Wall clock time and date at job start Mon Mar 30 2020 03:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50698 * 109.46977 * 2 1 4 4 C 1.36543 * 120.54843 * 95.00124 * 3 2 1 5 5 C 1.50699 * 119.92983 * 0.02562 * 4 3 2 6 6 N 1.33038 * 120.13538 * 180.02562 * 4 3 2 7 7 C 1.31834 * 121.37248 * 0.02562 * 6 4 3 8 8 S 1.76201 * 119.43325 * 179.97438 * 7 6 4 9 9 C 1.76199 * 99.99986 * 359.97438 * 8 7 6 10 10 H 1.08002 * 120.00405 * 0.02562 * 9 8 7 11 11 C 1.38862 * 119.99847 * 179.72373 * 9 8 7 12 12 N 1.31484 * 120.00110 * 0.27758 * 11 9 8 13 13 Si 1.86803 * 119.99997 * 180.27923 * 11 9 8 14 14 H 1.48496 * 109.47187 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.46906 * 120.00292 * 13 11 9 16 16 H 1.48498 * 109.47018 * 240.00031 * 13 11 9 17 17 N 1.36267 * 121.12669 * 0.25425 * 7 6 4 18 18 H 0.97002 * 120.12195 * 179.74713 * 17 7 6 19 19 C 1.35022 * 119.74971 * 359.46722 * 17 7 6 20 20 O 1.21997 * 120.64537 * 180.29419 * 19 17 7 21 21 H 1.09007 * 109.46771 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47464 * 299.99553 * 1 2 3 23 23 H 1.09001 * 109.47169 * 60.00161 * 1 2 3 24 24 H 1.09000 * 109.47083 * 239.99861 * 2 1 3 25 25 H 1.09001 * 109.47169 * 119.99839 * 2 1 3 26 26 H 1.09003 * 109.47388 * 179.97438 * 5 4 3 27 27 H 1.08999 * 109.47501 * 299.98159 * 5 4 3 28 28 H 1.09004 * 109.47264 * 59.98038 * 5 4 3 29 29 H 0.96996 * 120.00376 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3602 2.0410 1.1714 5 6 2.2211 1.3025 2.4777 6 7 2.8024 3.2957 1.1619 7 6 2.9346 3.9683 0.0358 8 16 3.5243 5.6280 0.0827 9 6 3.7538 5.8222 1.8188 10 1 3.5283 5.0052 2.4881 11 6 4.2308 7.0237 2.3259 12 7 4.5059 8.0183 1.5111 13 14 4.4816 7.2270 4.1658 14 1 4.1008 5.9703 4.8592 15 1 5.9090 7.5314 4.4401 16 1 3.6340 8.3413 4.6608 17 7 2.6176 3.4037 -1.1632 18 1 2.7170 3.9133 -1.9827 19 6 2.1700 2.1306 -1.2069 20 8 1.8865 1.6073 -2.2719 21 1 -0.3633 -1.0278 -0.0005 22 1 -0.3634 0.5137 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.5274 1.9528 3.2972 27 1 1.1818 1.0057 2.6184 28 1 2.8535 0.4149 2.4625 29 1 4.8387 8.8577 1.8653 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005155369.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:29 Heat of formation + Delta-G solvation = -44.143104 kcal Electronic energy + Delta-G solvation = -14767.500588 eV Core-core repulsion = 12201.451823 eV Total energy + Delta-G solvation = -2566.048765 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.38570 -38.58029 -36.76156 -34.82292 -33.99193 -31.31171 -29.20764 -27.80996 -25.92943 -23.51755 -22.91260 -20.45208 -19.38931 -18.87019 -17.72243 -16.97837 -16.92324 -16.17289 -15.20494 -14.98996 -14.79747 -14.53655 -14.14086 -13.79953 -13.35687 -13.16844 -13.09976 -12.98187 -12.95315 -12.42825 -12.04817 -11.84461 -11.37654 -11.33536 -11.19323 -10.95543 -10.65885 -9.83924 -8.71744 -8.56993 -6.38183 -0.36772 0.54419 0.90799 1.42143 1.43451 1.58933 1.91583 2.17277 2.61538 2.89824 2.97607 3.52813 3.74902 4.04965 4.20056 4.54698 4.60518 4.72007 4.80088 4.84847 5.02852 5.07972 5.21285 5.38026 5.46697 5.48887 5.57724 5.60124 6.28913 6.88852 6.92480 6.96792 8.51957 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.035337 B = 0.007119 C = 0.006061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.178027 B = 3932.252111 C = 4618.431945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.042 4.042 3 C -0.322 4.322 4 C 0.197 3.803 5 C -0.101 4.101 6 N -0.561 5.561 7 C 0.331 3.669 8 S 0.151 5.849 9 C -0.557 4.557 10 H 0.112 0.888 11 C 0.034 3.966 12 N -0.901 5.901 13 Si 0.998 3.002 14 H -0.260 1.260 15 H -0.271 1.271 16 H -0.271 1.271 17 N -0.621 5.621 18 H 0.419 0.581 19 C 0.524 3.476 20 O -0.593 6.593 21 H 0.077 0.923 22 H 0.058 0.942 23 H 0.027 0.973 24 H 0.054 0.946 25 H 0.097 0.903 26 H 0.072 0.928 27 H 0.102 0.898 28 H 0.104 0.896 29 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.444 -9.142 2.843 10.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.081 4.081 3 C -0.335 4.335 4 C 0.068 3.932 5 C -0.158 4.158 6 N -0.290 5.290 7 C -0.036 4.036 8 S 0.393 5.607 9 C -0.705 4.705 10 H 0.130 0.870 11 C -0.174 4.174 12 N -0.536 5.536 13 Si 0.820 3.180 14 H -0.184 1.184 15 H -0.196 1.196 16 H -0.196 1.196 17 N -0.264 5.264 18 H 0.259 0.741 19 C 0.325 3.675 20 O -0.478 6.478 21 H 0.096 0.904 22 H 0.077 0.923 23 H 0.046 0.954 24 H 0.072 0.928 25 H 0.115 0.885 26 H 0.091 0.909 27 H 0.120 0.880 28 H 0.123 0.877 29 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.156 -8.146 2.188 9.006 hybrid contribution -0.074 -0.308 0.285 0.426 sum -3.230 -8.453 2.472 9.381 Atomic orbital electron populations 1.21665 0.94802 1.02222 1.00837 1.20009 0.96044 0.89302 1.02707 1.21204 1.19094 1.01991 0.91175 1.21667 0.85957 0.88659 0.96925 1.20884 1.04491 0.99704 0.90753 1.68859 1.26650 1.10021 1.23484 1.26377 0.92200 1.02119 0.82859 1.83657 1.69050 0.94268 1.13705 1.23748 1.51504 1.03929 0.91336 0.86985 1.26057 0.92710 0.93730 1.04858 1.69955 1.41245 1.04675 1.37719 0.84885 0.78306 0.78881 0.75929 1.18380 1.19606 1.19616 1.44611 1.56628 1.15147 1.09980 0.74136 1.17321 0.78258 0.80542 0.91407 1.90847 1.55568 1.68345 1.33049 0.90378 0.92327 0.95372 0.92756 0.88463 0.90933 0.87967 0.87741 0.90826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 9.89 71.98 0.71 -2.72 15 2 C -0.04 -1.17 5.50 29.85 0.16 -1.01 15 3 C -0.32 -11.33 5.16 -19.66 -0.10 -11.44 15 4 C 0.20 6.88 6.77 41.98 0.28 7.17 15 5 C -0.10 -2.51 8.87 71.24 0.63 -1.87 15 6 N -0.56 -23.34 8.36 -183.37 -1.53 -24.88 15 7 C 0.33 13.80 7.95 179.48 1.43 15.23 15 8 S 0.15 6.85 21.78 -56.49 -1.23 5.62 15 9 C -0.56 -28.05 9.25 67.97 0.63 -27.42 15 10 H 0.11 5.69 6.53 -2.91 -0.02 5.67 15 11 C 0.03 1.67 5.49 84.89 0.47 2.13 15 12 N -0.90 -46.70 13.22 21.65 0.29 -46.41 15 13 Si 1.00 39.20 29.55 68.60 2.03 41.23 15 14 H -0.26 -9.98 7.11 99.48 0.71 -9.27 15 15 H -0.27 -10.30 7.11 99.48 0.71 -9.59 15 16 H -0.27 -10.31 7.11 99.48 0.71 -9.60 15 17 N -0.62 -23.79 5.32 -318.58 -1.69 -25.49 15 18 H 0.42 14.19 8.82 -92.71 -0.82 13.37 15 19 C 0.52 21.04 7.73 84.80 0.66 21.69 15 20 O -0.59 -26.24 17.24 -5.30 -0.09 -26.33 15 21 H 0.08 1.51 8.14 -2.38 -0.02 1.49 15 22 H 0.06 1.35 8.03 -2.39 -0.02 1.33 15 23 H 0.03 0.83 8.14 -2.39 -0.02 0.81 15 24 H 0.05 1.64 7.81 -2.39 -0.02 1.62 15 25 H 0.10 2.07 6.48 -2.39 -0.02 2.05 15 26 H 0.07 1.90 8.11 -2.39 -0.02 1.88 15 27 H 0.10 2.04 8.02 -2.39 -0.02 2.02 15 28 H 0.10 2.05 7.50 -2.38 -0.02 2.03 15 29 H 0.28 13.56 8.31 -92.71 -0.77 12.79 15 Total: -1.00 -60.88 269.30 3.00 -57.88 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 0.36 Total: 16.61 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: 4.87 Total: 1.76 kcal Atomic # 7 Polarization: -93.83 SS G_CDS: -2.94 Total: -96.77 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -0.09 Total: -26.33 kcal Atomic # 14 Polarization: 39.20 SS G_CDS: 2.03 Total: 41.23 kcal Atomic # 16 Polarization: 6.85 SS G_CDS: -1.23 Total: 5.62 kcal Total: -60.88 3.00 -57.88 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005155369.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.739 kcal (2) G-P(sol) polarization free energy of solvation -60.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds