Wall clock time and date at job start Mon Mar 30 2020 04:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47849 * 2 1 4 4 C 1.50703 * 109.47304 * 239.99595 * 2 1 3 5 5 H 1.08001 * 120.00721 * 239.99920 * 4 2 1 6 6 C 1.37878 * 119.99617 * 60.00235 * 4 2 1 7 7 N 1.31513 * 120.00446 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99934 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.46990 * 59.99899 * 8 6 4 10 10 H 1.48503 * 109.47140 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.46989 * 299.99792 * 8 6 4 12 12 S 1.80997 * 109.47126 * 119.99938 * 2 1 3 13 13 C 1.76197 * 100.00099 * 294.99898 * 12 2 1 14 14 N 1.32507 * 119.14642 * 179.97438 * 13 12 2 15 15 C 1.33098 * 120.80337 * 179.97438 * 14 13 12 16 16 N 1.38614 * 120.43821 * 179.97438 * 15 14 13 17 17 C 1.39188 * 119.12228 * 0.25230 * 15 14 13 18 18 C 1.39187 * 118.43701 * 359.48799 * 17 15 14 19 19 N 1.38621 * 120.44012 * 180.26084 * 18 17 15 20 20 N 1.32506 * 119.14438 * 359.97438 * 13 12 2 21 21 H 1.08995 * 109.47290 * 300.00457 * 1 2 3 22 22 H 1.09005 * 109.46658 * 59.99661 * 1 2 3 23 23 H 1.09001 * 109.47116 * 180.02562 * 1 2 3 24 24 H 0.96996 * 120.00825 * 180.02562 * 7 6 4 25 25 H 0.97001 * 120.00338 * 0.02562 * 16 15 14 26 26 H 0.97005 * 119.99937 * 179.72441 * 16 15 14 27 27 H 1.08000 * 120.78476 * 179.74751 * 17 15 14 28 28 H 0.96999 * 120.00299 * 180.25571 * 19 18 17 29 29 H 0.97001 * 119.99992 * 0.25081 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6035 8 14 2.3214 -1.1205 -4.0079 9 1 1.8258 -2.5203 -4.0077 10 1 1.8260 -0.4207 -5.2205 11 1 3.8064 -1.1211 -4.0081 12 16 2.1333 -0.8532 1.4778 13 6 1.5439 0.2423 2.7257 14 7 1.7876 -0.0376 3.9977 15 6 1.3583 0.7672 4.9670 16 7 1.6170 0.4669 6.2953 17 6 0.6411 1.9114 4.6296 18 6 0.4095 2.1752 3.2827 19 7 -0.2954 3.3057 2.8996 20 7 0.8685 1.3246 2.3677 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 0.7090 1.1613 -3.4844 25 1 2.1143 -0.3341 6.5235 26 1 1.3046 1.0600 6.9964 27 1 0.2766 2.5809 5.3945 28 1 -0.4564 3.4815 1.9594 29 1 -0.6277 3.9210 3.5718 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041023736.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:23 Heat of formation + Delta-G solvation = 44.411955 kcal Electronic energy + Delta-G solvation = -14703.093477 eV Core-core repulsion = 12173.177499 eV Total energy + Delta-G solvation = -2529.915978 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.074 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.16614 -35.76002 -34.36800 -33.90052 -30.93939 -30.03275 -29.21175 -25.22709 -23.98104 -22.51512 -21.13357 -18.30155 -18.24050 -16.39367 -16.01859 -15.57222 -15.26292 -14.93595 -14.62529 -14.44796 -13.87973 -13.33301 -12.65284 -12.01925 -11.80188 -11.26260 -11.00576 -10.89320 -10.75406 -10.29089 -10.15793 -9.85158 -9.26414 -8.81510 -8.65337 -8.36288 -8.24467 -8.10555 -6.78285 -6.08122 -4.18171 1.59582 2.09969 2.29933 3.31232 3.34427 3.37375 3.51410 3.64457 4.00349 4.39601 4.41600 5.22934 5.28607 5.39808 5.56434 5.77471 6.31679 6.91181 7.06382 7.09419 7.23424 7.31006 7.54372 7.58158 7.62806 7.78296 7.99369 8.17418 8.19439 8.80061 8.82417 9.44792 10.96832 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.041489 B = 0.006605 C = 0.005832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.723629 B = 4238.492870 C = 4799.956351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.095 3.905 3 H 0.060 0.940 4 C -0.515 4.515 5 H 0.064 0.936 6 C 0.073 3.927 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.275 1.275 12 S -0.049 6.049 13 C 0.388 3.612 14 N -0.601 5.601 15 C 0.467 3.533 16 N -0.845 5.845 17 C -0.387 4.387 18 C 0.470 3.530 19 N -0.841 5.841 20 N -0.591 5.591 21 H 0.038 0.962 22 H 0.088 0.912 23 H 0.026 0.974 24 H 0.264 0.736 25 H 0.403 0.597 26 H 0.405 0.595 27 H 0.126 0.874 28 H 0.408 0.592 29 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.207 3.988 13.345 14.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.033 4.033 3 H 0.078 0.922 4 C -0.555 4.555 5 H 0.082 0.918 6 C -0.132 4.132 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.200 1.200 12 S 0.190 5.810 13 C 0.011 3.989 14 N -0.333 5.333 15 C 0.220 3.780 16 N -0.388 5.388 17 C -0.424 4.424 18 C 0.222 3.778 19 N -0.385 5.385 20 N -0.323 5.323 21 H 0.057 0.943 22 H 0.106 0.894 23 H 0.045 0.955 24 H 0.074 0.926 25 H 0.233 0.767 26 H 0.235 0.765 27 H 0.144 0.856 28 H 0.238 0.762 29 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -1.306 2.428 12.525 12.825 hybrid contribution -0.911 1.675 0.151 1.913 sum -2.217 4.103 12.676 13.507 Atomic orbital electron populations 1.22019 0.96009 0.99523 1.02070 1.21018 0.96413 0.97918 0.87945 0.92222 1.20665 1.32669 1.13178 0.89038 0.91772 1.24855 0.94723 0.94936 0.98643 1.69894 1.35787 1.22441 1.23848 0.86470 0.79305 0.79710 0.81466 1.19998 1.21129 1.19991 1.85741 1.66916 1.30183 0.98146 1.24787 0.89360 0.91920 0.92800 1.68105 1.31785 1.33993 0.99464 1.18110 0.86205 0.87711 0.85971 1.42017 1.63758 1.30186 1.02882 1.20890 1.20217 1.05218 0.96041 1.18216 0.85305 0.85824 0.88406 1.42101 1.60829 1.23935 1.11593 1.68607 1.21067 1.06838 1.35773 0.94276 0.89380 0.95475 0.92612 0.76726 0.76522 0.85632 0.76205 0.76621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 8.73 37.16 0.32 -3.12 15 2 C 0.10 2.49 2.13 -27.88 -0.06 2.43 15 3 H 0.06 1.69 7.95 -51.91 -0.41 1.28 15 4 C -0.52 -14.27 8.58 -34.44 -0.30 -14.57 15 5 H 0.06 1.76 7.71 -52.49 -0.40 1.36 15 6 C 0.07 1.99 5.30 -17.82 -0.09 1.89 15 7 N -0.88 -24.71 11.32 55.43 0.63 -24.09 15 8 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 15 9 H -0.27 -6.35 7.11 56.52 0.40 -5.95 15 10 H -0.29 -6.56 7.11 56.52 0.40 -6.16 15 11 H -0.27 -6.35 7.11 56.52 0.40 -5.95 15 12 S -0.05 -1.13 21.61 -107.50 -2.32 -3.46 15 13 C 0.39 8.53 7.65 -90.93 -0.70 7.84 15 14 N -0.60 -11.97 10.43 -12.75 -0.13 -12.11 15 15 C 0.47 7.56 7.81 -154.78 -1.21 6.35 15 16 N -0.84 -9.30 9.06 31.18 0.28 -9.02 15 17 C -0.39 -5.85 9.88 -38.88 -0.38 -6.24 15 18 C 0.47 8.09 7.81 -154.77 -1.21 6.88 15 19 N -0.84 -10.87 9.06 31.18 0.28 -10.59 15 20 N -0.59 -12.49 6.87 -12.75 -0.09 -12.57 15 21 H 0.04 0.93 5.64 -51.93 -0.29 0.64 15 22 H 0.09 2.38 6.07 -51.93 -0.32 2.06 15 23 H 0.03 0.67 8.14 -51.93 -0.42 0.24 15 24 H 0.26 7.02 8.31 -40.82 -0.34 6.68 15 25 H 0.40 4.07 8.95 -40.82 -0.37 3.71 15 26 H 0.41 3.08 8.84 -40.82 -0.36 2.72 15 27 H 0.13 1.44 8.06 -52.49 -0.42 1.02 15 28 H 0.41 5.38 8.95 -40.82 -0.37 5.02 15 29 H 0.40 3.67 8.84 -40.82 -0.36 3.31 15 LS Contribution 264.56 15.07 3.99 3.99 Total: -1.00 -31.48 264.56 -8.87 -40.35 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -2.86 Total: 9.98 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: -3.62 Total: 1.46 kcal Atomic # 7 Polarization: -69.35 SS G_CDS: 0.97 Total: -68.38 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: -1.13 SS G_CDS: -2.32 Total: -3.46 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -31.48 -8.87 -40.35 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041023736.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.759 kcal (2) G-P(sol) polarization free energy of solvation -31.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds