Wall clock time and date at job start Mon Mar 30 2020 03:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86800 * 120.00351 * 2 1 4 4 H 1.48500 * 109.47350 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46893 * 299.99819 * 3 2 1 6 6 H 1.48493 * 109.47057 * 59.99878 * 3 2 1 7 7 C 1.38954 * 119.99962 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00345 * 179.72415 * 7 2 1 9 9 N 1.37105 * 119.99815 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99904 * 179.72596 * 9 7 2 11 11 O 1.21288 * 119.99985 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99735 * 179.97438 * 10 9 7 13 13 H 1.09003 * 109.47413 * 39.99829 * 12 10 9 14 14 N 1.46902 * 109.47176 * 159.99642 * 12 10 9 15 15 C 1.52995 * 109.47230 * 279.99756 * 12 10 9 16 16 C 1.50700 * 109.47390 * 175.00034 * 15 12 10 17 17 C 1.33390 * 125.20224 * 89.71761 * 16 15 12 18 18 C 1.38421 * 114.92217 * 179.86365 * 17 16 15 19 19 C 1.33390 * 114.92056 * 0.42592 * 18 17 16 20 20 S 1.75876 * 125.20455 * 270.02619 * 16 15 12 21 21 H 0.97000 * 119.99308 * 0.02562 * 1 2 3 22 22 H 0.97005 * 119.99906 * 359.71935 * 9 7 2 23 23 H 1.00898 * 110.99941 * 59.99453 * 14 12 10 24 24 H 1.00901 * 110.99915 * 183.95605 * 14 12 10 25 25 H 1.08998 * 109.46947 * 295.00049 * 15 12 10 26 26 H 1.08997 * 109.47418 * 55.00141 * 15 12 10 27 27 H 1.08007 * 122.54178 * 0.02562 * 17 16 15 28 28 H 1.08001 * 122.54406 * 180.20150 * 18 17 16 29 29 H 1.07996 * 125.20356 * 179.79275 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3963 -1.2125 6 1 1.8895 2.3964 1.2124 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2035 -0.0040 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5579 -0.0045 11 8 3.2100 -3.5579 -0.0095 12 6 1.2436 -4.8629 -0.0039 13 1 0.3774 -4.7827 -0.6608 14 7 2.1238 -5.9369 -0.4835 15 6 0.7776 -5.1822 1.4179 16 6 -0.0794 -6.4216 1.3994 17 6 0.3706 -7.6697 1.5371 18 6 -0.6054 -8.6502 1.4899 19 6 -1.8469 -8.1989 1.3050 20 16 -1.8249 -6.4443 1.1853 21 1 -0.4849 0.8401 -0.0004 22 1 0.3533 -2.3907 0.0043 23 1 2.9349 -6.0313 0.1092 24 1 1.6234 -6.8103 -0.5536 25 1 1.6455 -5.3500 2.0556 26 1 0.1975 -4.3452 1.8067 27 1 1.4169 -7.8979 1.6774 28 1 -0.3784 -9.7012 1.5913 29 1 -2.7305 -8.8165 1.2393 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048998448.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:40 Heat of formation + Delta-G solvation = -34.061465 kcal Electronic energy + Delta-G solvation = -14568.731687 eV Core-core repulsion = 12003.120094 eV Total energy + Delta-G solvation = -2565.611592 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.51398 -38.87948 -36.38469 -35.74588 -33.26842 -31.63301 -28.86225 -27.11033 -25.05398 -23.43206 -20.89384 -20.14233 -19.89187 -18.48944 -17.87610 -16.73480 -16.41211 -16.09361 -15.71343 -15.59639 -15.07445 -14.59957 -14.18883 -13.72203 -13.52088 -13.44820 -13.16432 -13.02185 -12.87020 -12.43076 -12.29362 -12.11671 -11.60633 -11.53837 -10.42969 -10.04159 -9.86099 -9.47181 -9.33808 -8.48364 -5.97739 0.06719 0.70884 1.13974 1.35614 1.41354 1.55741 1.82686 2.01603 2.28454 3.04503 3.16836 3.66470 3.85303 4.05368 4.10235 4.27138 4.38761 4.50177 4.68941 4.79102 4.86238 5.21643 5.39013 5.40085 5.59946 5.92209 6.15505 6.55002 6.62400 7.09608 7.51635 8.06327 8.69077 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.040250 B = 0.005630 C = 0.005073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.482918 B = 4972.428981 C = 5518.089299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.011 4.011 3 Si 0.994 3.006 4 H -0.273 1.273 5 H -0.271 1.271 6 H -0.269 1.269 7 C -0.335 4.335 8 H 0.080 0.920 9 N -0.568 5.568 10 C 0.446 3.554 11 O -0.623 6.623 12 C 0.107 3.893 13 H 0.094 0.906 14 N -0.825 5.825 15 C -0.068 4.068 16 C -0.187 4.187 17 C -0.138 4.138 18 C -0.137 4.137 19 C -0.211 4.211 20 S 0.080 5.920 21 H 0.278 0.722 22 H 0.395 0.605 23 H 0.348 0.652 24 H 0.354 0.646 25 H 0.084 0.916 26 H 0.072 0.928 27 H 0.149 0.851 28 H 0.166 0.834 29 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.256 -15.084 3.831 16.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.211 4.211 3 Si 0.817 3.183 4 H -0.197 1.197 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.465 4.465 8 H 0.098 0.902 9 N -0.204 5.204 10 C 0.233 3.767 11 O -0.509 6.509 12 C -0.010 4.010 13 H 0.112 0.888 14 N -0.358 5.358 15 C -0.110 4.110 16 C -0.304 4.304 17 C -0.169 4.169 18 C -0.167 4.167 19 C -0.346 4.346 20 S 0.343 5.657 21 H 0.088 0.912 22 H 0.229 0.771 23 H 0.162 0.838 24 H 0.170 0.830 25 H 0.103 0.897 26 H 0.091 0.909 27 H 0.167 0.833 28 H 0.183 0.817 29 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -6.640 -13.398 2.939 15.239 hybrid contribution 0.681 -0.484 1.091 1.374 sum -5.960 -13.882 4.030 15.635 Atomic orbital electron populations 1.69683 1.06861 1.29334 1.50023 1.26063 0.96550 1.02443 0.96093 0.84863 0.78059 0.76990 0.78383 1.19732 1.19593 1.19447 1.19727 0.92746 0.83921 1.50084 0.90210 1.41935 1.09248 1.04716 1.64516 1.20610 0.88031 0.85806 0.82285 1.90468 1.15744 1.87872 1.56866 1.20993 0.95052 0.89931 0.94995 0.88824 1.58432 1.10479 1.08557 1.58335 1.20725 0.98634 0.94367 0.97312 1.24314 0.96968 0.98370 1.10769 1.20410 1.01993 0.90925 1.03554 1.20413 0.91408 1.01785 1.03097 1.25982 1.02787 0.96341 1.09474 1.84607 1.03692 1.05643 1.71729 0.91205 0.77114 0.83772 0.83039 0.89722 0.90936 0.83294 0.81664 0.79456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.93 13.05 21.66 0.28 -49.65 15 2 C -0.01 -0.62 5.50 84.93 0.47 -0.15 15 3 Si 0.99 43.23 29.55 68.60 2.03 45.26 15 4 H -0.27 -11.99 7.11 99.48 0.71 -11.29 15 5 H -0.27 -11.29 7.11 99.48 0.71 -10.58 15 6 H -0.27 -11.15 7.11 99.48 0.71 -10.45 15 7 C -0.34 -19.31 9.68 84.04 0.81 -18.49 15 8 H 0.08 4.90 7.16 -2.92 -0.02 4.88 15 9 N -0.57 -29.81 5.29 -306.99 -1.62 -31.43 15 10 C 0.45 21.81 7.03 87.66 0.62 22.42 15 11 O -0.62 -35.12 15.83 -3.05 -0.05 -35.17 15 12 C 0.11 3.85 3.20 44.17 0.14 4.00 15 13 H 0.09 3.31 8.14 -2.39 -0.02 3.29 15 14 N -0.83 -26.78 8.93 -171.81 -1.53 -28.32 15 15 C -0.07 -2.11 5.34 29.85 0.16 -1.95 15 16 C -0.19 -4.72 5.29 24.59 0.13 -4.59 15 17 C -0.14 -2.87 8.98 21.22 0.19 -2.68 15 18 C -0.14 -2.36 10.18 21.22 0.22 -2.14 15 19 C -0.21 -3.71 11.23 66.72 0.75 -2.96 15 20 S 0.08 1.86 23.33 -56.49 -1.32 0.54 15 21 H 0.28 14.10 8.31 -92.71 -0.77 13.33 15 22 H 0.40 19.87 7.90 -92.70 -0.73 19.14 15 23 H 0.35 11.34 8.58 -89.70 -0.77 10.57 15 24 H 0.35 9.24 7.46 -89.69 -0.67 8.57 15 25 H 0.08 2.60 8.14 -2.39 -0.02 2.58 15 26 H 0.07 2.40 8.14 -2.39 -0.02 2.38 15 27 H 0.15 2.69 8.06 -2.91 -0.02 2.67 15 28 H 0.17 1.91 8.06 -2.91 -0.02 1.88 15 29 H 0.19 2.22 8.06 -2.91 -0.02 2.20 15 Total: -1.00 -66.46 271.72 0.30 -66.16 By element: Atomic # 1 Polarization: 40.13 SS G_CDS: -0.97 Total: 39.16 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: 3.48 Total: -6.55 kcal Atomic # 7 Polarization: -106.53 SS G_CDS: -2.88 Total: -109.40 kcal Atomic # 8 Polarization: -35.12 SS G_CDS: -0.05 Total: -35.17 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -1.32 Total: 0.54 kcal Total: -66.46 0.30 -66.16 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048998448.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.103 kcal (2) G-P(sol) polarization free energy of solvation -66.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds