Wall clock time and date at job start Mon Mar 30 2020 03:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00260 * 2 1 4 4 C 1.38234 * 120.00240 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00037 * 0.26327 * 4 3 2 6 6 C 1.50693 * 120.00207 * 179.72405 * 5 4 3 7 7 S 1.81401 * 109.47312 * 89.99480 * 6 5 4 8 8 O 1.42098 * 110.54185 * 291.62795 * 7 6 5 9 9 O 1.42099 * 110.54483 * 68.37381 * 7 6 5 10 10 C 1.76193 * 104.45122 * 180.02562 * 7 6 5 11 11 H 1.08005 * 120.00022 * 0.02562 * 10 7 6 12 12 C 1.37880 * 120.00449 * 179.97438 * 10 7 6 13 13 N 1.31518 * 119.99508 * 0.02562 * 12 10 7 14 14 Si 1.86797 * 120.00271 * 179.97438 * 12 10 7 15 15 H 1.48500 * 109.47211 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.47096 * 120.00591 * 14 12 10 17 17 H 1.48504 * 109.46935 * 239.99962 * 14 12 10 18 18 C 1.38238 * 119.99752 * 359.47832 * 5 4 3 19 19 C 1.38234 * 120.00033 * 0.49775 * 18 5 4 20 20 H 1.09000 * 109.46827 * 89.99810 * 1 2 3 21 21 H 1.08999 * 109.47240 * 210.00239 * 1 2 3 22 22 H 1.08999 * 109.46861 * 329.99859 * 1 2 3 23 23 H 1.07999 * 119.99751 * 359.97438 * 3 2 1 24 24 H 1.08002 * 119.99744 * 179.97438 * 4 3 2 25 25 H 1.09000 * 109.47097 * 209.99342 * 6 5 4 26 26 H 1.09001 * 109.47081 * 329.99847 * 6 5 4 27 27 H 0.97004 * 119.99827 * 179.97438 * 13 12 10 28 28 H 1.07999 * 119.99934 * 180.25938 * 18 5 4 29 29 H 1.08001 * 120.00294 * 179.76453 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 -0.0044 6 6 5.7787 0.0000 -0.0101 7 16 6.3899 -0.0033 1.6978 8 8 6.0961 1.2325 2.3348 9 8 6.0961 -1.2414 2.3302 10 6 8.1444 -0.0022 1.5369 11 1 8.5968 0.0003 0.5562 12 6 8.9401 -0.0037 2.6630 13 7 8.3892 -0.0063 3.8573 14 14 10.8002 -0.0033 2.4924 15 1 11.1653 -0.0008 1.0530 16 1 11.3570 1.2083 3.1460 17 1 11.3571 -1.2167 3.1427 18 6 3.5805 -1.1972 0.0010 19 6 2.1982 -1.1972 0.0009 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 -0.8899 0.5139 22 1 -0.3633 0.8900 0.5139 23 1 1.6582 2.1324 -0.0004 24 1 4.1205 2.1325 0.0001 25 1 6.1400 -0.8891 -0.5270 26 1 6.1401 0.8909 -0.5236 27 1 8.9489 -0.0077 4.6495 28 1 4.1205 -2.1325 0.0013 29 1 1.6582 -2.1325 0.0013 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058254928.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:55 Heat of formation + Delta-G solvation = -99.828701 kcal Electronic energy + Delta-G solvation = -14782.703187 eV Core-core repulsion = 12181.946962 eV Total energy + Delta-G solvation = -2600.756225 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.061 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.37740 -37.18055 -36.15210 -35.17419 -34.82170 -31.90132 -30.42642 -28.27764 -26.00808 -23.70778 -21.96992 -20.58663 -18.88338 -17.70870 -17.15797 -16.73254 -16.29107 -16.07400 -15.84720 -15.65497 -14.57798 -14.36456 -14.05437 -13.83178 -13.67740 -13.27482 -13.04748 -13.01869 -12.85878 -12.39829 -12.32072 -12.25313 -12.17349 -11.88108 -11.50858 -11.23102 -10.75176 -9.91557 -9.40866 -8.70207 -7.44891 -0.24194 0.41875 0.49413 1.33152 1.34194 1.51941 2.19287 2.61420 2.75184 3.17897 3.63956 3.64792 3.85056 4.00681 4.06219 4.09537 4.48514 4.49913 4.58951 4.72977 4.83386 4.88570 4.93363 5.12879 5.27091 5.27904 5.41410 5.55465 5.63058 5.88738 6.04957 6.81370 8.26108 Molecular weight = 240.06amu Principal moments of inertia in cm(-1) A = 0.061833 B = 0.006169 C = 0.006143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.724991 B = 4537.392014 C = 4557.059924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.090 4.090 3 C -0.126 4.126 4 C -0.126 4.126 5 C -0.116 4.116 6 C -0.558 4.558 7 S 2.511 3.489 8 O -1.021 7.021 9 O -1.021 7.021 10 C -1.036 5.036 11 H 0.124 0.876 12 C 0.065 3.935 13 N -0.887 5.887 14 Si 0.990 3.010 15 H -0.243 1.243 16 H -0.260 1.260 17 H -0.260 1.260 18 C -0.126 4.126 19 C -0.126 4.126 20 H 0.087 0.913 21 H 0.077 0.923 22 H 0.077 0.923 23 H 0.153 0.847 24 H 0.132 0.868 25 H 0.154 0.846 26 H 0.154 0.846 27 H 0.295 0.705 28 H 0.132 0.868 29 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.058 0.019 -10.462 14.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.091 4.091 3 C -0.143 4.143 4 C -0.145 4.145 5 C -0.117 4.117 6 C -0.686 4.686 7 S 2.703 3.297 8 O -1.018 7.018 9 O -1.018 7.018 10 C -1.168 5.168 11 H 0.142 0.858 12 C -0.147 4.147 13 N -0.518 5.518 14 Si 0.808 3.192 15 H -0.165 1.165 16 H -0.185 1.185 17 H -0.185 1.185 18 C -0.145 4.145 19 C -0.143 4.143 20 H 0.106 0.894 21 H 0.096 0.904 22 H 0.096 0.904 23 H 0.170 0.830 24 H 0.150 0.850 25 H 0.172 0.828 26 H 0.172 0.828 27 H 0.105 0.895 28 H 0.150 0.850 29 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -10.571 0.016 -9.475 14.196 hybrid contribution 1.564 0.002 -0.323 1.597 sum -9.006 0.018 -9.798 13.309 Atomic orbital electron populations 1.20856 0.88151 1.03970 1.03623 1.20471 0.98280 0.92595 0.97729 1.21388 0.93103 0.99407 1.00450 1.21436 0.95893 0.97539 0.99588 1.19343 0.92284 0.95339 1.04769 1.29250 1.01078 1.13378 1.24899 1.03727 0.77256 0.72874 0.75870 1.93279 1.87312 1.47280 1.73920 1.93279 1.87307 1.47109 1.74090 1.30755 1.17660 1.66865 1.01544 0.85839 1.26088 1.07919 0.87763 0.92950 1.70082 1.40799 1.40978 0.99921 0.85112 0.74105 0.79300 0.80681 1.16517 1.18462 1.18452 1.21437 0.95896 0.97540 0.99596 1.21389 0.93101 0.99408 1.00450 0.89410 0.90402 0.90401 0.82969 0.84988 0.82801 0.82802 0.89527 0.84999 0.82972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.75 10.01 71.24 0.71 -1.04 15 2 C -0.09 -2.25 5.88 -19.86 -0.12 -2.37 15 3 C -0.13 -3.43 9.70 22.27 0.22 -3.22 15 4 C -0.13 -4.21 9.70 22.27 0.22 -4.00 15 5 C -0.12 -4.28 5.14 -19.87 -0.10 -4.38 15 6 C -0.56 -21.36 6.11 71.23 0.43 -20.93 15 7 S 2.51 136.02 4.46 -56.49 -0.25 135.77 15 8 O -1.02 -62.29 17.85 -127.65 -2.28 -64.57 15 9 O -1.02 -62.27 17.85 -127.65 -2.28 -64.55 15 10 C -1.04 -57.60 9.32 67.73 0.63 -56.97 15 11 H 0.12 5.97 7.81 -2.91 -0.02 5.95 15 12 C 0.07 3.73 5.46 84.65 0.46 4.19 15 13 N -0.89 -54.86 13.03 21.45 0.28 -54.58 15 14 Si 0.99 41.88 29.54 68.60 2.03 43.91 15 15 H -0.24 -9.36 7.11 99.48 0.71 -8.66 15 16 H -0.26 -10.44 7.11 99.48 0.71 -9.74 15 17 H -0.26 -10.44 7.11 99.48 0.71 -9.73 15 18 C -0.13 -4.22 9.70 22.27 0.22 -4.00 15 19 C -0.13 -3.44 9.70 22.27 0.22 -3.22 15 20 H 0.09 1.11 8.14 -2.39 -0.02 1.09 15 21 H 0.08 1.09 8.09 -2.39 -0.02 1.07 15 22 H 0.08 1.09 8.09 -2.39 -0.02 1.07 15 23 H 0.15 3.14 8.06 -2.91 -0.02 3.11 15 24 H 0.13 4.18 8.06 -2.91 -0.02 4.15 15 25 H 0.15 5.04 8.09 -2.39 -0.02 5.02 15 26 H 0.15 5.04 8.09 -2.39 -0.02 5.02 15 27 H 0.29 16.35 8.31 -92.71 -0.77 15.58 15 28 H 0.13 4.18 8.06 -2.91 -0.02 4.16 15 29 H 0.15 3.14 8.06 -2.91 -0.02 3.12 15 Total: -1.00 -80.23 273.62 1.52 -78.71 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: 1.14 Total: 21.24 kcal Atomic # 6 Polarization: -98.81 SS G_CDS: 2.89 Total: -95.92 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: 0.28 Total: -54.58 kcal Atomic # 8 Polarization: -124.56 SS G_CDS: -4.56 Total: -129.12 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Atomic # 16 Polarization: 136.02 SS G_CDS: -0.25 Total: 135.77 kcal Total: -80.23 1.52 -78.71 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058254928.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.120 kcal (2) G-P(sol) polarization free energy of solvation -80.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds