -0.111 4.111 20 C -0.105 4.105 21 C 0.042 3.958 22 H 0.039 0.961 23 O -0.367 6.367 24 H 0.055 0.945 25 H 0.079 0.921 26 H 0.014 0.986 27 H -0.006 1.006 28 H -0.040 1.040 29 H 0.252 0.748 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.083 0.917 33 H 0.100 0.900 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.291 -20.861 6.196 21.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.268 5.268 3 C 0.068 3.932 4 C -0.638 4.638 5 H 0.071 0.929 6 C -0.234 4.234 7 N -0.574 5.574 8 Si 0.943 3.057 9 H -0.206 1.206 10 H -0.198 1.198 11 H -0.192 1.192 12 C -0.072 4.072 13 C 0.029 3.971 14 H 0.097 0.903 15 C -0.167 4.167 16 C -0.164 4.164 17 H 0.092 0.908 18 C -0.140 4.140 19 C -0.148 4.148 20 C -0.143 4.143 21 C -0.017 4.017 22 H 0.057 0.943 23 O -0.286 6.286 24 H 0.074 0.926 25 H 0.098 0.902 26 H 0.033 0.967 27 H 0.012 0.988 28 H -0.022 1.022 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.101 0.899 33 H 0.118 0.882 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.100 0.900 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.952 -19.589 4.738 20.177 hybrid contribution -0.239 -0.563 1.811 1.911 sum -1.192 -20.152 6.549 21.223 Atomic orbital electron populations 1.22239 0.87305 1.01044 1.00073 1.61876 1.08376 1.14427 1.42083 1.19544 0.93088 0.85142 0.95430 1.22290 1.38483 1.00162 1.02899 0.92917 1.27477 0.93491 0.95758 1.06696 1.70931 1.38277 1.40184 1.08049 0.82869 0.77125 0.75104 0.70576 1.20602 1.19752 1.19195 1.22300 0.99821 0.93082 0.91996 1.23761 0.96362 0.91935 0.85028 0.90316 1.22505 0.99619 0.98370 0.96186 1.23191 0.98725 0.97158 0.97367 0.90831 1.21995 1.02290 0.91694 0.98047 1.22621 1.01636 0.98628 0.91928 1.21244 0.98815 0.94885 0.99335 1.22184 0.99023 0.85575 0.94939 0.94298 1.88476 1.77583 1.24021 1.38531 0.92632 0.90236 0.96707 0.98783 1.02218 0.93862 0.92414 0.93284 0.89872 0.88177 0.89940 0.90116 0.90259 0.89461 0.90023 0.92249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.71 9.17 127.69 1.17 2.88 16 2 N -0.54 -25.72 4.74 -927.04 -4.39 -30.11 16 3 C 0.19 11.00 4.03 85.56 0.34 11.34 16 4 C -0.60 -36.27 8.52 25.60 0.22 -36.05 16 5 H 0.05 3.17 7.10 -2.91 -0.02 3.15 16 6 C -0.04 -2.24 5.46 84.65 0.46 -1.77 16 7 N -0.94 -59.81 13.65 21.45 0.29 -59.52 16 8 Si 1.12 52.16 29.90 68.60 2.05 54.22 16 9 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 10 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 11 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 12 C 0.06 2.15 4.48 86.30 0.39 2.54 16 13 C 0.09 2.68 3.26 31.55 0.10 2.79 16 14 H 0.08 2.32 6.29 -2.38 -0.02 2.31 16 15 C -0.13 -2.89 6.30 31.28 0.20 -2.70 16 16 C -0.15 -3.21 3.50 -9.73 -0.03 -3.25 16 17 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 18 C -0.10 -1.54 6.51 31.44 0.20 -1.33 16 19 C -0.11 -1.59 6.90 32.23 0.22 -1.36 16 20 C -0.11 -2.19 6.63 30.00 0.20 -1.99 16 21 C 0.04 1.11 3.51 30.97 0.11 1.22 16 22 H 0.04 0.96 7.57 -2.38 -0.02 0.94 16 23 O -0.37 -13.35 11.20 -128.02 -1.43 -14.79 16 24 H 0.05 2.48 6.86 -2.38 -0.02 2.47 16 25 H 0.08 2.72 6.21 -2.38 -0.01 2.71 16 26 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 27 H -0.01 -0.35 7.80 -2.39 -0.02 -0.37 16 28 H -0.04 -2.34 7.99 -2.38 -0.02 -2.36 16 29 H 0.25 16.35 7.22 -92.71 -0.67 15.68 16 30 H 0.06 2.36 7.93 -2.38 -0.02 2.34 16 31 H 0.05 1.73 8.12 -2.39 -0.02 1.71 16 32 H 0.08 1.79 7.75 -2.39 -0.02 1.78 16 33 H 0.10 1.74 8.14 -2.39 -0.02 1.73 16 34 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 39 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -71.92 303.18 1.20 -70.72 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: 1.10 Total: 7.16 kcal Atomic # 6 Polarization: -31.27 SS G_CDS: 3.58 Total: -27.69 kcal Atomic # 7 Polarization: -85.52 SS G_CDS: -4.10 Total: -89.62 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: -1.43 Total: -14.79 kcal Atomic # 14 Polarization: 52.16 SS G_CDS: 2.05 Total: 54.22 kcal Total: -71.92 1.20 -70.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720864825.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.747 kcal (2) G-P(sol) polarization free energy of solvation -71.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds