Wall clock time and date at job start Mon Mar 30 2020 04:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47086 * 2 1 4 4 C 1.50702 * 109.46721 * 119.99489 * 2 1 3 5 5 H 1.08003 * 119.99607 * 120.00694 * 4 2 1 6 6 C 1.37874 * 120.00631 * 299.99996 * 4 2 1 7 7 N 1.31513 * 120.00310 * 179.97438 * 6 4 2 8 8 Si 1.86799 * 119.99591 * 0.02562 * 6 4 2 9 9 H 1.48499 * 109.47443 * 89.99555 * 8 6 4 10 10 H 1.48501 * 109.47206 * 209.99849 * 8 6 4 11 11 H 1.48504 * 109.47327 * 329.99327 * 8 6 4 12 12 S 1.81000 * 109.47647 * 239.99707 * 2 1 3 13 13 C 1.76200 * 99.99657 * 65.00022 * 12 2 1 14 14 N 1.32500 * 119.14668 * 359.73662 * 13 12 2 15 15 C 1.33103 * 120.80113 * 179.71862 * 14 13 12 16 16 N 1.38622 * 120.43444 * 180.29028 * 15 14 13 17 17 C 1.39184 * 119.12560 * 0.54067 * 15 14 13 18 18 C 1.39193 * 118.43135 * 359.73336 * 17 15 14 19 19 N 1.38622 * 120.43138 * 179.97438 * 18 17 15 20 20 N 1.32512 * 119.14072 * 179.97438 * 13 12 2 21 21 H 1.08996 * 109.46778 * 180.02562 * 1 2 3 22 22 H 1.08992 * 109.47514 * 300.00288 * 1 2 3 23 23 H 1.09001 * 109.46652 * 60.00198 * 1 2 3 24 24 H 0.97002 * 120.00002 * 180.02562 * 7 6 4 25 25 H 0.97009 * 119.99750 * 180.24397 * 16 15 14 26 26 H 0.96996 * 120.00467 * 0.25575 * 16 15 14 27 27 H 1.07999 * 120.78667 * 179.75288 * 17 15 14 28 28 H 0.97004 * 119.99588 * 180.02562 * 19 18 17 29 29 H 0.96997 * 120.00537 * 0.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 2.1371 -0.8595 3.5566 8 14 0.6247 1.2791 2.6541 9 1 -0.8029 0.8728 2.6996 10 1 0.9758 1.9953 3.9067 11 1 0.8471 2.1766 1.4920 12 16 2.1335 -0.8533 -1.4778 13 6 1.5441 0.2422 -2.7256 14 7 0.8637 1.3214 -2.3680 15 6 0.4080 2.1740 -3.2829 16 7 -0.2979 3.3040 -2.8999 17 6 0.6450 1.9134 -4.6295 18 6 1.3586 0.7670 -4.9669 19 7 1.6178 0.4669 -6.2952 20 7 1.7888 -0.0372 -3.9976 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.9024 -0.5283 4.4376 25 1 -0.6302 3.9193 -3.5723 26 1 -0.4594 3.4794 -1.9598 27 1 0.2841 2.5850 -5.3944 28 1 2.1154 -0.3340 -6.5233 29 1 1.3017 1.0576 -6.9966 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041023733.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:17 Heat of formation + Delta-G solvation = 52.706175 kcal Electronic energy + Delta-G solvation = -14798.690514 eV Core-core repulsion = 12269.134201 eV Total energy + Delta-G solvation = -2529.556314 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.074 amu Computer time = 4.30 seconds Orbital eigenvalues (eV) -40.31757 -35.90516 -34.52685 -33.98033 -31.33641 -30.64864 -29.39118 -25.16203 -24.15352 -22.69052 -21.32694 -18.40211 -18.38455 -16.69992 -16.27720 -15.79649 -15.44779 -15.09264 -14.77834 -14.35931 -14.02994 -13.70807 -13.00761 -12.33322 -12.06656 -11.85231 -11.25505 -10.92474 -10.82368 -10.35758 -10.16092 -9.69581 -9.36736 -8.98072 -8.76540 -8.66342 -8.41002 -8.24465 -6.94706 -6.15827 -4.19298 1.44572 1.94842 2.11922 3.23724 3.26167 3.36200 3.40787 3.51949 3.80670 4.25845 4.35444 5.14135 5.16938 5.24322 5.44099 5.63462 6.17206 6.41467 6.49178 6.57237 6.94436 6.99580 7.17636 7.24956 7.40839 7.46869 7.52615 8.03363 8.30661 8.65727 8.82361 9.41075 10.95752 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.035927 B = 0.007735 C = 0.006527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.161895 B = 3618.887310 C = 4288.553761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.049 3.951 3 H 0.060 0.940 4 C -0.515 4.515 5 H 0.084 0.916 6 C 0.084 3.916 7 N -0.891 5.891 8 Si 0.890 3.110 9 H -0.277 1.277 10 H -0.297 1.297 11 H -0.261 1.261 12 S 0.001 5.999 13 C 0.381 3.619 14 N -0.601 5.601 15 C 0.470 3.530 16 N -0.842 5.842 17 C -0.385 4.385 18 C 0.469 3.531 19 N -0.843 5.843 20 N -0.598 5.598 21 H 0.053 0.947 22 H 0.043 0.957 23 H 0.057 0.943 24 H 0.268 0.732 25 H 0.406 0.594 26 H 0.406 0.594 27 H 0.127 0.873 28 H 0.405 0.595 29 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.890 7.677 -16.651 18.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.080 4.080 3 H 0.078 0.922 4 C -0.555 4.555 5 H 0.102 0.898 6 C -0.120 4.120 7 N -0.528 5.528 8 Si 0.720 3.280 9 H -0.204 1.204 10 H -0.224 1.224 11 H -0.186 1.186 12 S 0.239 5.761 13 C 0.004 3.996 14 N -0.334 5.334 15 C 0.223 3.777 16 N -0.385 5.385 17 C -0.421 4.421 18 C 0.223 3.777 19 N -0.387 5.387 20 N -0.330 5.330 21 H 0.072 0.928 22 H 0.061 0.939 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.236 0.764 26 H 0.236 0.764 27 H 0.145 0.855 28 H 0.234 0.766 29 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -3.892 5.978 -15.784 17.321 hybrid contribution -1.800 2.841 -0.688 3.432 sum -5.692 8.819 -16.471 19.531 Atomic orbital electron populations 1.22398 0.96730 1.01251 1.00332 1.21347 0.95587 0.98886 0.92223 0.92193 1.20459 1.33394 1.14286 0.87332 0.89820 1.24817 0.95373 0.96680 0.95174 1.69856 1.44871 1.40087 0.97994 0.86781 0.80535 0.83583 0.77110 1.20387 1.22417 1.18617 1.85883 1.66154 1.28394 0.95640 1.24949 0.89438 0.92034 0.93189 1.68539 1.21622 1.07160 1.36030 1.18190 0.85242 0.85744 0.88480 1.42102 1.60870 1.24049 1.11518 1.20898 1.20153 1.05079 0.96016 1.18111 0.86022 0.87608 0.86003 1.42039 1.63410 1.30381 1.02838 1.68095 1.31625 1.33960 0.99356 0.92801 0.93873 0.92383 0.92228 0.76448 0.76425 0.85478 0.76595 0.76425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 8.44 37.16 0.31 -3.09 15 2 C 0.05 1.21 1.72 -27.88 -0.05 1.16 15 3 H 0.06 1.53 7.01 -51.91 -0.36 1.17 15 4 C -0.52 -14.55 9.16 -34.44 -0.32 -14.86 15 5 H 0.08 2.55 7.95 -52.48 -0.42 2.13 15 6 C 0.08 2.41 5.45 -17.82 -0.10 2.31 15 7 N -0.89 -26.88 13.96 55.43 0.77 -26.10 15 8 Si 0.89 21.79 24.37 -169.99 -4.14 17.65 15 9 H -0.28 -6.60 6.87 56.52 0.39 -6.21 15 10 H -0.30 -7.23 7.11 56.52 0.40 -6.83 15 11 H -0.26 -6.18 6.53 56.52 0.37 -5.81 15 12 S 0.00 0.01 21.62 -107.50 -2.32 -2.31 15 13 C 0.38 7.85 7.66 -90.93 -0.70 7.16 15 14 N -0.60 -11.79 6.86 -12.74 -0.09 -11.87 15 15 C 0.47 7.47 7.81 -154.77 -1.21 6.26 15 16 N -0.84 -9.79 9.06 31.18 0.28 -9.51 15 17 C -0.38 -5.38 9.88 -38.88 -0.38 -5.77 15 18 C 0.47 7.10 7.81 -154.77 -1.21 5.89 15 19 N -0.84 -8.56 9.06 31.18 0.28 -8.28 15 20 N -0.60 -11.23 10.43 -12.74 -0.13 -11.36 15 21 H 0.05 1.22 8.14 -51.93 -0.42 0.79 15 22 H 0.04 1.00 3.27 -51.93 -0.17 0.83 15 23 H 0.06 1.24 5.62 -51.93 -0.29 0.95 15 24 H 0.27 7.53 8.31 -40.82 -0.34 7.19 15 25 H 0.41 3.21 8.84 -40.82 -0.36 2.85 15 26 H 0.41 4.75 8.95 -40.82 -0.37 4.38 15 27 H 0.13 1.33 8.06 -52.49 -0.42 0.90 15 28 H 0.40 3.76 8.95 -40.82 -0.37 3.40 15 29 H 0.41 2.76 8.84 -40.82 -0.36 2.39 15 LS Contribution 257.73 15.07 3.88 3.88 Total: -1.00 -32.86 257.73 -7.83 -40.70 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -2.72 Total: 8.14 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: -3.64 Total: -0.94 kcal Atomic # 7 Polarization: -68.24 SS G_CDS: 1.12 Total: -67.12 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.14 Total: 17.65 kcal Atomic # 16 Polarization: 0.01 SS G_CDS: -2.32 Total: -2.31 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -32.86 -7.83 -40.70 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041023733.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.402 kcal (2) G-P(sol) polarization free energy of solvation -32.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.30 seconds