Wall clock time and date at job start Mon Mar 30 2020 04:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46496 * 120.00306 * 2 1 4 4 C 1.50704 * 109.46857 * 269.99942 * 3 2 1 5 5 H 1.07999 * 120.00268 * 359.97438 * 4 3 2 6 6 C 1.37879 * 119.99725 * 179.97438 * 4 3 2 7 7 N 1.31509 * 119.99976 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99772 * 179.97438 * 6 4 3 9 9 H 1.48506 * 109.46621 * 60.00504 * 8 6 4 10 10 H 1.48496 * 109.47134 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47447 * 300.00428 * 8 6 4 12 12 C 1.34774 * 119.99837 * 179.97438 * 2 1 3 13 13 O 1.21802 * 120.00021 * 185.31362 * 12 2 1 14 14 C 1.41517 * 120.00270 * 5.32028 * 12 2 1 15 15 S 1.75817 * 125.48394 * 335.31905 * 14 12 2 16 16 C 1.70559 * 91.69612 * 180.20488 * 15 14 12 17 17 C 1.33516 * 111.21907 * 359.81194 * 16 15 14 18 18 C 1.37504 * 125.48482 * 155.16996 * 14 12 2 19 19 N 1.39224 * 123.51563 * 0.02562 * 18 14 12 20 20 H 1.08997 * 109.47320 * 266.92625 * 1 2 3 21 21 H 1.08999 * 109.46894 * 26.92314 * 1 2 3 22 22 H 1.08997 * 109.47164 * 146.92217 * 1 2 3 23 23 H 1.09008 * 109.47232 * 29.99630 * 3 2 1 24 24 H 1.09002 * 109.47622 * 149.99750 * 3 2 1 25 25 H 0.97003 * 119.99641 * 179.97438 * 7 6 4 26 26 H 1.08002 * 124.38888 * 179.82593 * 16 15 14 27 27 H 1.08002 * 122.46054 * 180.02562 * 17 16 15 28 28 H 0.97007 * 120.00355 * 179.72453 * 19 18 14 29 29 H 0.96999 * 120.00084 * 359.44676 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7036 -1.4209 5 1 2.0982 1.0956 -2.2418 6 6 3.1261 2.8778 -1.6728 7 7 3.5534 3.6179 -0.6732 8 14 3.4381 3.4166 -3.4340 9 1 2.1407 3.5935 -4.1347 10 1 4.1805 4.7027 -3.4341 11 1 4.2414 2.3818 -4.1334 12 6 2.1388 -1.1672 0.0005 13 8 3.3529 -1.1695 0.0982 14 6 1.4358 -2.3902 -0.1126 15 16 -0.2433 -2.6478 0.3405 16 6 -0.1691 -4.2880 -0.1213 17 6 1.0416 -4.6047 -0.5868 18 6 1.9552 -3.5675 -0.5972 19 7 3.2664 -3.7025 -1.0453 20 1 -0.3634 -0.0551 1.0261 21 1 -0.3633 0.9163 -0.4653 22 1 -0.3633 -0.8611 -0.5609 23 1 1.6085 2.0284 0.5138 24 1 3.1500 1.1384 0.5139 25 1 4.0303 4.4438 -0.8505 26 1 -0.9945 -4.9806 -0.0471 27 1 1.2888 -5.5982 -0.9307 28 1 3.5811 -4.5593 -1.3738 29 1 3.8642 -2.9387 -1.0329 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040301782.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:46 Heat of formation + Delta-G solvation = 4.110199 kcal Electronic energy + Delta-G solvation = -14989.691008 eV Core-core repulsion = 12425.734663 eV Total energy + Delta-G solvation = -2563.956345 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -39.37322 -37.60889 -34.69644 -32.76032 -32.61172 -29.46532 -27.41879 -25.80235 -24.07753 -22.71300 -20.10278 -18.78716 -17.58546 -16.48474 -16.24575 -15.73947 -14.88148 -14.73685 -14.56632 -13.94602 -13.56926 -13.11160 -12.68404 -12.36616 -12.19787 -12.02495 -11.76702 -11.17007 -10.91545 -10.58172 -10.47851 -10.21491 -10.03497 -9.61969 -8.97519 -8.41475 -8.34269 -7.66509 -7.08268 -6.00696 -4.05651 0.98812 1.90875 2.26772 2.84078 3.33706 3.37785 3.40829 3.90951 4.24729 4.29931 4.48507 5.07410 5.31224 5.35291 5.58844 5.70771 5.91634 5.93764 6.15749 6.25489 6.30598 7.14539 7.50780 7.57513 7.66601 7.96418 8.05735 8.28028 8.50920 8.94316 9.17451 9.59320 11.07040 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.034824 B = 0.007006 C = 0.006522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.852348 B = 3995.600167 C = 4292.235427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.599 5.599 3 C 0.246 3.754 4 C -0.526 4.526 5 H 0.056 0.944 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 C 0.591 3.409 13 O -0.554 6.554 14 C -0.364 4.364 15 S 0.210 5.790 16 C -0.231 4.231 17 C -0.190 4.190 18 C 0.262 3.738 19 N -0.844 5.844 20 H 0.049 0.951 21 H 0.084 0.916 22 H 0.070 0.930 23 H 0.032 0.968 24 H 0.046 0.954 25 H 0.263 0.737 26 H 0.161 0.839 27 H 0.135 0.865 28 H 0.394 0.606 29 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.755 -14.412 0.820 16.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.330 5.330 3 C 0.127 3.873 4 C -0.565 4.565 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.203 1.203 12 C 0.381 3.619 13 O -0.436 6.436 14 C -0.490 4.490 15 S 0.475 5.525 16 C -0.369 4.369 17 C -0.227 4.227 18 C 0.142 3.858 19 N -0.386 5.386 20 H 0.067 0.933 21 H 0.103 0.897 22 H 0.088 0.912 23 H 0.050 0.950 24 H 0.064 0.936 25 H 0.073 0.927 26 H 0.178 0.822 27 H 0.153 0.847 28 H 0.222 0.778 29 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -9.174 -13.289 1.536 16.221 hybrid contribution 1.482 -0.768 -1.788 2.446 sum -7.692 -14.058 -0.252 16.026 Atomic orbital electron populations 1.21904 0.82062 1.03008 1.00813 1.47971 1.05783 1.07856 1.71414 1.19284 0.92670 0.77906 0.97427 1.21421 1.36522 1.06244 0.92318 0.92539 1.24931 0.95400 0.96373 0.97366 1.69927 1.38372 1.14353 1.30744 0.86563 0.78346 0.77770 0.84747 1.20243 1.21193 1.20257 1.15538 0.86816 0.82231 0.77335 1.90698 1.13456 1.87034 1.52420 1.22742 0.99683 0.99224 1.27375 1.83296 1.07549 0.99144 1.62531 1.25364 1.01362 1.04241 1.05927 1.19483 0.93386 0.99758 1.10109 1.16972 0.86325 0.91214 0.91331 1.42311 1.09917 1.15784 1.70604 0.93276 0.89703 0.91224 0.95010 0.93581 0.92690 0.82165 0.84733 0.77836 0.74893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.18 8.98 59.85 0.54 1.72 15 2 N -0.60 -13.64 2.86 -186.42 -0.53 -14.18 15 3 C 0.25 6.67 5.19 -5.19 -0.03 6.64 15 4 C -0.53 -15.23 9.39 -34.44 -0.32 -15.56 15 5 H 0.06 1.64 7.81 -52.49 -0.41 1.23 15 6 C 0.06 1.77 5.46 -17.82 -0.10 1.68 15 7 N -0.89 -26.91 13.29 55.43 0.74 -26.17 15 8 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 15 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 15 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 15 12 C 0.59 13.48 7.37 -15.01 -0.11 13.37 15 13 O -0.55 -14.39 14.47 5.10 0.07 -14.32 15 14 C -0.36 -6.66 5.84 -38.60 -0.23 -6.88 15 15 S 0.21 2.81 18.27 -107.50 -1.96 0.85 15 16 C -0.23 -2.67 10.89 29.08 0.32 -2.35 15 17 C -0.19 -2.42 10.12 -41.24 -0.42 -2.84 15 18 C 0.26 4.22 6.83 -84.78 -0.58 3.64 15 19 N -0.84 -12.68 9.02 31.92 0.29 -12.39 15 20 H 0.05 0.74 7.88 -51.93 -0.41 0.33 15 21 H 0.08 1.46 8.05 -51.93 -0.42 1.05 15 22 H 0.07 1.09 4.61 -24.81 -0.11 0.97 15 23 H 0.03 0.86 8.07 -51.92 -0.42 0.44 15 24 H 0.05 1.40 7.35 -51.93 -0.38 1.01 15 25 H 0.26 7.48 8.31 -40.82 -0.34 7.14 15 26 H 0.16 1.33 8.06 -52.49 -0.42 0.90 15 27 H 0.13 1.34 8.06 -52.49 -0.42 0.92 15 28 H 0.39 4.34 8.92 -40.82 -0.36 3.98 15 29 H 0.42 7.36 6.78 -40.82 -0.28 7.08 15 LS Contribution 262.75 15.07 3.96 3.96 Total: -1.00 -33.70 262.75 -6.16 -39.86 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -2.77 Total: 5.90 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -0.93 Total: -0.58 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: 0.49 Total: -52.74 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: 0.07 Total: -14.32 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Atomic # 16 Polarization: 2.81 SS G_CDS: -1.96 Total: 0.85 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -33.70 -6.16 -39.86 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040301782.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.969 kcal (2) G-P(sol) polarization free energy of solvation -33.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds