Wall clock time and date at job start Mon Mar 30 2020 04:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.47495 * 2 1 4 4 C 1.50695 * 109.46953 * 119.99966 * 2 1 3 5 5 H 1.08001 * 119.99753 * 119.99610 * 4 2 1 6 6 C 1.37876 * 120.00646 * 299.99728 * 4 2 1 7 7 N 1.31523 * 119.99639 * 0.02562 * 6 4 2 8 8 Si 1.86792 * 120.00728 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47075 * 59.99527 * 8 6 4 10 10 H 1.48500 * 109.47183 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46882 * 300.00158 * 8 6 4 12 12 S 1.81001 * 109.46665 * 239.99804 * 2 1 3 13 13 C 1.76202 * 100.00090 * 65.00261 * 12 2 1 14 14 N 1.31552 * 126.44956 * 0.18665 * 13 12 2 15 15 N 1.28422 * 110.49255 * 180.28577 * 14 13 12 16 16 N 1.28899 * 110.34739 * 359.71709 * 15 14 13 17 17 N 1.35392 * 126.45538 * 179.97438 * 13 12 2 18 18 C 1.46506 * 127.38059 * 0.02562 * 17 13 12 19 19 C 1.53001 * 117.49681 * 188.32884 * 18 17 13 20 20 C 1.52999 * 59.99986 * 252.51359 * 19 18 17 21 21 H 1.09000 * 109.46940 * 299.99979 * 1 2 3 22 22 H 1.08999 * 109.47035 * 59.99530 * 1 2 3 23 23 H 1.08995 * 109.47495 * 180.02562 * 1 2 3 24 24 H 0.96991 * 120.00195 * 180.02562 * 7 6 4 25 25 H 1.08998 * 115.55053 * 334.03382 * 18 17 13 26 26 H 1.09004 * 117.49834 * 359.97438 * 19 18 17 27 27 H 1.08997 * 117.49999 * 145.01929 * 19 18 17 28 28 H 1.08998 * 117.49443 * 252.51298 * 20 19 18 29 29 H 1.08998 * 117.52032 * 107.48340 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 0.9429 0.8297 2.6035 8 14 2.3225 -1.1195 4.0079 9 1 3.8075 -1.1191 4.0077 10 1 1.8269 -0.4199 5.2204 11 1 1.8280 -2.5198 4.0081 12 16 2.1333 -0.8533 -1.4779 13 6 1.5439 0.2422 -2.7258 14 7 0.8649 1.3525 -2.5339 15 7 0.5861 1.9088 -3.6573 16 7 1.0617 1.2127 -4.6324 17 7 1.7080 0.1019 -4.0624 18 6 2.4036 -0.9795 -4.7644 19 6 2.6247 -0.8171 -6.2697 20 6 1.5903 -1.8186 -5.7520 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 0.7089 1.1613 3.4844 25 1 3.1808 -1.4873 -4.1932 26 1 2.2521 0.0941 -6.7376 27 1 3.5474 -1.2180 -6.6890 28 1 1.8326 -2.8783 -5.8308 29 1 0.5375 -1.5663 -5.8791 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048247716.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:25 Heat of formation + Delta-G solvation = 121.194471 kcal Electronic energy + Delta-G solvation = -14696.238465 eV Core-core repulsion = 12169.652026 eV Total energy + Delta-G solvation = -2526.586438 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.074 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.92894 -38.66893 -36.12600 -34.14290 -33.40538 -32.22496 -27.42778 -26.35247 -24.47010 -23.52563 -23.34044 -22.48766 -19.48778 -18.31875 -17.83581 -17.58934 -16.83634 -16.15531 -15.63394 -14.96055 -14.54453 -14.40509 -14.00111 -13.60820 -13.16936 -13.06788 -12.94237 -12.68238 -12.57101 -12.50671 -12.28046 -12.03505 -11.85951 -11.65410 -11.33138 -11.05603 -10.88500 -10.54610 -8.86575 -8.20246 -6.41584 -0.23048 -0.10477 1.04608 1.08815 1.36900 1.48371 1.49332 1.58257 2.41216 2.54096 3.09042 3.12705 3.53531 3.71497 3.78343 4.12859 4.29685 4.54990 4.64133 4.65988 4.83344 4.91081 5.00412 5.08654 5.21462 5.34628 5.58770 5.77342 5.99648 6.62756 7.27785 7.30991 8.84721 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.043935 B = 0.006334 C = 0.005742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.146136 B = 4419.232122 C = 4875.349962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.084 3.916 3 H 0.029 0.971 4 C -0.537 4.537 5 H 0.073 0.927 6 C 0.028 3.972 7 N -0.909 5.909 8 Si 0.972 3.028 9 H -0.266 1.266 10 H -0.284 1.284 11 H -0.265 1.265 12 S 0.034 5.966 13 C 0.218 3.782 14 N -0.359 5.359 15 N -0.066 5.066 16 N -0.101 5.101 17 N -0.332 5.332 18 C 0.023 3.977 19 C -0.139 4.139 20 C -0.152 4.152 21 H 0.071 0.929 22 H 0.034 0.966 23 H 0.040 0.960 24 H 0.269 0.731 25 H 0.174 0.826 26 H 0.098 0.902 27 H 0.151 0.849 28 H 0.150 0.850 29 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.546 -8.230 -13.171 16.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.045 4.045 3 H 0.047 0.953 4 C -0.577 4.577 5 H 0.092 0.908 6 C -0.175 4.175 7 N -0.546 5.546 8 Si 0.796 3.204 9 H -0.191 1.191 10 H -0.209 1.209 11 H -0.189 1.189 12 S 0.262 5.738 13 C -0.165 4.165 14 N -0.216 5.216 15 N -0.061 5.061 16 N -0.088 5.088 17 N -0.131 5.131 18 C -0.079 4.079 19 C -0.177 4.177 20 C -0.190 4.190 21 H 0.090 0.910 22 H 0.053 0.947 23 H 0.059 0.941 24 H 0.078 0.922 25 H 0.191 0.809 26 H 0.117 0.883 27 H 0.169 0.831 28 H 0.168 0.832 29 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.407 -7.926 -13.631 16.372 hybrid contribution -0.267 0.576 1.158 1.321 sum 4.140 -7.350 -12.473 15.057 Atomic orbital electron populations 1.21885 0.95603 0.99961 1.01292 1.20979 0.96745 0.96859 0.89919 0.95286 1.20827 1.33727 1.13829 0.89336 0.90849 1.25752 0.94505 0.95425 1.01822 1.70026 1.36044 1.23473 1.25026 0.85387 0.78953 0.78692 0.77356 1.19114 1.20914 1.18933 1.85189 1.66952 1.26752 0.94943 1.28229 0.98898 0.99147 0.90203 1.75022 1.19806 1.07783 1.19030 1.77798 1.14356 1.20495 0.93473 1.82139 1.12920 0.95064 1.18670 1.51223 1.39308 1.19338 1.03238 1.22823 1.01599 0.90517 0.92960 1.23532 1.02961 1.01707 0.89471 1.23629 0.97749 0.99754 0.97882 0.91044 0.94697 0.94099 0.92189 0.80941 0.88323 0.83117 0.83200 0.89308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.32 8.79 71.98 0.63 -5.69 15 2 C 0.08 4.16 2.28 29.85 0.07 4.22 15 3 H 0.03 1.63 8.14 -2.40 -0.02 1.61 15 4 C -0.54 -27.70 8.58 25.60 0.22 -27.48 15 5 H 0.07 3.59 7.71 -2.91 -0.02 3.57 15 6 C 0.03 1.44 5.30 84.65 0.45 1.89 15 7 N -0.91 -50.48 11.32 21.45 0.24 -50.24 15 8 Si 0.97 40.68 29.54 68.60 2.03 42.71 15 9 H -0.27 -10.76 7.11 99.48 0.71 -10.06 15 10 H -0.28 -11.77 7.11 99.48 0.71 -11.06 15 11 H -0.26 -10.63 7.11 99.48 0.71 -9.92 15 12 S 0.03 1.31 21.34 -56.49 -1.21 0.11 15 13 C 0.22 8.70 7.83 179.84 1.41 10.11 15 14 N -0.36 -16.36 9.72 -57.41 -0.56 -16.92 15 15 N -0.07 -2.84 13.38 37.02 0.50 -2.34 15 16 N -0.10 -3.74 13.45 37.02 0.50 -3.24 15 17 N -0.33 -11.04 4.01 -327.28 -1.31 -12.35 15 18 C 0.02 0.50 6.73 44.99 0.30 0.80 15 19 C -0.14 -2.06 10.22 30.59 0.31 -1.75 15 20 C -0.15 -2.34 10.46 30.59 0.32 -2.02 15 21 H 0.07 3.90 6.07 -2.39 -0.01 3.88 15 22 H 0.03 1.68 5.91 -2.39 -0.01 1.67 15 23 H 0.04 1.90 8.14 -2.39 -0.02 1.88 15 24 H 0.27 14.16 8.31 -92.72 -0.77 13.39 15 25 H 0.17 3.05 8.08 -2.39 -0.02 3.03 15 26 H 0.10 1.80 7.91 -2.39 -0.02 1.78 15 27 H 0.15 1.16 8.14 -2.39 -0.02 1.14 15 28 H 0.15 1.32 8.14 -2.39 -0.02 1.30 15 29 H 0.09 1.70 8.14 -2.39 -0.02 1.68 15 Total: -1.00 -63.36 268.96 5.06 -58.30 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: 1.16 Total: 3.89 kcal Atomic # 6 Polarization: -23.62 SS G_CDS: 3.71 Total: -19.91 kcal Atomic # 7 Polarization: -84.46 SS G_CDS: -0.64 Total: -85.10 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 2.03 Total: 42.71 kcal Atomic # 16 Polarization: 1.31 SS G_CDS: -1.21 Total: 0.11 kcal Total: -63.36 5.06 -58.30 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048247716.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.494 kcal (2) G-P(sol) polarization free energy of solvation -63.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds