Wall clock time and date at job start Mon Mar 30 2020 04:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.47495 * 2 1 4 4 C 1.50695 * 109.46953 * 119.99966 * 2 1 3 5 5 H 1.08001 * 119.99753 * 119.99610 * 4 2 1 6 6 C 1.37876 * 120.00646 * 299.99728 * 4 2 1 7 7 N 1.31523 * 119.99639 * 0.02562 * 6 4 2 8 8 Si 1.86792 * 120.00728 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47075 * 59.99527 * 8 6 4 10 10 H 1.48500 * 109.47183 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46882 * 300.00158 * 8 6 4 12 12 S 1.81001 * 109.46665 * 239.99804 * 2 1 3 13 13 C 1.76202 * 100.00090 * 65.00261 * 12 2 1 14 14 N 1.31552 * 126.44956 * 0.18665 * 13 12 2 15 15 N 1.28422 * 110.49255 * 180.28577 * 14 13 12 16 16 N 1.28899 * 110.34739 * 359.71709 * 15 14 13 17 17 N 1.35392 * 126.45538 * 179.97438 * 13 12 2 18 18 C 1.46506 * 127.38059 * 0.02562 * 17 13 12 19 19 C 1.53001 * 117.49681 * 188.32884 * 18 17 13 20 20 C 1.52999 * 59.99986 * 252.51359 * 19 18 17 21 21 H 1.09000 * 109.46940 * 299.99979 * 1 2 3 22 22 H 1.08999 * 109.47035 * 59.99530 * 1 2 3 23 23 H 1.08995 * 109.47495 * 180.02562 * 1 2 3 24 24 H 0.96991 * 120.00195 * 180.02562 * 7 6 4 25 25 H 1.08998 * 115.55053 * 334.03382 * 18 17 13 26 26 H 1.09004 * 117.49834 * 359.97438 * 19 18 17 27 27 H 1.08997 * 117.49999 * 145.01929 * 19 18 17 28 28 H 1.08998 * 117.49443 * 252.51298 * 20 19 18 29 29 H 1.08998 * 117.52032 * 107.48340 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 0.9429 0.8297 2.6035 8 14 2.3225 -1.1195 4.0079 9 1 3.8075 -1.1191 4.0077 10 1 1.8269 -0.4199 5.2204 11 1 1.8280 -2.5198 4.0081 12 16 2.1333 -0.8533 -1.4779 13 6 1.5439 0.2422 -2.7258 14 7 0.8649 1.3525 -2.5339 15 7 0.5861 1.9088 -3.6573 16 7 1.0617 1.2127 -4.6324 17 7 1.7080 0.1019 -4.0624 18 6 2.4036 -0.9795 -4.7644 19 6 2.6247 -0.8171 -6.2697 20 6 1.5903 -1.8186 -5.7520 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 0.7089 1.1613 3.4844 25 1 3.1808 -1.4873 -4.1932 26 1 2.2521 0.0941 -6.7376 27 1 3.5474 -1.2180 -6.6890 28 1 1.8326 -2.8783 -5.8308 29 1 0.5375 -1.5663 -5.8791 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048247716.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:31 Heat of formation + Delta-G solvation = 138.366780 kcal Electronic energy + Delta-G solvation = -14695.493818 eV Core-core repulsion = 12169.652026 eV Total energy + Delta-G solvation = -2525.841791 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.074 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.39400 -37.70808 -34.18302 -32.79254 -31.78244 -30.29592 -25.48422 -24.94591 -23.04540 -22.59944 -21.61838 -21.10279 -18.10240 -16.73027 -16.13204 -16.05849 -15.24570 -15.00055 -13.85592 -13.67905 -13.03046 -12.77852 -12.22159 -12.14275 -11.88514 -11.81761 -11.24031 -11.18465 -10.94485 -10.90190 -10.75748 -10.45511 -10.32038 -10.15790 -9.75301 -9.47330 -9.12598 -8.58560 -7.26744 -6.23936 -4.37487 1.25594 1.44723 2.36110 2.70426 3.16066 3.21492 3.26355 3.30612 3.40428 4.14552 4.25484 4.46964 4.58104 5.01504 5.07570 5.30958 5.35048 5.54571 5.76431 5.77797 5.83741 6.43188 6.65729 6.77438 6.98069 7.34085 7.58710 7.75270 7.98316 8.60447 8.87658 9.27543 10.80994 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.043935 B = 0.006334 C = 0.005742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.146136 B = 4419.232122 C = 4875.349962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.097 3.903 3 H 0.065 0.935 4 C -0.523 4.523 5 H 0.067 0.933 6 C 0.076 3.924 7 N -0.877 5.877 8 Si 0.908 3.092 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.274 1.274 12 S -0.025 6.025 13 C 0.239 3.761 14 N -0.326 5.326 15 N -0.041 5.041 16 N -0.110 5.110 17 N -0.352 5.352 18 C 0.070 3.930 19 C -0.160 4.160 20 C -0.169 4.169 21 H 0.097 0.903 22 H 0.034 0.966 23 H 0.034 0.966 24 H 0.269 0.731 25 H 0.155 0.845 26 H 0.112 0.888 27 H 0.114 0.886 28 H 0.115 0.885 29 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.260 -6.011 -11.974 13.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.031 4.031 3 H 0.083 0.917 4 C -0.563 4.563 5 H 0.085 0.915 6 C -0.130 4.130 7 N -0.513 5.513 8 Si 0.735 3.265 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.199 1.199 12 S 0.203 5.797 13 C -0.144 4.144 14 N -0.183 5.183 15 N -0.036 5.036 16 N -0.097 5.097 17 N -0.151 5.151 18 C -0.034 4.034 19 C -0.198 4.198 20 C -0.207 4.207 21 H 0.115 0.885 22 H 0.053 0.947 23 H 0.053 0.947 24 H 0.079 0.921 25 H 0.172 0.828 26 H 0.130 0.870 27 H 0.132 0.868 28 H 0.133 0.867 29 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 3.111 -5.688 -12.397 13.990 hybrid contribution 0.097 -0.086 0.989 0.998 sum 3.208 -5.774 -11.407 13.182 Atomic orbital electron populations 1.22074 0.95397 1.00129 1.02566 1.21261 0.96758 0.97981 0.87061 0.91672 1.20508 1.33677 1.13634 0.88520 0.91530 1.24873 0.94494 0.94870 0.98759 1.69883 1.34916 1.22035 1.24439 0.86392 0.79303 0.79629 0.81205 1.19877 1.20912 1.19886 1.85736 1.67372 1.28564 0.98056 1.28277 0.98106 0.99104 0.88896 1.75130 1.18699 1.06518 1.17916 1.77821 1.12876 1.19507 0.93430 1.82263 1.13570 0.94902 1.18968 1.50912 1.40788 1.19341 1.04055 1.22040 0.99830 0.90366 0.91204 1.23366 1.01555 1.02273 0.92559 1.23483 0.98587 0.97988 1.00672 0.88476 0.94667 0.94715 0.92134 0.82770 0.86983 0.86810 0.86655 0.87819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.43 8.79 37.16 0.33 -3.10 15 2 C 0.10 2.37 2.28 -27.88 -0.06 2.31 15 3 H 0.07 1.76 8.14 -51.92 -0.42 1.33 15 4 C -0.52 -13.47 8.58 -34.44 -0.30 -13.77 15 5 H 0.07 1.67 7.71 -52.49 -0.40 1.26 15 6 C 0.08 1.97 5.30 -17.82 -0.09 1.88 15 7 N -0.88 -23.80 11.32 55.43 0.63 -23.18 15 8 Si 0.91 20.02 29.54 -169.99 -5.02 15.00 15 9 H -0.27 -5.96 7.11 56.52 0.40 -5.56 15 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 15 11 H -0.27 -5.95 7.11 56.52 0.40 -5.55 15 12 S -0.02 -0.50 21.34 -107.50 -2.29 -2.79 15 13 C 0.24 4.79 7.83 -89.17 -0.70 4.10 15 14 N -0.33 -7.29 9.72 30.50 0.30 -6.99 15 15 N -0.04 -0.87 13.38 60.35 0.81 -0.06 15 16 N -0.11 -2.07 13.45 60.35 0.81 -1.26 15 17 N -0.35 -6.07 4.01 -54.80 -0.22 -6.29 15 18 C 0.07 0.86 6.73 -67.93 -0.46 0.40 15 19 C -0.16 -1.48 10.22 -26.73 -0.27 -1.75 15 20 C -0.17 -1.60 10.46 -26.73 -0.28 -1.88 15 21 H 0.10 2.55 6.07 -51.93 -0.32 2.24 15 22 H 0.03 0.82 5.91 -51.93 -0.31 0.52 15 23 H 0.03 0.80 8.14 -51.93 -0.42 0.37 15 24 H 0.27 6.92 8.31 -40.82 -0.34 6.59 15 25 H 0.16 1.63 8.08 -51.93 -0.42 1.21 15 26 H 0.11 1.17 7.91 -51.93 -0.41 0.76 15 27 H 0.11 0.73 8.14 -51.93 -0.42 0.31 15 28 H 0.12 0.80 8.14 -51.93 -0.42 0.37 15 29 H 0.10 1.12 8.14 -51.93 -0.42 0.70 15 LS Contribution 268.96 15.07 4.05 4.05 Total: -1.00 -28.72 268.96 -5.88 -34.60 By element: Atomic # 1 Polarization: 1.85 SS G_CDS: -3.11 Total: -1.25 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: -1.84 Total: -11.83 kcal Atomic # 7 Polarization: -40.10 SS G_CDS: 2.32 Total: -37.78 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Atomic # 16 Polarization: -0.50 SS G_CDS: -2.29 Total: -2.79 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -28.72 -5.88 -34.60 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048247716.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.969 kcal (2) G-P(sol) polarization free energy of solvation -28.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds