Wall clock time and date at job start Mon Mar 30 2020 03:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00277 * 2 1 4 4 H 1.48501 * 109.47256 * 269.99799 * 3 2 1 5 5 H 1.48507 * 109.47145 * 30.00047 * 3 2 1 6 6 H 1.48503 * 109.47419 * 150.00004 * 3 2 1 7 7 C 1.37883 * 119.99755 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99871 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99835 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46633 * 179.97438 * 9 7 2 11 11 S 1.81401 * 109.46959 * 180.02562 * 10 9 7 12 12 O 1.42104 * 109.47028 * 70.94155 * 11 10 9 13 13 C 1.76201 * 103.00061 * 179.97438 * 11 10 9 14 14 C 1.38540 * 120.81507 * 98.21245 * 13 11 10 15 15 C 1.38232 * 119.23794 * 180.02562 * 14 13 11 16 16 N 1.31884 * 120.93333 * 359.97438 * 15 14 13 17 17 C 1.31798 * 121.79780 * 359.70390 * 16 15 14 18 18 C 1.38938 * 120.65035 * 0.58886 * 17 16 15 19 19 N 1.39704 * 120.49109 * 179.70523 * 18 17 16 20 20 H 0.97002 * 120.00035 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.47254 * 59.99771 * 9 7 2 22 22 H 1.08992 * 109.46928 * 299.99712 * 9 7 2 23 23 H 1.08999 * 109.47215 * 60.00081 * 10 9 7 24 24 H 1.09001 * 109.47327 * 299.99525 * 10 9 7 25 25 H 1.07993 * 120.38504 * 359.97438 * 14 13 11 26 26 H 1.07995 * 119.53882 * 179.97438 * 15 14 13 27 27 H 1.08000 * 119.67328 * 180.28519 * 17 16 15 28 28 H 0.96998 * 119.99999 * 194.80397 * 19 18 17 29 29 H 0.97006 * 120.00222 * 14.51909 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 16 1.3381 -5.2331 -0.0002 12 8 0.7228 -5.4242 -1.2668 13 6 2.6267 -6.4348 -0.0009 14 6 3.0299 -7.0437 1.1764 15 6 4.0445 -7.9817 1.1383 16 7 4.6293 -8.3020 0.0004 17 6 4.2724 -7.7517 -1.1428 18 6 3.2647 -6.7962 -1.1849 19 7 2.8933 -6.2105 -2.3976 20 1 -0.4850 0.8401 -0.0004 21 1 0.6245 -2.5571 -0.8896 22 1 0.6240 -2.5567 0.8903 23 1 2.8718 -3.6044 0.8905 24 1 2.8717 -3.6044 -0.8895 25 1 2.5575 -6.7879 2.1132 26 1 4.3629 -8.4591 2.0532 27 1 4.7716 -8.0429 -2.0552 28 1 2.3535 -5.4046 -2.4019 29 1 3.1787 -6.6075 -3.2355 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050478188.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:10 Heat of formation + Delta-G solvation = -35.484172 kcal Electronic energy + Delta-G solvation = -14543.039587 eV Core-core repulsion = 11977.366302 eV Total energy + Delta-G solvation = -2565.673285 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.99572 -37.16462 -35.84369 -35.72571 -33.04027 -32.85516 -29.94514 -27.35228 -25.02363 -23.84768 -23.05521 -19.21792 -18.74716 -18.60548 -17.85480 -17.34968 -16.55186 -16.15721 -15.57466 -15.47780 -15.15824 -14.92976 -14.79945 -14.31624 -13.68601 -13.32069 -12.97495 -12.78497 -12.63647 -12.30726 -12.00739 -11.95575 -11.56374 -11.21010 -10.77597 -10.59572 -10.34381 -9.33416 -8.81072 -8.21854 -6.33979 -0.07018 0.38625 0.90050 1.39462 1.39785 1.51260 1.85821 2.39484 2.68858 2.83946 3.02367 3.10634 3.71197 3.96395 4.09388 4.28577 4.47644 4.52082 4.74668 4.80236 5.00298 5.06086 5.42639 5.52764 5.69281 5.77114 6.18808 6.23667 6.60601 6.79913 7.05238 7.35096 8.88492 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.038920 B = 0.005646 C = 0.005512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.260152 B = 4958.284069 C = 5078.158713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.002 3.998 3 Si 0.962 3.038 4 H -0.280 1.280 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.541 4.541 8 H 0.058 0.942 9 C 0.038 3.962 10 C -0.426 4.426 11 S 1.388 4.612 12 O -0.907 6.907 13 C -0.515 4.515 14 C -0.034 4.034 15 C 0.008 3.992 16 N -0.447 5.447 17 C -0.001 4.001 18 C 0.206 3.794 19 N -0.863 5.863 20 H 0.266 0.734 21 H -0.017 1.017 22 H 0.031 0.969 23 H 0.128 0.872 24 H 0.053 0.947 25 H 0.195 0.805 26 H 0.191 0.809 27 H 0.164 0.836 28 H 0.401 0.599 29 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.920 -13.947 4.854 15.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.196 4.196 3 Si 0.787 3.213 4 H -0.206 1.206 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.580 4.580 8 H 0.076 0.924 9 C 0.000 4.000 10 C -0.564 4.564 11 S 1.587 4.413 12 O -0.902 6.902 13 C -0.624 4.624 14 C -0.055 4.055 15 C -0.151 4.151 16 N -0.155 5.155 17 C -0.165 4.165 18 C 0.094 3.906 19 N -0.405 5.405 20 H 0.075 0.925 21 H 0.001 0.999 22 H 0.049 0.951 23 H 0.146 0.854 24 H 0.072 0.928 25 H 0.212 0.788 26 H 0.207 0.793 27 H 0.181 0.819 28 H 0.234 0.766 29 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 5.446 -14.633 4.848 16.349 hybrid contribution 0.944 1.976 -2.646 3.435 sum 6.390 -12.657 2.202 14.348 Atomic orbital electron populations 1.70065 1.07588 1.27974 1.51221 1.25937 0.95803 1.03160 0.94702 0.85489 0.78914 0.78723 0.78183 1.20584 1.20248 1.18551 1.21608 0.93421 0.92017 1.50986 0.92393 1.18645 0.93494 0.91745 0.96125 1.27721 1.08878 1.13323 1.06449 1.68627 0.83655 0.81730 1.07254 1.92879 1.67325 1.83246 1.46753 1.28065 1.17969 1.19017 0.97375 1.22228 0.93840 0.91660 0.97763 1.23185 0.96304 0.99044 0.96540 1.67472 1.25925 1.22888 0.99199 1.22524 0.97575 0.98703 0.97725 1.18975 0.91885 0.92499 0.87267 1.43005 1.59860 1.32339 1.05320 0.92545 0.99861 0.95097 0.85365 0.92829 0.78814 0.79261 0.81903 0.76611 0.76146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.12 13.29 21.45 0.28 -54.83 15 2 C 0.00 0.14 5.46 84.66 0.46 0.60 15 3 Si 0.96 43.51 29.54 68.60 2.03 45.53 15 4 H -0.28 -12.53 7.11 99.48 0.71 -11.82 15 5 H -0.28 -12.12 7.11 99.48 0.71 -11.41 15 6 H -0.26 -11.22 7.11 99.48 0.71 -10.52 15 7 C -0.54 -30.08 9.11 25.60 0.23 -29.84 15 8 H 0.06 3.11 7.74 -2.91 -0.02 3.09 15 9 C 0.04 1.92 4.98 29.85 0.15 2.06 15 10 C -0.43 -16.08 5.82 71.98 0.42 -15.66 15 11 S 1.39 41.21 13.22 -56.49 -0.75 40.46 15 12 O -0.91 -36.79 14.95 -148.98 -2.23 -39.01 15 13 C -0.51 -13.81 5.62 22.59 0.13 -13.68 15 14 C -0.03 -0.66 9.85 22.34 0.22 -0.44 15 15 C 0.01 0.16 11.17 84.68 0.95 1.11 15 16 N -0.45 -11.65 10.35 -195.28 -2.02 -13.67 15 17 C 0.00 -0.01 11.08 84.87 0.94 0.93 15 18 C 0.21 6.06 6.71 38.30 0.26 6.32 15 19 N -0.86 -25.90 8.47 -51.12 -0.43 -26.33 15 20 H 0.27 14.80 8.31 -92.71 -0.77 14.03 15 21 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 15 22 H 0.03 1.51 8.14 -2.39 -0.02 1.49 15 23 H 0.13 4.16 8.14 -2.39 -0.02 4.14 15 24 H 0.05 2.18 8.14 -2.39 -0.02 2.16 15 25 H 0.19 1.74 8.06 -2.91 -0.02 1.71 15 26 H 0.19 2.41 8.06 -2.91 -0.02 2.38 15 27 H 0.16 3.63 8.06 -2.91 -0.02 3.60 15 28 H 0.40 14.12 6.12 -92.71 -0.57 13.55 15 29 H 0.41 9.75 8.88 -92.70 -0.82 8.93 15 Total: -1.00 -76.55 268.75 0.42 -76.12 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: -0.21 Total: 20.34 kcal Atomic # 6 Polarization: -52.36 SS G_CDS: 3.75 Total: -48.61 kcal Atomic # 7 Polarization: -92.67 SS G_CDS: -2.17 Total: -94.84 kcal Atomic # 8 Polarization: -36.79 SS G_CDS: -2.23 Total: -39.01 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 16 Polarization: 41.21 SS G_CDS: -0.75 Total: 40.46 kcal Total: -76.55 0.42 -76.12 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050478188.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.638 kcal (2) G-P(sol) polarization free energy of solvation -76.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds