Wall clock time and date at job start Mon Mar 30 2020 04:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47849 * 2 1 4 4 C 1.50703 * 109.47304 * 239.99595 * 2 1 3 5 5 H 1.08001 * 120.00721 * 239.99920 * 4 2 1 6 6 C 1.37878 * 119.99617 * 60.00235 * 4 2 1 7 7 N 1.31513 * 120.00446 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99934 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.46990 * 59.99899 * 8 6 4 10 10 H 1.48503 * 109.47140 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.46989 * 299.99792 * 8 6 4 12 12 S 1.80997 * 109.47126 * 119.99938 * 2 1 3 13 13 C 1.76197 * 100.00099 * 294.99898 * 12 2 1 14 14 N 1.32507 * 119.14642 * 179.97438 * 13 12 2 15 15 C 1.33098 * 120.80337 * 179.97438 * 14 13 12 16 16 N 1.38614 * 120.43821 * 179.97438 * 15 14 13 17 17 C 1.39188 * 119.12228 * 0.25230 * 15 14 13 18 18 C 1.39187 * 118.43701 * 359.48799 * 17 15 14 19 19 N 1.38621 * 120.44012 * 180.26084 * 18 17 15 20 20 N 1.32506 * 119.14438 * 359.97438 * 13 12 2 21 21 H 1.08995 * 109.47290 * 300.00457 * 1 2 3 22 22 H 1.09005 * 109.46658 * 59.99661 * 1 2 3 23 23 H 1.09001 * 109.47116 * 180.02562 * 1 2 3 24 24 H 0.96996 * 120.00825 * 180.02562 * 7 6 4 25 25 H 0.97001 * 120.00338 * 0.02562 * 16 15 14 26 26 H 0.97005 * 119.99937 * 179.72441 * 16 15 14 27 27 H 1.08000 * 120.78476 * 179.74751 * 17 15 14 28 28 H 0.96999 * 120.00299 * 180.25571 * 19 18 17 29 29 H 0.97001 * 119.99992 * 0.25081 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6035 8 14 2.3214 -1.1205 -4.0079 9 1 1.8258 -2.5203 -4.0077 10 1 1.8260 -0.4207 -5.2205 11 1 3.8064 -1.1211 -4.0081 12 16 2.1333 -0.8532 1.4778 13 6 1.5439 0.2423 2.7257 14 7 1.7876 -0.0376 3.9977 15 6 1.3583 0.7672 4.9670 16 7 1.6170 0.4669 6.2953 17 6 0.6411 1.9114 4.6296 18 6 0.4095 2.1752 3.2827 19 7 -0.2954 3.3057 2.8996 20 7 0.8685 1.3246 2.3677 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 0.7090 1.1613 -3.4844 25 1 2.1143 -0.3341 6.5235 26 1 1.3046 1.0600 6.9964 27 1 0.2766 2.5809 5.3945 28 1 -0.4564 3.4815 1.9594 29 1 -0.6277 3.9210 3.5718 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041023736.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:21 Heat of formation + Delta-G solvation = 22.106035 kcal Electronic energy + Delta-G solvation = -14704.060735 eV Core-core repulsion = 12173.177499 eV Total energy + Delta-G solvation = -2530.883235 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.074 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -41.53446 -36.96927 -36.02758 -35.53551 -32.57725 -31.78644 -30.44774 -27.30851 -25.44762 -23.83800 -23.12155 -19.70223 -19.50636 -18.24084 -17.36097 -16.96767 -16.68994 -16.30001 -16.11636 -16.03431 -15.28748 -15.03488 -14.57113 -13.79998 -13.29550 -13.05509 -12.82622 -12.73559 -12.44406 -12.17271 -11.99187 -11.41710 -11.20397 -10.79465 -10.48819 -10.06674 -9.54000 -9.29793 -8.48949 -8.15444 -6.33916 0.17274 0.64087 0.77440 1.45533 1.47800 1.54989 1.73632 2.43606 2.54904 2.73754 3.00671 3.12705 3.94911 4.15403 4.46498 4.49365 4.80336 5.02760 5.13144 5.22579 5.45751 5.67391 5.87338 5.93282 6.10547 6.28079 6.39364 6.57677 6.68825 7.13935 7.32679 7.48566 8.89069 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.041489 B = 0.006605 C = 0.005832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.723629 B = 4238.492870 C = 4799.956351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.102 3.898 3 H 0.026 0.974 4 C -0.540 4.540 5 H 0.060 0.940 6 C 0.028 3.972 7 N -0.906 5.906 8 Si 0.968 3.032 9 H -0.269 1.269 10 H -0.278 1.278 11 H -0.270 1.270 12 S -0.064 6.064 13 C 0.372 3.628 14 N -0.618 5.618 15 C 0.453 3.547 16 N -0.819 5.819 17 C -0.369 4.369 18 C 0.449 3.551 19 N -0.823 5.823 20 N -0.623 5.623 21 H 0.048 0.952 22 H 0.067 0.933 23 H 0.021 0.979 24 H 0.267 0.733 25 H 0.411 0.589 26 H 0.425 0.575 27 H 0.170 0.830 28 H 0.407 0.593 29 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.540 4.545 14.900 15.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.027 4.027 3 H 0.044 0.956 4 C -0.580 4.580 5 H 0.078 0.922 6 C -0.174 4.174 7 N -0.544 5.544 8 Si 0.792 3.208 9 H -0.194 1.194 10 H -0.203 1.203 11 H -0.195 1.195 12 S 0.173 5.827 13 C -0.007 4.007 14 N -0.352 5.352 15 C 0.206 3.794 16 N -0.364 5.364 17 C -0.406 4.406 18 C 0.203 3.797 19 N -0.367 5.367 20 N -0.357 5.357 21 H 0.067 0.933 22 H 0.086 0.914 23 H 0.040 0.960 24 H 0.076 0.924 25 H 0.241 0.759 26 H 0.258 0.742 27 H 0.187 0.813 28 H 0.237 0.763 29 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -1.672 3.047 14.182 14.602 hybrid contribution -0.845 1.621 -0.103 1.831 sum -2.517 4.669 14.080 15.046 Atomic orbital electron populations 1.21814 0.95683 0.98837 1.01453 1.20674 0.96545 0.96227 0.89255 0.95572 1.20955 1.33256 1.13469 0.90308 0.92187 1.25680 0.94684 0.95566 1.01462 1.70006 1.36298 1.23401 1.24661 0.85464 0.78851 0.78702 0.77783 1.19399 1.20270 1.19484 1.85450 1.68289 1.31083 0.97864 1.24279 0.90966 0.92399 0.93066 1.67991 1.32591 1.35317 0.99311 1.18445 0.86246 0.87755 0.86945 1.41947 1.62555 1.30579 1.01312 1.21253 1.18310 1.04958 0.96040 1.18580 0.85817 0.86350 0.88999 1.42051 1.59513 1.22899 1.12254 1.68440 1.21977 1.07510 1.37731 0.93284 0.91442 0.95992 0.92356 0.75914 0.74158 0.81276 0.76335 0.74224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.15 8.73 71.98 0.63 -5.52 15 2 C 0.10 5.50 2.13 29.85 0.06 5.57 15 3 H 0.03 1.56 7.95 -2.39 -0.02 1.54 15 4 C -0.54 -30.70 8.58 25.60 0.22 -30.48 15 5 H 0.06 3.37 7.71 -2.91 -0.02 3.35 15 6 C 0.03 1.55 5.30 84.66 0.45 2.00 15 7 N -0.91 -51.65 11.32 21.45 0.24 -51.41 15 8 Si 0.97 43.41 29.54 68.60 2.03 45.44 15 9 H -0.27 -11.76 7.11 99.48 0.71 -11.06 15 10 H -0.28 -11.99 7.11 99.48 0.71 -11.28 15 11 H -0.27 -11.83 7.11 99.48 0.71 -11.12 15 12 S -0.06 -3.10 21.61 -56.49 -1.22 -4.33 15 13 C 0.37 16.47 7.65 180.45 1.38 17.85 15 14 N -0.62 -24.12 10.43 -194.24 -2.03 -26.14 15 15 C 0.45 13.52 7.81 133.00 1.04 14.56 15 16 N -0.82 -15.22 9.06 -55.26 -0.50 -15.73 15 17 C -0.37 -9.97 9.88 22.73 0.22 -9.74 15 18 C 0.45 14.71 7.81 133.00 1.04 15.75 15 19 N -0.82 -19.59 9.06 -55.26 -0.50 -20.09 15 20 N -0.62 -26.37 6.87 -194.24 -1.33 -27.71 15 21 H 0.05 2.40 5.64 -2.39 -0.01 2.39 15 22 H 0.07 3.76 6.07 -2.38 -0.01 3.74 15 23 H 0.02 1.10 8.14 -2.39 -0.02 1.08 15 24 H 0.27 14.33 8.31 -92.71 -0.77 13.56 15 25 H 0.41 7.05 8.95 -92.71 -0.83 6.22 15 26 H 0.42 4.60 8.84 -92.70 -0.82 3.78 15 27 H 0.17 2.98 8.06 -2.91 -0.02 2.96 15 28 H 0.41 10.29 8.95 -92.71 -0.83 9.46 15 29 H 0.42 6.37 8.84 -92.71 -0.82 5.55 15 Total: -1.00 -69.48 264.56 -0.33 -69.81 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: -2.06 Total: 20.16 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: 5.04 Total: 9.98 kcal Atomic # 7 Polarization: -136.95 SS G_CDS: -4.12 Total: -141.07 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Atomic # 16 Polarization: -3.10 SS G_CDS: -1.22 Total: -4.33 kcal Total: -69.48 -0.33 -69.81 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041023736.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.912 kcal (2) G-P(sol) polarization free energy of solvation -69.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds