Wall clock time and date at job start Mon Mar 30 2020 03:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86800 * 120.00351 * 2 1 4 4 H 1.48500 * 109.47350 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46893 * 299.99819 * 3 2 1 6 6 H 1.48493 * 109.47057 * 59.99878 * 3 2 1 7 7 C 1.38954 * 119.99962 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00345 * 179.72415 * 7 2 1 9 9 N 1.37105 * 119.99815 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99904 * 179.72596 * 9 7 2 11 11 O 1.21288 * 119.99985 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99735 * 179.97438 * 10 9 7 13 13 H 1.09003 * 109.47413 * 39.99829 * 12 10 9 14 14 N 1.46902 * 109.47176 * 159.99642 * 12 10 9 15 15 C 1.52995 * 109.47230 * 279.99756 * 12 10 9 16 16 C 1.50700 * 109.47390 * 175.00034 * 15 12 10 17 17 C 1.33390 * 125.20224 * 89.71761 * 16 15 12 18 18 C 1.38421 * 114.92217 * 179.86365 * 17 16 15 19 19 C 1.33390 * 114.92056 * 0.42592 * 18 17 16 20 20 S 1.75876 * 125.20455 * 270.02619 * 16 15 12 21 21 H 0.97000 * 119.99308 * 0.02562 * 1 2 3 22 22 H 0.97005 * 119.99906 * 359.71935 * 9 7 2 23 23 H 1.00898 * 110.99941 * 59.99453 * 14 12 10 24 24 H 1.00901 * 110.99915 * 183.95605 * 14 12 10 25 25 H 1.08998 * 109.46947 * 295.00049 * 15 12 10 26 26 H 1.08997 * 109.47418 * 55.00141 * 15 12 10 27 27 H 1.08007 * 122.54178 * 0.02562 * 17 16 15 28 28 H 1.08001 * 122.54406 * 180.20150 * 18 17 16 29 29 H 1.07996 * 125.20356 * 179.79275 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3963 -1.2125 6 1 1.8895 2.3964 1.2124 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2035 -0.0040 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5579 -0.0045 11 8 3.2100 -3.5579 -0.0095 12 6 1.2436 -4.8629 -0.0039 13 1 0.3774 -4.7827 -0.6608 14 7 2.1238 -5.9369 -0.4835 15 6 0.7776 -5.1822 1.4179 16 6 -0.0794 -6.4216 1.3994 17 6 0.3706 -7.6697 1.5371 18 6 -0.6054 -8.6502 1.4899 19 6 -1.8469 -8.1989 1.3050 20 16 -1.8249 -6.4443 1.1853 21 1 -0.4849 0.8401 -0.0004 22 1 0.3533 -2.3907 0.0043 23 1 2.9349 -6.0313 0.1092 24 1 1.6234 -6.8103 -0.5536 25 1 1.6455 -5.3500 2.0556 26 1 0.1975 -4.3452 1.8067 27 1 1.4169 -7.8979 1.6774 28 1 -0.3784 -9.7012 1.5913 29 1 -2.7305 -8.8165 1.2393 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048998448.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:43 Heat of formation + Delta-G solvation = -11.581790 kcal Electronic energy + Delta-G solvation = -14567.756895 eV Core-core repulsion = 12003.120094 eV Total energy + Delta-G solvation = -2564.636800 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.82743 -37.72302 -34.84908 -33.82584 -31.21930 -30.48498 -27.55014 -25.39196 -23.68351 -22.18520 -19.28978 -19.01592 -17.87700 -17.17092 -16.52406 -15.45710 -14.74621 -14.51294 -14.23007 -13.84705 -13.52871 -13.18159 -12.83673 -12.70707 -12.33571 -11.96263 -11.68535 -11.51045 -11.14721 -11.02212 -10.67004 -10.34354 -10.22962 -9.53086 -8.79817 -8.59878 -8.49779 -8.04247 -7.97373 -6.42312 -3.83098 0.97704 1.63141 2.01748 2.70188 3.16274 3.27106 3.34424 3.86032 4.15598 4.66477 4.89821 5.00760 5.14816 5.20542 5.43418 5.45444 5.53363 5.60904 5.87831 6.11077 6.17466 6.23007 6.31739 6.46676 7.46038 7.55187 7.84986 8.05938 8.59913 9.17053 9.52961 10.04204 10.75280 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.040250 B = 0.005630 C = 0.005073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.482918 B = 4972.428981 C = 5518.089299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.023 3.977 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.560 5.560 10 C 0.449 3.551 11 O -0.584 6.584 12 C 0.092 3.908 13 H 0.089 0.911 14 N -0.822 5.822 15 C -0.083 4.083 16 C -0.160 4.160 17 C -0.152 4.152 18 C -0.131 4.131 19 C -0.226 4.226 20 S 0.108 5.892 21 H 0.271 0.729 22 H 0.392 0.608 23 H 0.347 0.653 24 H 0.336 0.664 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.137 0.863 28 H 0.137 0.863 29 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.518 -13.812 3.617 15.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.179 4.179 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.429 4.429 8 H 0.122 0.878 9 N -0.196 5.196 10 C 0.234 3.766 11 O -0.468 6.468 12 C -0.025 4.025 13 H 0.107 0.893 14 N -0.352 5.352 15 C -0.125 4.125 16 C -0.278 4.278 17 C -0.182 4.182 18 C -0.161 4.161 19 C -0.361 4.361 20 S 0.371 5.629 21 H 0.081 0.919 22 H 0.225 0.775 23 H 0.161 0.839 24 H 0.149 0.851 25 H 0.105 0.895 26 H 0.104 0.896 27 H 0.155 0.845 28 H 0.154 0.846 29 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -5.866 -12.103 2.724 13.723 hybrid contribution 0.478 -0.769 1.154 1.467 sum -5.388 -12.872 3.879 14.483 Atomic orbital electron populations 1.69623 1.05930 1.28097 1.50453 1.25268 0.95638 0.99726 0.97253 0.85803 0.79738 0.81121 0.77718 1.19198 1.20710 1.20754 1.19767 0.93422 0.82178 1.47537 0.87827 1.41880 1.09186 1.04574 1.63968 1.19595 0.88151 0.84376 0.84437 1.90505 1.13786 1.86947 1.55561 1.21255 0.95793 0.92601 0.92836 0.89316 1.58494 1.10413 1.08034 1.58299 1.21035 0.98460 0.93394 0.99584 1.24619 0.96766 0.98879 1.07507 1.20129 1.00929 0.91328 1.05822 1.20119 0.91944 1.00634 1.03453 1.25609 1.01586 0.97782 1.11165 1.84495 1.04039 1.03182 1.71156 0.91878 0.77462 0.83859 0.85084 0.89503 0.89563 0.84514 0.84572 0.82182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.46 13.05 55.50 0.72 -23.74 15 2 C 0.02 0.61 5.50 -17.47 -0.10 0.52 15 3 Si 0.93 21.09 29.55 -169.99 -5.02 16.07 15 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 15 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 15 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 15 7 C -0.30 -8.38 9.68 -14.93 -0.14 -8.53 15 8 H 0.10 3.05 7.16 -52.49 -0.38 2.67 15 9 N -0.56 -14.26 5.29 -10.96 -0.06 -14.32 15 10 C 0.45 10.72 7.03 -10.99 -0.08 10.64 15 11 O -0.58 -15.99 15.83 5.55 0.09 -15.91 15 12 C 0.09 1.66 3.20 -68.87 -0.22 1.44 15 13 H 0.09 1.57 8.14 -51.93 -0.42 1.15 15 14 N -0.82 -13.66 8.93 -5.66 -0.05 -13.71 15 15 C -0.08 -1.28 5.34 -27.89 -0.15 -1.43 15 16 C -0.16 -2.12 5.29 -36.00 -0.19 -2.31 15 17 C -0.15 -1.77 8.98 -41.21 -0.37 -2.14 15 18 C -0.13 -1.36 10.18 -41.21 -0.42 -1.78 15 19 C -0.23 -2.36 11.23 29.04 0.33 -2.03 15 20 S 0.11 1.32 23.33 -107.50 -2.51 -1.19 15 21 H 0.27 6.96 8.31 -40.82 -0.34 6.62 15 22 H 0.39 9.58 7.90 -40.82 -0.32 9.25 15 23 H 0.35 5.76 8.58 -39.29 -0.34 5.42 15 24 H 0.34 4.68 7.46 -39.29 -0.29 4.39 15 25 H 0.09 1.33 8.14 -51.93 -0.42 0.91 15 26 H 0.09 1.39 8.14 -51.93 -0.42 0.97 15 27 H 0.14 1.43 8.06 -52.48 -0.42 1.00 15 28 H 0.14 1.10 8.06 -52.49 -0.42 0.68 15 29 H 0.16 1.28 8.06 -52.49 -0.42 0.86 15 LS Contribution 271.72 15.07 4.09 4.09 Total: -1.00 -30.78 271.72 -7.07 -37.85 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: -3.00 Total: 16.47 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: -1.34 Total: -5.62 kcal Atomic # 7 Polarization: -52.39 SS G_CDS: 0.62 Total: -51.77 kcal Atomic # 8 Polarization: -15.99 SS G_CDS: 0.09 Total: -15.91 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 1.32 SS G_CDS: -2.51 Total: -1.19 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.78 -7.07 -37.85 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048998448.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.272 kcal (2) G-P(sol) polarization free energy of solvation -30.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds