Wall clock time and date at job start Mon Mar 30 2020 03:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38255 * 120.00266 * 2 1 4 4 C 1.38212 * 120.00300 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99650 * 0.28729 * 4 3 2 6 6 C 1.38208 * 120.00082 * 359.50197 * 5 4 3 7 7 S 1.76205 * 120.00126 * 180.26088 * 6 5 4 8 8 O 1.42098 * 104.27409 * 26.28244 * 7 6 5 9 9 O 1.42094 * 104.27896 * 154.14098 * 7 6 5 10 10 C 1.81398 * 104.44648 * 270.21410 * 7 6 5 11 11 C 1.50698 * 109.47253 * 179.97438 * 10 7 6 12 12 H 1.08002 * 119.99828 * 0.02562 * 11 10 7 13 13 C 1.37875 * 120.00543 * 179.97438 * 11 10 7 14 14 N 1.31511 * 120.00408 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 119.99711 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.47270 * 89.99810 * 15 13 11 17 17 H 1.48501 * 109.46798 * 210.00035 * 15 13 11 18 18 H 1.48503 * 109.47159 * 329.99732 * 15 13 11 19 19 C 1.38215 * 119.99989 * 180.02562 * 2 1 3 20 20 H 1.08994 * 109.47517 * 89.99651 * 1 2 3 21 21 H 1.08997 * 109.46988 * 210.00044 * 1 2 3 22 22 H 1.09009 * 109.46840 * 329.99292 * 1 2 3 23 23 H 1.07999 * 119.99759 * 0.02562 * 3 2 1 24 24 H 1.08002 * 119.99812 * 180.02562 * 4 3 2 25 25 H 1.08004 * 119.99616 * 179.72197 * 5 4 3 26 26 H 1.09005 * 109.47311 * 299.99738 * 10 7 6 27 27 H 1.09005 * 109.47375 * 59.99975 * 10 7 6 28 28 H 0.96995 * 120.00391 * 180.02562 * 14 13 11 29 29 H 1.08001 * 119.99700 * 359.96970 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 -0.0001 -0.0049 6 6 3.5806 -1.1970 -0.0005 7 16 4.4616 -2.7230 -0.0006 8 8 5.7081 -2.4080 0.6047 9 8 3.5656 -3.6450 0.6046 10 6 4.6879 -3.1149 -1.7572 11 6 5.4390 -4.4146 -1.8892 12 1 5.7489 -4.9515 -1.0048 13 6 5.7298 -4.9190 -3.1390 14 7 6.3848 -6.0536 -3.2542 15 14 5.1933 -3.9908 -4.6688 16 1 6.2636 -3.0448 -5.0746 17 1 4.9412 -4.9550 -5.7697 18 1 3.9486 -3.2350 -4.3780 19 6 2.1981 -1.1970 -0.0005 20 1 -0.3634 0.0001 -1.0276 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5140 23 1 1.6583 2.1326 0.0004 24 1 4.1204 2.1326 0.0010 25 1 5.3517 -0.0001 -0.0091 26 1 3.7137 -3.2074 -2.2373 27 1 5.2553 -2.3175 -2.2372 28 1 6.5897 -6.4082 -4.1334 29 1 1.6580 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020223304.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:07 Heat of formation + Delta-G solvation = -80.288096 kcal Electronic energy + Delta-G solvation = -14813.830330 eV Core-core repulsion = 12213.921450 eV Total energy + Delta-G solvation = -2599.908880 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.061 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.26231 -38.01063 -36.85600 -35.34399 -33.83206 -32.23128 -31.76996 -27.88380 -25.23805 -24.08336 -22.72727 -19.74763 -19.46801 -18.24614 -17.37302 -17.04892 -16.85070 -16.02303 -15.95177 -15.17750 -14.76665 -14.66762 -14.30372 -14.16821 -13.60933 -13.21280 -13.15738 -13.06650 -12.98241 -12.96029 -12.63205 -12.28144 -12.14175 -11.86344 -11.64227 -11.18635 -10.93813 -10.26777 -9.75871 -8.45162 -6.62554 -0.72458 -0.12902 0.30355 1.34215 1.36932 1.48299 2.22147 2.28032 2.49319 2.86115 3.06422 3.32140 3.82867 3.92283 4.08848 4.32113 4.35135 4.40561 4.47692 4.63566 4.83600 4.86157 4.93370 5.15867 5.17984 5.25273 5.30755 5.46816 5.81627 5.92548 6.41832 7.05883 8.70178 Molecular weight = 240.06amu Principal moments of inertia in cm(-1) A = 0.028890 B = 0.007823 C = 0.007247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.953703 B = 3578.534598 C = 3862.640181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.112 4.112 3 C -0.067 4.067 4 C -0.134 4.134 5 C -0.052 4.052 6 C -0.657 4.657 7 S 2.499 3.501 8 O -0.986 6.986 9 O -0.987 6.987 10 C -0.458 4.458 11 C -0.560 4.560 12 H 0.041 0.959 13 C 0.027 3.973 14 N -0.932 5.932 15 Si 0.950 3.050 16 H -0.255 1.255 17 H -0.275 1.275 18 H -0.232 1.232 19 C -0.050 4.050 20 H 0.085 0.915 21 H 0.068 0.932 22 H 0.091 0.909 23 H 0.169 0.831 24 H 0.165 0.835 25 H 0.141 0.859 26 H 0.111 0.889 27 H 0.111 0.889 28 H 0.277 0.723 29 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.720 18.298 1.403 21.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.113 4.113 3 C -0.084 4.084 4 C -0.152 4.152 5 C -0.071 4.071 6 C -0.746 4.746 7 S 2.686 3.314 8 O -0.983 6.983 9 O -0.984 6.984 10 C -0.591 4.591 11 C -0.598 4.598 12 H 0.059 0.941 13 C -0.175 4.175 14 N -0.569 5.569 15 Si 0.770 3.230 16 H -0.179 1.179 17 H -0.200 1.200 18 H -0.155 1.155 19 C -0.069 4.069 20 H 0.103 0.897 21 H 0.087 0.913 22 H 0.109 0.891 23 H 0.186 0.814 24 H 0.183 0.817 25 H 0.159 0.841 26 H 0.129 0.871 27 H 0.129 0.871 28 H 0.087 0.913 29 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -11.383 17.696 2.064 21.142 hybrid contribution 0.157 -0.126 -0.978 0.999 sum -11.226 17.571 1.086 20.879 Atomic orbital electron populations 1.20897 0.88226 1.04215 1.03739 1.20461 0.98267 0.92534 1.00068 1.21813 0.94293 0.98740 0.93594 1.21684 0.95116 0.98290 1.00138 1.21233 1.00958 0.91649 0.93293 1.30377 1.06592 1.18787 1.18892 1.04932 0.73386 0.74066 0.78985 1.93417 1.44616 1.84467 1.75804 1.93414 1.65695 1.63476 1.75812 1.27979 1.07242 1.05108 1.18778 1.20381 1.39199 1.05224 0.95022 0.94072 1.26007 0.93156 0.95402 1.02944 1.70009 1.39608 1.21044 1.26196 0.85665 0.81102 0.79164 0.77080 1.17903 1.20028 1.15501 1.21079 0.91687 1.00209 0.93947 0.89680 0.91285 0.89051 0.81404 0.81720 0.84077 0.87104 0.87140 0.91339 0.84539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.68 10.01 71.24 0.71 -0.97 15 2 C -0.11 -2.47 5.88 -19.87 -0.12 -2.58 15 3 C -0.07 -1.21 9.70 22.27 0.22 -0.99 15 4 C -0.13 -2.75 10.05 22.27 0.22 -2.52 15 5 C -0.05 -1.49 9.47 22.27 0.21 -1.28 15 6 C -0.66 -22.03 5.66 22.27 0.13 -21.91 15 7 S 2.50 107.94 5.08 -56.49 -0.29 107.65 15 8 O -0.99 -47.55 17.13 -127.65 -2.19 -49.74 15 9 O -0.99 -47.82 17.13 -127.65 -2.19 -50.00 15 10 C -0.46 -20.51 4.80 71.24 0.34 -20.17 15 11 C -0.56 -32.35 9.68 25.60 0.25 -32.11 15 12 H 0.04 2.66 7.96 -2.91 -0.02 2.64 15 13 C 0.03 1.51 5.47 84.65 0.46 1.98 15 14 N -0.93 -57.09 13.96 21.45 0.30 -56.79 15 15 Si 0.95 40.85 27.47 68.60 1.88 42.73 15 16 H -0.25 -10.31 7.11 99.48 0.71 -9.60 15 17 H -0.28 -11.54 7.11 99.48 0.71 -10.83 15 18 H -0.23 -8.80 6.54 99.48 0.65 -8.15 15 19 C -0.05 -1.48 9.13 22.27 0.20 -1.28 15 20 H 0.08 1.07 8.14 -2.39 -0.02 1.05 15 21 H 0.07 1.05 8.09 -2.39 -0.02 1.03 15 22 H 0.09 0.91 8.09 -2.38 -0.02 0.89 15 23 H 0.17 1.62 8.06 -2.91 -0.02 1.60 15 24 H 0.17 2.16 8.06 -2.91 -0.02 2.14 15 25 H 0.14 3.89 7.58 -2.91 -0.02 3.87 15 26 H 0.11 4.43 7.20 -2.39 -0.02 4.41 15 27 H 0.11 4.33 7.57 -2.39 -0.02 4.31 15 28 H 0.28 15.51 8.31 -92.71 -0.77 14.74 15 29 H 0.14 3.99 7.57 -2.91 -0.02 3.97 15 Total: -1.00 -77.13 267.98 1.24 -75.89 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: 1.09 Total: 12.08 kcal Atomic # 6 Polarization: -84.45 SS G_CDS: 2.63 Total: -81.82 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: 0.30 Total: -56.79 kcal Atomic # 8 Polarization: -95.37 SS G_CDS: -4.37 Total: -99.74 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 1.88 Total: 42.73 kcal Atomic # 16 Polarization: 107.94 SS G_CDS: -0.29 Total: 107.65 kcal Total: -77.13 1.24 -75.89 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020223304.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.402 kcal (2) G-P(sol) polarization free energy of solvation -77.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds