Wall clock time and date at job start Mon Mar 30 2020 04:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.27572 * 126.41326 * 2 1 4 4 N 1.39147 * 113.16543 * 179.97438 * 3 2 1 5 5 C 1.46500 * 124.44082 * 180.02562 * 4 3 2 6 6 C 1.50696 * 109.46944 * 270.02266 * 5 4 3 7 7 H 1.07999 * 120.00202 * 359.97438 * 6 5 4 8 8 C 1.37884 * 119.99746 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99573 * 0.27650 * 8 6 5 10 10 Si 1.86800 * 119.99781 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47364 * 359.97438 * 10 8 6 12 12 H 1.48508 * 109.46883 * 120.00040 * 10 8 6 13 13 H 1.48497 * 109.46870 * 239.99850 * 10 8 6 14 14 C 1.34960 * 111.11675 * 0.26278 * 4 3 2 15 15 O 1.21308 * 127.49591 * 179.70993 * 14 4 3 16 16 C 1.51440 * 126.41720 * 179.97438 * 2 1 3 17 17 H 1.08998 * 110.60514 * 298.54899 * 16 2 1 18 18 C 1.52997 * 110.60732 * 61.36315 * 16 2 1 19 19 C 1.50703 * 109.46778 * 184.99796 * 18 16 2 20 20 O 1.20827 * 120.00096 * 0.02562 * 19 18 16 21 21 O 1.34232 * 120.00030 * 180.02562 * 19 18 16 22 22 H 1.09002 * 109.47206 * 0.02789 * 1 2 3 23 23 H 1.09011 * 109.47093 * 120.02246 * 1 2 3 24 24 H 1.08998 * 109.47346 * 240.02087 * 1 2 3 25 25 H 1.09000 * 109.46609 * 150.02448 * 5 4 3 26 26 H 1.08999 * 109.46486 * 30.02527 * 5 4 3 27 27 H 0.97001 * 120.00651 * 359.71956 * 9 8 6 28 28 H 1.08992 * 109.47516 * 305.00084 * 18 16 2 29 29 H 1.09002 * 109.47167 * 65.00186 * 18 16 2 30 30 H 0.96696 * 117.00170 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2643 1.0266 0.0000 4 7 3.6187 0.7078 0.0006 5 6 4.7021 1.6939 0.0012 6 6 5.0738 2.0327 -1.4193 7 1 4.5553 1.5604 -2.2405 8 6 6.0767 2.9450 -1.6706 9 7 6.7125 3.5153 -0.6706 10 14 6.5380 3.3644 -3.4315 11 1 5.6844 2.5870 -4.3655 12 1 6.3324 4.8166 -3.6646 13 1 7.9642 3.0227 -3.6644 14 6 3.8035 -0.6291 -0.0048 15 8 4.8580 -1.2288 -0.0107 16 6 2.4061 -1.2187 0.0005 17 1 2.2414 -1.8164 0.8970 18 6 2.1734 -2.0600 -1.2560 19 6 2.9883 -3.3249 -1.1714 20 8 3.6834 -3.5323 -0.2051 21 8 2.9420 -4.2211 -2.1697 22 1 -0.3634 1.0277 -0.0005 23 1 -0.3634 -0.5142 -0.8899 24 1 -0.3634 -0.5135 0.8901 25 1 5.5697 1.2801 0.5150 26 1 4.3715 2.5964 0.5155 27 1 6.4732 3.2973 0.2438 28 1 1.1162 -2.3134 -1.3331 29 1 2.4758 -1.4911 -2.1353 30 1 3.4822 -5.0169 -2.0706 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036667446.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:17 Heat of formation + Delta-G solvation = -108.641461 kcal Electronic energy + Delta-G solvation = -17244.070885 eV Core-core repulsion = 14232.472391 eV Total energy + Delta-G solvation = -3011.598494 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.094 amu Computer time = 3.22 seconds Orbital eigenvalues (eV) -42.55037 -40.98313 -38.54842 -37.15785 -36.30877 -34.51875 -32.83476 -30.43704 -28.39585 -27.21385 -24.99977 -22.89906 -21.54052 -20.76959 -19.43405 -18.98979 -17.96903 -17.58474 -17.18042 -16.60788 -16.20187 -15.76648 -15.54361 -15.01088 -14.59601 -14.36021 -14.01094 -13.90489 -13.63433 -13.39588 -13.12293 -13.06777 -12.65019 -12.59421 -12.50888 -12.00771 -11.77678 -11.68068 -11.20786 -10.77304 -10.63846 -9.62298 -8.84182 -6.61270 0.58619 1.22432 1.43184 1.48966 1.55359 1.65044 1.72758 2.05610 2.45611 2.76168 2.98173 3.06324 3.40282 3.81413 4.18051 4.36099 4.44448 4.51491 4.56427 4.58487 4.82245 4.97800 5.18718 5.24018 5.54426 5.58247 5.62972 5.94227 6.27830 6.72317 6.93355 6.98806 7.18389 8.51381 Molecular weight = 240.09amu Principal moments of inertia in cm(-1) A = 0.023512 B = 0.007518 C = 0.006643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.613837 B = 3723.372468 C = 4214.159064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.108 3.892 3 N -0.268 5.268 4 N -0.465 5.465 5 C 0.268 3.732 6 C -0.624 4.624 7 H 0.044 0.956 8 C -0.027 4.027 9 N -0.924 5.924 10 Si 1.128 2.872 11 H -0.274 1.274 12 H -0.265 1.265 13 H -0.276 1.276 14 C 0.470 3.530 15 O -0.538 6.538 16 C -0.120 4.120 17 H 0.156 0.844 18 C -0.078 4.078 19 C 0.473 3.527 20 O -0.535 6.535 21 O -0.510 6.510 22 H 0.084 0.916 23 H 0.125 0.875 24 H 0.119 0.881 25 H 0.006 0.994 26 H 0.025 0.975 27 H 0.256 0.744 28 H 0.186 0.814 29 H 0.102 0.898 30 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.853 -12.397 -2.685 21.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.085 4.085 3 N -0.075 5.075 4 N -0.282 5.282 5 C 0.148 3.852 6 C -0.662 4.662 7 H 0.063 0.937 8 C -0.225 4.225 9 N -0.560 5.560 10 Si 0.947 3.053 11 H -0.199 1.199 12 H -0.190 1.190 13 H -0.202 1.202 14 C 0.258 3.742 15 O -0.413 6.413 16 C -0.144 4.144 17 H 0.173 0.827 18 C -0.116 4.116 19 C 0.315 3.685 20 O -0.424 6.424 21 O -0.323 6.323 22 H 0.103 0.897 23 H 0.143 0.857 24 H 0.137 0.863 25 H 0.024 0.976 26 H 0.043 0.957 27 H 0.066 0.934 28 H 0.204 0.796 29 H 0.121 0.879 30 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -16.056 -10.407 -3.349 19.425 hybrid contribution 0.397 -1.999 1.550 2.560 sum -15.660 -12.405 -1.800 20.059 Atomic orbital electron populations 1.20730 0.79717 1.05829 1.06827 1.26298 0.99286 0.87662 0.95269 1.74627 0.88784 1.28938 1.15116 1.50037 1.03565 1.06674 1.67969 1.18924 0.82339 0.86303 0.97625 1.22465 1.23085 1.28702 0.91992 0.93742 1.27536 0.92455 0.92603 1.09936 1.70868 1.41831 1.43279 1.00045 0.82820 0.76554 0.77308 0.68576 1.19899 1.18996 1.20171 1.22169 0.92726 0.83031 0.76291 1.90711 1.33140 1.66801 1.50666 1.21640 0.90853 0.98061 1.03847 0.82651 1.21074 1.04883 0.89228 0.96464 1.23536 0.79849 0.85456 0.79626 1.90820 1.39632 1.77201 1.34775 1.84444 1.67620 1.34044 1.46232 0.89709 0.85684 0.86268 0.97596 0.95695 0.93431 0.79639 0.87945 0.71181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.78 10.46 71.24 0.75 -0.04 16 2 C 0.11 2.76 6.93 46.83 0.32 3.08 16 3 N -0.27 -10.53 12.02 -40.84 -0.49 -11.02 16 4 N -0.46 -22.92 3.52 -465.38 -1.64 -24.56 16 5 C 0.27 15.67 5.30 85.63 0.45 16.12 16 6 C -0.62 -38.32 9.39 25.60 0.24 -38.08 16 7 H 0.04 2.74 7.81 -2.91 -0.02 2.72 16 8 C -0.03 -1.60 5.46 84.66 0.46 -1.14 16 9 N -0.92 -58.63 13.65 21.45 0.29 -58.34 16 10 Si 1.13 52.24 29.90 68.60 2.05 54.29 16 11 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 12 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 13 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 14 C 0.47 21.79 7.50 87.94 0.66 22.45 16 15 O -0.54 -29.79 15.96 16.22 0.26 -29.53 16 16 C -0.12 -3.47 2.62 -11.74 -0.03 -3.51 16 17 H 0.16 3.91 7.89 -2.39 -0.02 3.90 16 18 C -0.08 -1.67 5.32 29.85 0.16 -1.51 16 19 C 0.47 12.47 8.05 71.24 0.57 13.04 16 20 O -0.54 -19.38 14.85 28.47 0.42 -18.96 16 21 O -0.51 -9.80 13.42 -51.43 -0.69 -10.49 16 22 H 0.08 1.01 8.14 -2.39 -0.02 1.00 16 23 H 0.13 0.47 8.03 -2.38 -0.02 0.45 16 24 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.01 0.39 7.90 -2.39 -0.02 0.37 16 26 H 0.03 1.48 8.01 -2.39 -0.02 1.46 16 27 H 0.26 16.48 7.22 -92.71 -0.67 15.81 16 28 H 0.19 1.51 8.01 -2.39 -0.02 1.49 16 29 H 0.10 2.47 8.12 -2.39 -0.02 2.45 16 30 H 0.43 5.04 9.10 -74.06 -0.67 4.36 16 Total: -1.00 -91.57 274.09 4.39 -87.17 By element: Atomic # 1 Polarization: 0.41 SS G_CDS: 0.60 Total: 1.01 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: 3.59 Total: 10.42 kcal Atomic # 7 Polarization: -92.08 SS G_CDS: -1.84 Total: -93.92 kcal Atomic # 8 Polarization: -58.97 SS G_CDS: -0.01 Total: -58.98 kcal Atomic # 14 Polarization: 52.24 SS G_CDS: 2.05 Total: 54.29 kcal Total: -91.57 4.39 -87.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036667446.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.469 kcal (2) G-P(sol) polarization free energy of solvation -91.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.22 seconds