Wall clock time and date at job start Mon Mar 30 2020 03:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00484 * 2 1 4 4 H 1.48500 * 109.47100 * 270.00138 * 3 2 1 5 5 H 1.48503 * 109.46807 * 29.99843 * 3 2 1 6 6 H 1.48500 * 109.47327 * 150.00281 * 3 2 1 7 7 C 1.37882 * 119.99430 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99872 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00324 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47297 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46976 * 179.97438 * 10 9 7 12 12 S 1.81002 * 109.47085 * 180.02562 * 11 10 9 13 13 C 1.76199 * 100.00182 * 180.02562 * 12 11 10 14 14 N 1.32555 * 119.19223 * 0.02562 * 13 12 11 15 15 C 1.32414 * 120.87791 * 179.97438 * 14 13 12 16 16 C 1.38258 * 119.27335 * 0.02562 * 15 14 13 17 17 C 1.39413 * 118.51945 * 0.02562 * 16 15 14 18 18 O 1.35509 * 120.46035 * 180.02562 * 17 16 15 19 19 N 1.32522 * 119.19334 * 179.73402 * 13 12 11 20 20 H 0.96995 * 119.99465 * 359.97438 * 1 2 3 21 21 H 1.09005 * 109.46836 * 60.00337 * 9 7 2 22 22 H 1.08996 * 109.47837 * 300.00760 * 9 7 2 23 23 H 1.09001 * 109.46310 * 60.00540 * 10 9 7 24 24 H 1.08996 * 109.46979 * 300.00321 * 10 9 7 25 25 H 1.09005 * 109.46968 * 60.00604 * 11 10 9 26 26 H 1.09000 * 109.47398 * 300.00482 * 11 10 9 27 27 H 1.07998 * 120.36312 * 179.97438 * 15 14 13 28 28 H 1.07998 * 120.73891 * 180.02562 * 16 15 14 29 29 H 0.96705 * 114.00412 * 89.99526 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5469 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0018 11 6 1.4800 -4.9871 -0.0012 12 16 2.6561 -6.3630 -0.0019 13 6 1.5359 -7.7231 -0.0018 14 7 0.2317 -7.4865 -0.0018 15 6 -0.6398 -8.4834 -0.0022 16 6 -0.1768 -9.7861 -0.0021 17 6 1.2003 -10.0031 -0.0011 18 8 1.6971 -11.2638 -0.0015 19 7 2.0180 -8.9575 -0.0076 20 1 -0.4849 0.8400 0.0004 21 1 0.6240 -2.5567 -0.8904 22 1 0.6245 -2.5571 0.8895 23 1 2.8724 -3.6048 0.8878 24 1 2.8711 -3.6041 -0.8922 25 1 0.8524 -5.0447 -0.8906 26 1 0.8543 -5.0450 0.8894 27 1 -1.7007 -8.2811 -0.0017 28 1 -0.8666 -10.6171 -0.0029 29 1 1.8421 -11.6293 -0.8850 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049579604.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:39 Heat of formation + Delta-G solvation = -9.220819 kcal Electronic energy + Delta-G solvation = -13826.485627 eV Core-core repulsion = 11261.951207 eV Total energy + Delta-G solvation = -2564.534421 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.09868 -37.85782 -34.52762 -33.43743 -32.08650 -31.60504 -27.53528 -24.98807 -24.35436 -23.27030 -20.43093 -19.59378 -18.07345 -17.13849 -16.35459 -15.99775 -15.53950 -14.86361 -14.62120 -14.41445 -14.08899 -13.85218 -12.56124 -12.40146 -11.86498 -11.83782 -11.26264 -10.91143 -10.88117 -10.77377 -10.55125 -10.25572 -10.17521 -9.81029 -9.48270 -9.36707 -9.12317 -8.37114 -7.69790 -6.02048 -4.04760 0.52940 0.80607 1.29754 2.39695 3.13304 3.31969 3.38208 3.41894 3.47285 4.18553 4.44978 4.47385 4.80044 4.88934 5.27985 5.33896 5.52764 5.62028 5.87705 6.14869 6.48930 6.66544 6.68342 6.97192 7.04535 7.63233 7.69921 7.74676 7.96790 8.37620 9.01632 9.59390 11.09156 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.068607 B = 0.003945 C = 0.003745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.024010 B = 7095.968624 C = 7475.686694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.030 3.970 10 C -0.099 4.099 11 C -0.096 4.096 12 S -0.004 6.004 13 C 0.325 3.675 14 N -0.527 5.527 15 C 0.179 3.821 16 C -0.262 4.262 17 C 0.372 3.628 18 O -0.477 6.477 19 N -0.529 5.529 20 H 0.261 0.739 21 H 0.019 0.981 22 H 0.020 0.980 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.176 0.824 28 H 0.152 0.848 29 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.809 -19.650 -1.734 19.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.560 4.560 8 H 0.075 0.925 9 C -0.009 4.009 10 C -0.139 4.139 11 C -0.245 4.245 12 S 0.235 5.765 13 C -0.050 4.050 14 N -0.246 5.246 15 C 0.011 3.989 16 C -0.290 4.290 17 C 0.181 3.819 18 O -0.284 6.284 19 N -0.257 5.257 20 H 0.070 0.930 21 H 0.038 0.962 22 H 0.038 0.962 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.111 0.889 26 H 0.111 0.889 27 H 0.193 0.807 28 H 0.169 0.831 29 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 0.925 -18.702 -1.140 18.760 hybrid contribution -1.564 -0.180 -0.452 1.638 sum -0.639 -18.882 -1.591 18.959 Atomic orbital electron populations 1.69967 1.06053 1.26674 1.50672 1.25026 0.94876 0.99308 0.95256 0.86566 0.79843 0.83324 0.78118 1.20643 1.21217 1.19828 1.21216 0.93122 0.90833 1.50839 0.92511 1.19081 0.93687 0.90464 0.97686 1.21568 0.99416 0.91291 1.01646 1.23947 0.99559 0.94159 1.06822 1.86052 1.09067 0.93055 1.88326 1.25103 0.92281 0.94594 0.92998 1.68930 1.02082 1.36471 1.17125 1.23211 1.00362 0.87395 0.87938 1.22800 0.96213 1.00264 1.09731 1.19426 0.87772 0.84821 0.89929 1.84714 1.86257 1.23147 1.34302 1.68047 1.41053 0.98616 1.17944 0.92959 0.96220 0.96199 0.92215 0.92210 0.88922 0.88944 0.80704 0.83055 0.73325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.64 13.29 55.43 0.74 -25.91 15 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 15 3 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 15 4 H -0.28 -6.66 7.11 56.52 0.40 -6.25 15 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 15 6 H -0.27 -6.46 7.11 56.52 0.40 -6.06 15 7 C -0.52 -14.60 9.11 -34.44 -0.31 -14.91 15 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 15 9 C 0.03 0.76 4.97 -27.88 -0.14 0.62 15 10 C -0.10 -2.01 5.16 -26.73 -0.14 -2.15 15 11 C -0.10 -1.68 4.81 37.16 0.18 -1.50 15 12 S 0.00 -0.06 22.25 -107.50 -2.39 -2.45 15 13 C 0.32 5.12 7.85 -90.87 -0.71 4.40 15 14 N -0.53 -7.73 9.13 -13.51 -0.12 -7.86 15 15 C 0.18 1.93 11.29 -17.29 -0.20 1.73 15 16 C -0.26 -2.50 10.12 -39.14 -0.40 -2.90 15 17 C 0.37 4.41 7.83 -16.72 -0.13 4.28 15 18 O -0.48 -4.44 13.57 -18.22 -0.25 -4.69 15 19 N -0.53 -7.97 10.42 -13.50 -0.14 -8.11 15 20 H 0.26 7.33 8.31 -40.82 -0.34 6.99 15 21 H 0.02 0.52 8.14 -51.93 -0.42 0.10 15 22 H 0.02 0.53 8.14 -51.93 -0.42 0.10 15 23 H 0.06 1.19 8.14 -51.93 -0.42 0.77 15 24 H 0.06 1.18 8.14 -51.93 -0.42 0.76 15 25 H 0.09 1.62 8.11 -51.91 -0.42 1.20 15 26 H 0.09 1.63 8.11 -51.92 -0.42 1.21 15 27 H 0.18 1.24 8.06 -52.49 -0.42 0.82 15 28 H 0.15 0.93 8.06 -52.49 -0.42 0.50 15 29 H 0.41 1.57 9.06 45.56 0.41 1.99 15 LS Contribution 276.13 15.07 4.16 4.16 Total: -1.00 -32.95 276.13 -7.48 -40.43 By element: Atomic # 1 Polarization: -0.67 SS G_CDS: -2.51 Total: -3.18 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -1.94 Total: -8.90 kcal Atomic # 7 Polarization: -42.35 SS G_CDS: 0.47 Total: -41.88 kcal Atomic # 8 Polarization: -4.44 SS G_CDS: -0.25 Total: -4.69 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -0.06 SS G_CDS: -2.39 Total: -2.45 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -32.95 -7.48 -40.43 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049579604.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.210 kcal (2) G-P(sol) polarization free energy of solvation -32.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds