Wall clock time and date at job start Mon Mar 30 2020 03:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00260 * 2 1 4 4 C 1.38234 * 120.00240 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00037 * 0.26327 * 4 3 2 6 6 C 1.50693 * 120.00207 * 179.72405 * 5 4 3 7 7 S 1.81401 * 109.47312 * 89.99480 * 6 5 4 8 8 O 1.42098 * 110.54185 * 291.62795 * 7 6 5 9 9 O 1.42099 * 110.54483 * 68.37381 * 7 6 5 10 10 C 1.76193 * 104.45122 * 180.02562 * 7 6 5 11 11 H 1.08005 * 120.00022 * 0.02562 * 10 7 6 12 12 C 1.37880 * 120.00449 * 179.97438 * 10 7 6 13 13 N 1.31518 * 119.99508 * 0.02562 * 12 10 7 14 14 Si 1.86797 * 120.00271 * 179.97438 * 12 10 7 15 15 H 1.48500 * 109.47211 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.47096 * 120.00591 * 14 12 10 17 17 H 1.48504 * 109.46935 * 239.99962 * 14 12 10 18 18 C 1.38238 * 119.99752 * 359.47832 * 5 4 3 19 19 C 1.38234 * 120.00033 * 0.49775 * 18 5 4 20 20 H 1.09000 * 109.46827 * 89.99810 * 1 2 3 21 21 H 1.08999 * 109.47240 * 210.00239 * 1 2 3 22 22 H 1.08999 * 109.46861 * 329.99859 * 1 2 3 23 23 H 1.07999 * 119.99751 * 359.97438 * 3 2 1 24 24 H 1.08002 * 119.99744 * 179.97438 * 4 3 2 25 25 H 1.09000 * 109.47097 * 209.99342 * 6 5 4 26 26 H 1.09001 * 109.47081 * 329.99847 * 6 5 4 27 27 H 0.97004 * 119.99827 * 179.97438 * 13 12 10 28 28 H 1.07999 * 119.99934 * 180.25938 * 18 5 4 29 29 H 1.08001 * 120.00294 * 179.76453 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 -0.0044 6 6 5.7787 0.0000 -0.0101 7 16 6.3899 -0.0033 1.6978 8 8 6.0961 1.2325 2.3348 9 8 6.0961 -1.2414 2.3302 10 6 8.1444 -0.0022 1.5369 11 1 8.5968 0.0003 0.5562 12 6 8.9401 -0.0037 2.6630 13 7 8.3892 -0.0063 3.8573 14 14 10.8002 -0.0033 2.4924 15 1 11.1653 -0.0008 1.0530 16 1 11.3570 1.2083 3.1460 17 1 11.3571 -1.2167 3.1427 18 6 3.5805 -1.1972 0.0010 19 6 2.1982 -1.1972 0.0009 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 -0.8899 0.5139 22 1 -0.3633 0.8900 0.5139 23 1 1.6582 2.1324 -0.0004 24 1 4.1205 2.1325 0.0001 25 1 6.1400 -0.8891 -0.5270 26 1 6.1401 0.8909 -0.5236 27 1 8.9489 -0.0077 4.6495 28 1 4.1205 -2.1325 0.0013 29 1 1.6582 -2.1325 0.0013 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058254928.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:56 Heat of formation + Delta-G solvation = -74.272403 kcal Electronic energy + Delta-G solvation = -14781.594982 eV Core-core repulsion = 12181.946962 eV Total energy + Delta-G solvation = -2599.648020 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.061 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.17813 -35.03769 -34.02577 -33.71308 -32.95744 -30.70324 -29.19302 -26.20099 -24.76161 -22.50178 -20.71054 -18.58503 -16.81651 -15.98517 -15.53625 -15.37933 -14.89812 -14.39703 -13.93778 -13.83975 -13.63005 -13.19259 -12.69034 -12.44228 -11.99198 -11.84940 -11.75222 -11.22879 -11.21039 -10.95638 -10.73577 -10.55757 -10.21828 -10.13580 -9.77472 -9.20465 -8.71605 -8.70050 -8.07959 -6.64329 -5.28275 1.36720 1.63200 2.05801 3.07616 3.14916 3.21621 3.97542 4.06020 4.68693 4.76047 4.95684 5.03873 5.22562 5.23756 5.55190 5.55219 5.58630 5.68925 5.74777 5.84801 5.91979 6.08158 6.28041 6.33466 6.62055 6.68930 6.76022 6.87524 7.21867 7.33203 7.94829 8.92245 10.29841 Molecular weight = 240.06amu Principal moments of inertia in cm(-1) A = 0.061833 B = 0.006169 C = 0.006143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.724991 B = 4537.392014 C = 4557.059924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.097 4.097 3 C -0.120 4.120 4 C -0.108 4.108 5 C -0.076 4.076 6 C -0.597 4.597 7 S 2.531 3.469 8 O -0.973 6.973 9 O -0.973 6.973 10 C -1.011 5.011 11 H 0.100 0.900 12 C 0.133 3.867 13 N -0.833 5.833 14 Si 0.919 3.081 15 H -0.262 1.262 16 H -0.271 1.271 17 H -0.271 1.271 18 C -0.108 4.108 19 C -0.120 4.120 20 H 0.067 0.933 21 H 0.065 0.935 22 H 0.065 0.935 23 H 0.123 0.877 24 H 0.130 0.870 25 H 0.128 0.872 26 H 0.128 0.872 27 H 0.288 0.712 28 H 0.130 0.870 29 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.316 0.012 -8.493 12.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.097 4.097 3 C -0.138 4.138 4 C -0.126 4.126 5 C -0.077 4.077 6 C -0.718 4.718 7 S 2.714 3.286 8 O -0.970 6.970 9 O -0.970 6.970 10 C -1.144 5.144 11 H 0.118 0.882 12 C -0.085 4.085 13 N -0.462 5.462 14 Si 0.743 3.257 15 H -0.186 1.186 16 H -0.196 1.196 17 H -0.196 1.196 18 C -0.126 4.126 19 C -0.138 4.138 20 H 0.085 0.915 21 H 0.084 0.916 22 H 0.084 0.916 23 H 0.141 0.859 24 H 0.147 0.853 25 H 0.147 0.853 26 H 0.147 0.853 27 H 0.099 0.901 28 H 0.148 0.852 29 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.852 0.010 -7.566 12.422 hybrid contribution 1.549 0.003 -0.817 1.751 sum -8.303 0.013 -8.383 11.798 Atomic orbital electron populations 1.20756 0.91334 1.02684 1.01956 1.19923 0.95962 0.93332 1.00494 1.20978 0.93894 0.97529 1.01371 1.21180 0.94409 0.97840 0.99195 1.19249 0.93058 0.93974 1.01464 1.29765 0.99810 1.10742 1.31467 1.03714 0.77329 0.74397 0.73175 1.93347 1.86957 1.46287 1.70439 1.93347 1.86953 1.46108 1.70621 1.30266 1.16334 1.67458 1.00318 0.88187 1.24739 1.01640 0.88695 0.93458 1.69963 1.38377 1.39217 0.98652 0.86157 0.81469 0.78593 0.79470 1.18593 1.19584 1.19577 1.21182 0.94412 0.97843 0.99194 1.20979 0.93893 0.97530 1.01367 0.91468 0.91632 0.91632 0.85910 0.85252 0.85316 0.85317 0.90138 0.85246 0.85907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 10.01 36.01 0.36 -0.75 15 2 C -0.10 -1.35 5.88 -104.62 -0.62 -1.96 15 3 C -0.12 -1.77 9.70 -39.58 -0.38 -2.15 15 4 C -0.11 -1.85 9.70 -39.58 -0.38 -2.23 15 5 C -0.08 -1.43 5.14 -104.63 -0.54 -1.97 15 6 C -0.60 -11.60 6.11 36.00 0.22 -11.38 15 7 S 2.53 66.55 4.46 -107.50 -0.48 66.08 15 8 O -0.97 -28.42 17.85 -57.54 -1.03 -29.45 15 9 O -0.97 -28.41 17.85 -57.54 -1.03 -29.44 15 10 C -1.01 -27.79 9.32 30.60 0.29 -27.50 15 11 H 0.10 2.46 7.81 -52.48 -0.41 2.05 15 12 C 0.13 3.75 5.46 -17.82 -0.10 3.65 15 13 N -0.83 -24.87 13.03 55.43 0.72 -24.15 15 14 Si 0.92 20.61 29.54 -169.99 -5.02 15.59 15 15 H -0.26 -5.62 7.11 56.52 0.40 -5.21 15 16 H -0.27 -5.85 7.11 56.52 0.40 -5.45 15 17 H -0.27 -5.85 7.11 56.52 0.40 -5.45 15 18 C -0.11 -1.85 9.70 -39.58 -0.38 -2.24 15 19 C -0.12 -1.77 9.70 -39.58 -0.38 -2.15 15 20 H 0.07 0.58 8.14 -51.93 -0.42 0.16 15 21 H 0.06 0.59 8.09 -51.93 -0.42 0.17 15 22 H 0.06 0.59 8.09 -51.93 -0.42 0.17 15 23 H 0.12 1.45 8.06 -52.49 -0.42 1.03 15 24 H 0.13 2.06 8.06 -52.49 -0.42 1.64 15 25 H 0.13 2.19 8.09 -51.92 -0.42 1.78 15 26 H 0.13 2.19 8.09 -51.92 -0.42 1.78 15 27 H 0.29 7.70 8.31 -40.82 -0.34 7.36 15 28 H 0.13 2.07 8.06 -52.49 -0.42 1.64 15 29 H 0.12 1.45 8.06 -52.49 -0.42 1.03 15 LS Contribution 273.62 15.07 4.12 4.12 Total: -1.00 -35.27 273.62 -7.97 -43.24 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -3.34 Total: 2.70 kcal Atomic # 6 Polarization: -46.76 SS G_CDS: -1.92 Total: -48.68 kcal Atomic # 7 Polarization: -24.87 SS G_CDS: 0.72 Total: -24.15 kcal Atomic # 8 Polarization: -56.84 SS G_CDS: -2.05 Total: -58.89 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: 66.55 SS G_CDS: -0.48 Total: 66.08 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -35.27 -7.97 -43.24 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058254928.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.035 kcal (2) G-P(sol) polarization free energy of solvation -35.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds