Wall clock time and date at job start Mon Mar 30 2020 04:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47381 * 2 1 4 4 H 1.09000 * 109.46933 * 177.45179 * 3 2 1 5 5 C 1.50698 * 109.47182 * 57.44880 * 3 2 1 6 6 H 1.07996 * 120.00238 * 240.00308 * 5 3 2 7 7 C 1.37884 * 120.00062 * 60.00086 * 5 3 2 8 8 N 1.31516 * 119.99681 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 120.00000 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47462 * 60.00132 * 9 7 5 11 11 H 1.48506 * 109.47176 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47012 * 299.99795 * 9 7 5 13 13 S 1.80996 * 109.46938 * 297.45044 * 3 2 1 14 14 C 1.76201 * 100.00041 * 291.11476 * 13 3 2 15 15 N 1.31923 * 119.44235 * 354.79633 * 14 13 3 16 16 C 1.33047 * 121.34354 * 179.71742 * 15 14 13 17 17 C 1.36513 * 120.12958 * 0.55372 * 16 15 14 18 18 C 1.40585 * 118.91866 * 359.73539 * 17 16 15 19 19 O 1.22013 * 120.63076 * 180.02562 * 18 17 16 20 20 N 1.35021 * 118.73930 * 359.97438 * 18 17 16 21 21 H 0.96994 * 120.12323 * 180.02562 * 20 18 17 22 22 H 1.09001 * 109.46871 * 295.29396 * 1 2 3 23 23 H 1.09005 * 109.46729 * 55.29317 * 1 2 3 24 24 H 1.09001 * 109.47164 * 175.29373 * 1 2 3 25 25 H 1.09006 * 109.46809 * 119.99974 * 2 1 3 26 26 H 1.09002 * 109.47382 * 239.99525 * 2 1 3 27 27 H 0.97001 * 119.99887 * 179.97438 * 8 7 5 28 28 H 1.08003 * 119.93429 * 180.26078 * 16 15 14 29 29 H 1.07998 * 120.54137 * 179.70680 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1291 1.4428 0.0457 5 6 1.4868 2.1710 1.1976 6 1 0.8709 3.0473 1.0596 7 6 1.7669 1.7186 2.4697 8 7 2.5165 0.6512 2.6377 9 14 1.0805 2.6212 3.9541 10 1 -0.4031 2.6202 3.8916 11 1 1.5246 1.9398 5.1966 12 1 1.5751 4.0214 3.9542 13 16 1.4995 2.2735 -1.5143 14 6 2.4754 1.4115 -2.7014 15 7 3.3693 0.5325 -2.2908 16 6 4.1225 -0.1437 -3.1543 17 6 3.9887 0.0719 -4.4957 18 6 3.0426 1.0111 -4.9422 19 8 2.8967 1.2281 -6.1339 20 7 2.2979 1.6678 -4.0272 21 1 1.6390 2.3197 -4.3130 22 1 -0.3633 0.4391 0.9292 23 1 -0.3633 0.5852 -0.8449 24 1 -0.3633 -1.0242 -0.0843 25 1 1.8933 -0.5139 0.8901 26 1 1.8934 -0.5139 -0.8899 27 1 2.7139 0.3331 3.5326 28 1 4.8445 -0.8612 -2.7932 29 1 4.5999 -0.4698 -5.2023 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036679684.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:14 Heat of formation + Delta-G solvation = -24.346536 kcal Electronic energy + Delta-G solvation = -14887.850167 eV Core-core repulsion = 12322.659845 eV Total energy + Delta-G solvation = -2565.190321 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 3.43 seconds Orbital eigenvalues (eV) -42.42497 -38.68624 -36.75568 -35.34321 -33.36331 -31.95263 -29.03826 -26.46067 -25.47710 -24.98056 -22.00590 -20.28190 -19.22448 -18.82025 -17.90885 -17.12165 -16.89632 -16.33716 -15.59799 -15.49384 -15.00340 -14.65062 -14.28824 -14.23344 -13.83737 -12.86099 -12.74905 -12.51676 -12.38847 -12.14640 -11.90199 -11.77093 -11.35135 -11.15787 -10.96520 -10.86693 -10.46783 -10.00714 -8.68682 -8.13980 -6.30108 -0.52833 0.06801 0.72772 1.38116 1.48685 1.50268 1.57096 1.94165 2.44589 2.55513 3.16419 3.40619 3.63696 4.29163 4.50403 4.57957 4.71997 4.78558 4.96654 5.24858 5.33243 5.36218 5.39932 5.42608 5.64213 5.71860 5.94673 6.14132 6.64934 6.71564 6.72261 7.36230 8.89964 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.047039 B = 0.006603 C = 0.006359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.101606 B = 4239.496975 C = 4402.359460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.103 4.103 3 C 0.100 3.900 4 H 0.044 0.956 5 C -0.528 4.528 6 H 0.063 0.937 7 C 0.038 3.962 8 N -0.902 5.902 9 Si 0.956 3.044 10 H -0.269 1.269 11 H -0.285 1.285 12 H -0.272 1.272 13 S -0.019 6.019 14 C 0.368 3.632 15 N -0.556 5.556 16 C 0.180 3.820 17 C -0.320 4.320 18 C 0.520 3.480 19 O -0.591 6.591 20 N -0.609 5.609 21 H 0.425 0.575 22 H 0.043 0.957 23 H 0.054 0.946 24 H 0.044 0.956 25 H 0.074 0.926 26 H 0.042 0.958 27 H 0.266 0.734 28 H 0.199 0.801 29 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.345 -0.645 -5.902 5.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.143 4.143 3 C -0.028 4.028 4 H 0.062 0.938 5 C -0.568 4.568 6 H 0.082 0.918 7 C -0.165 4.165 8 N -0.539 5.539 9 Si 0.781 3.219 10 H -0.194 1.194 11 H -0.210 1.210 12 H -0.197 1.197 13 S 0.220 5.780 14 C -0.002 4.002 15 N -0.284 5.284 16 C 0.034 3.966 17 C -0.348 4.348 18 C 0.320 3.680 19 O -0.475 6.475 20 N -0.251 5.251 21 H 0.266 0.734 22 H 0.062 0.938 23 H 0.073 0.927 24 H 0.063 0.937 25 H 0.092 0.908 26 H 0.061 0.939 27 H 0.076 0.924 28 H 0.215 0.785 29 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -0.884 -0.028 -5.804 5.871 hybrid contribution 0.409 -0.225 0.084 0.475 sum -0.475 -0.253 -5.720 5.745 Atomic orbital electron populations 1.21661 0.96165 0.99690 1.01372 1.21521 0.95676 0.96188 1.00960 1.21062 0.98943 0.95056 0.87743 0.93839 1.20746 1.33520 1.12791 0.89768 0.91845 1.25472 0.94870 0.95457 1.00745 1.69980 1.37040 1.23556 1.23294 0.85641 0.79023 0.78777 0.78467 1.19446 1.21036 1.19722 1.85673 1.47088 1.44450 1.00756 1.25865 0.94449 0.93596 0.86253 1.69150 1.10385 1.12165 1.36675 1.23186 0.92097 0.92182 0.89101 1.22827 1.06634 1.06938 0.98430 1.17514 0.82523 0.82656 0.85301 1.90932 1.71504 1.69163 1.15945 1.44718 1.36344 1.38258 1.05743 0.73446 0.93815 0.92730 0.93726 0.90812 0.93928 0.92428 0.78453 0.81094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.06 9.41 71.98 0.68 -4.38 15 2 C -0.10 -4.41 5.28 30.60 0.16 -4.25 15 3 C 0.10 4.43 1.85 29.85 0.06 4.48 15 4 H 0.04 2.16 7.71 -2.40 -0.02 2.14 15 5 C -0.53 -25.38 7.28 25.60 0.19 -25.19 15 6 H 0.06 3.00 7.71 -2.91 -0.02 2.98 15 7 C 0.04 1.85 5.30 84.66 0.45 2.29 15 8 N -0.90 -46.47 11.34 21.45 0.24 -46.22 15 9 Si 0.96 39.36 29.54 68.60 2.03 41.38 15 10 H -0.27 -10.83 7.11 99.48 0.71 -10.12 15 11 H -0.28 -11.67 7.11 99.48 0.71 -10.96 15 12 H -0.27 -11.04 7.11 99.48 0.71 -10.33 15 13 S -0.02 -0.66 20.12 -56.49 -1.14 -1.80 15 14 C 0.37 12.17 7.66 179.48 1.38 13.54 15 15 N -0.56 -18.86 7.34 -195.32 -1.43 -20.30 15 16 C 0.18 4.88 11.19 84.11 0.94 5.83 15 17 C -0.32 -8.84 10.04 22.44 0.23 -8.62 15 18 C 0.52 17.01 7.74 84.78 0.66 17.67 15 19 O -0.59 -22.79 17.97 -5.36 -0.10 -22.89 15 20 N -0.61 -18.20 5.32 -318.65 -1.69 -19.89 15 21 H 0.43 10.84 8.82 -92.71 -0.82 10.02 15 22 H 0.04 1.82 7.32 -2.39 -0.02 1.81 15 23 H 0.05 1.94 6.86 -2.38 -0.02 1.92 15 24 H 0.04 1.53 8.14 -2.39 -0.02 1.51 15 25 H 0.07 3.59 6.14 -2.38 -0.01 3.58 15 26 H 0.04 1.71 6.28 -2.39 -0.01 1.70 15 27 H 0.27 13.19 8.31 -92.71 -0.77 12.42 15 28 H 0.20 3.91 8.06 -2.91 -0.02 3.88 15 29 H 0.17 3.90 8.06 -2.91 -0.02 3.88 15 Total: -1.00 -56.91 262.10 3.00 -53.91 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: 0.36 Total: 14.44 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: 4.73 Total: 1.37 kcal Atomic # 7 Polarization: -83.53 SS G_CDS: -2.88 Total: -86.41 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: -0.10 Total: -22.89 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 2.03 Total: 41.38 kcal Atomic # 16 Polarization: -0.66 SS G_CDS: -1.14 Total: -1.80 kcal Total: -56.91 3.00 -53.91 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036679684.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.566 kcal (2) G-P(sol) polarization free energy of solvation -56.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.43 seconds