Wall clock time and date at job start Mon Mar 30 2020 03:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50698 * 109.46977 * 2 1 4 4 C 1.36543 * 120.54843 * 95.00124 * 3 2 1 5 5 C 1.50699 * 119.92983 * 0.02562 * 4 3 2 6 6 N 1.33038 * 120.13538 * 180.02562 * 4 3 2 7 7 C 1.31834 * 121.37248 * 0.02562 * 6 4 3 8 8 S 1.76201 * 119.43325 * 179.97438 * 7 6 4 9 9 C 1.76199 * 99.99986 * 359.97438 * 8 7 6 10 10 H 1.08002 * 120.00405 * 0.02562 * 9 8 7 11 11 C 1.38862 * 119.99847 * 179.72373 * 9 8 7 12 12 N 1.31484 * 120.00110 * 0.27758 * 11 9 8 13 13 Si 1.86803 * 119.99997 * 180.27923 * 11 9 8 14 14 H 1.48496 * 109.47187 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.46906 * 120.00292 * 13 11 9 16 16 H 1.48498 * 109.47018 * 240.00031 * 13 11 9 17 17 N 1.36267 * 121.12669 * 0.25425 * 7 6 4 18 18 H 0.97002 * 120.12195 * 179.74713 * 17 7 6 19 19 C 1.35022 * 119.74971 * 359.46722 * 17 7 6 20 20 O 1.21997 * 120.64537 * 180.29419 * 19 17 7 21 21 H 1.09007 * 109.46771 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47464 * 299.99553 * 1 2 3 23 23 H 1.09001 * 109.47169 * 60.00161 * 1 2 3 24 24 H 1.09000 * 109.47083 * 239.99861 * 2 1 3 25 25 H 1.09001 * 109.47169 * 119.99839 * 2 1 3 26 26 H 1.09003 * 109.47388 * 179.97438 * 5 4 3 27 27 H 1.08999 * 109.47501 * 299.98159 * 5 4 3 28 28 H 1.09004 * 109.47264 * 59.98038 * 5 4 3 29 29 H 0.96996 * 120.00376 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3602 2.0410 1.1714 5 6 2.2211 1.3025 2.4777 6 7 2.8024 3.2957 1.1619 7 6 2.9346 3.9683 0.0358 8 16 3.5243 5.6280 0.0827 9 6 3.7538 5.8222 1.8188 10 1 3.5283 5.0052 2.4881 11 6 4.2308 7.0237 2.3259 12 7 4.5059 8.0183 1.5111 13 14 4.4816 7.2270 4.1658 14 1 4.1008 5.9703 4.8592 15 1 5.9090 7.5314 4.4401 16 1 3.6340 8.3413 4.6608 17 7 2.6176 3.4037 -1.1632 18 1 2.7170 3.9133 -1.9827 19 6 2.1700 2.1306 -1.2069 20 8 1.8865 1.6073 -2.2719 21 1 -0.3633 -1.0278 -0.0005 22 1 -0.3634 0.5137 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.5274 1.9528 3.2972 27 1 1.1818 1.0057 2.6184 28 1 2.8535 0.4149 2.4625 29 1 4.8387 8.8577 1.8653 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005155369.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:29 Heat of formation + Delta-G solvation = -26.573439 kcal Electronic energy + Delta-G solvation = -14766.738710 eV Core-core repulsion = 12201.451823 eV Total energy + Delta-G solvation = -2565.286887 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.78769 -36.93189 -35.32549 -32.99358 -32.49463 -29.95052 -27.85155 -25.95104 -24.44909 -22.03265 -21.53923 -18.73501 -17.80255 -17.20449 -16.12514 -15.33212 -15.16920 -14.53618 -13.90921 -13.64550 -13.25090 -13.17587 -12.71625 -12.31704 -12.05505 -11.87378 -11.48481 -11.31128 -11.30129 -11.23247 -10.64917 -10.41582 -9.89836 -9.57197 -9.51486 -9.23833 -9.06166 -8.17684 -7.04007 -6.73970 -4.49675 1.18196 2.23141 2.53893 3.04130 3.09338 3.18109 3.52289 3.83147 4.17864 4.68376 4.74326 5.02969 5.25583 5.34002 5.44923 5.70144 5.77918 5.87067 5.98383 6.09797 6.18208 6.22599 6.46224 6.56832 6.79887 7.04021 7.15197 7.34739 8.20112 8.50704 8.54618 8.79598 10.33604 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.035337 B = 0.007119 C = 0.006061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.178027 B = 3932.252111 C = 4618.431945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.041 4.041 3 C -0.327 4.327 4 C 0.210 3.790 5 C -0.105 4.105 6 N -0.544 5.544 7 C 0.326 3.674 8 S 0.175 5.825 9 C -0.537 4.537 10 H 0.120 0.880 11 C 0.077 3.923 12 N -0.868 5.868 13 Si 0.937 3.063 14 H -0.262 1.262 15 H -0.276 1.276 16 H -0.276 1.276 17 N -0.631 5.631 18 H 0.410 0.590 19 C 0.539 3.461 20 O -0.570 6.570 21 H 0.049 0.951 22 H 0.049 0.951 23 H 0.052 0.948 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.946 -7.447 1.318 8.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.080 4.080 3 C -0.341 4.341 4 C 0.079 3.921 5 C -0.162 4.162 6 N -0.274 5.274 7 C -0.038 4.038 8 S 0.418 5.582 9 C -0.685 4.685 10 H 0.138 0.862 11 C -0.134 4.134 12 N -0.502 5.502 13 Si 0.762 3.238 14 H -0.186 1.186 15 H -0.202 1.202 16 H -0.202 1.202 17 N -0.274 5.274 18 H 0.248 0.752 19 C 0.338 3.662 20 O -0.452 6.452 21 H 0.068 0.932 22 H 0.068 0.932 23 H 0.072 0.928 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.642 -6.410 0.668 6.966 hybrid contribution -0.163 -0.664 0.840 1.083 sum -2.805 -7.074 1.508 7.758 Atomic orbital electron populations 1.21702 0.96049 1.00560 1.01658 1.19861 0.95052 0.91447 1.01617 1.20761 1.20691 1.00583 0.92032 1.21018 0.86744 0.89476 0.94906 1.20735 1.02335 0.99465 0.93657 1.68840 1.26750 1.08567 1.23200 1.26591 0.92238 1.02591 0.82344 1.83766 1.66963 0.92830 1.14611 1.23608 1.50838 1.03786 0.90287 0.86185 1.25236 0.93160 0.94163 1.00862 1.69886 1.40130 1.04133 1.36029 0.85795 0.78218 0.78945 0.80876 1.18609 1.20199 1.20203 1.44652 1.57606 1.15234 1.09889 0.75182 1.16867 0.78145 0.80306 0.90843 1.90859 1.54303 1.67914 1.32174 0.93224 0.93234 0.92844 0.91686 0.91756 0.90404 0.90490 0.90435 0.91166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.89 37.16 0.37 -1.62 15 2 C -0.04 -0.63 5.50 -27.88 -0.15 -0.79 15 3 C -0.33 -6.07 5.16 -104.31 -0.54 -6.61 15 4 C 0.21 3.88 6.77 -82.68 -0.56 3.32 15 5 C -0.10 -1.48 8.87 36.01 0.32 -1.17 15 6 N -0.54 -11.55 8.36 -9.31 -0.08 -11.63 15 7 C 0.33 6.82 7.95 -88.13 -0.70 6.12 15 8 S 0.17 3.89 21.78 -107.50 -2.34 1.55 15 9 C -0.54 -13.39 9.25 30.96 0.29 -13.11 15 10 H 0.12 3.03 6.53 -52.49 -0.34 2.69 15 11 C 0.08 1.89 5.49 -17.47 -0.10 1.80 15 12 N -0.87 -22.26 13.22 55.49 0.73 -21.53 15 13 Si 0.94 19.29 29.55 -169.99 -5.02 14.27 15 14 H -0.26 -5.35 7.11 56.52 0.40 -4.95 15 15 H -0.28 -5.61 7.11 56.52 0.40 -5.21 15 16 H -0.28 -5.61 7.11 56.52 0.40 -5.21 15 17 N -0.63 -12.11 5.32 -14.76 -0.08 -12.19 15 18 H 0.41 6.87 8.82 -40.82 -0.36 6.51 15 19 C 0.54 11.00 7.73 -15.22 -0.12 10.88 15 20 O -0.57 -12.70 17.24 4.92 0.08 -12.61 15 21 H 0.05 0.58 8.14 -51.92 -0.42 0.15 15 22 H 0.05 0.66 8.03 -51.93 -0.42 0.24 15 23 H 0.05 0.84 8.14 -51.93 -0.42 0.42 15 24 H 0.06 1.06 7.81 -51.93 -0.41 0.65 15 25 H 0.06 0.83 6.48 -51.93 -0.34 0.50 15 26 H 0.08 1.13 8.11 -51.93 -0.42 0.71 15 27 H 0.08 0.95 8.02 -51.93 -0.42 0.53 15 28 H 0.08 0.94 7.50 -51.93 -0.39 0.55 15 29 H 0.28 6.64 8.31 -40.82 -0.34 6.30 15 LS Contribution 269.30 15.07 4.06 4.06 Total: -1.00 -28.47 269.30 -6.91 -35.38 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -3.07 Total: 3.89 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -1.19 Total: -1.17 kcal Atomic # 7 Polarization: -45.93 SS G_CDS: 0.58 Total: -45.35 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: 0.08 Total: -12.61 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.02 Total: 14.27 kcal Atomic # 16 Polarization: 3.89 SS G_CDS: -2.34 Total: 1.55 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -28.47 -6.91 -35.38 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005155369.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.805 kcal (2) G-P(sol) polarization free energy of solvation -28.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds