Wall clock time and date at job start Mon Mar 30 2020 03:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 5 5 C 1.38236 * 119.99963 * 299.73020 * 4 2 1 6 6 C 1.38236 * 120.00036 * 179.81111 * 5 4 2 7 7 C 1.38226 * 119.99834 * 0.39071 * 6 5 4 8 8 C 1.38237 * 120.00085 * 359.86461 * 7 6 5 9 9 C 1.38229 * 120.00216 * 120.00264 * 4 2 1 10 10 S 1.81404 * 109.46960 * 119.99872 * 2 1 3 11 11 O 1.42098 * 110.53940 * 56.62374 * 10 2 1 12 12 O 1.42101 * 110.54264 * 193.37660 * 10 2 1 13 13 C 1.76196 * 104.44877 * 305.00383 * 10 2 1 14 14 H 1.08005 * 120.00289 * 359.97438 * 13 10 2 15 15 C 1.37875 * 119.99858 * 180.02562 * 13 10 2 16 16 N 1.31512 * 120.00491 * 359.97438 * 15 13 10 17 17 Si 1.86808 * 120.00021 * 179.97438 * 15 13 10 18 18 H 1.48504 * 109.46967 * 359.97438 * 17 15 13 19 19 H 1.48491 * 109.47501 * 119.99729 * 17 15 13 20 20 H 1.48508 * 109.46873 * 239.99812 * 17 15 13 21 21 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 23 23 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 24 24 H 1.08010 * 119.99941 * 359.97438 * 5 4 2 25 25 H 1.08001 * 119.99466 * 180.23187 * 6 5 4 26 26 H 1.08005 * 120.00406 * 179.83264 * 7 6 5 27 27 H 1.07998 * 120.00065 * 179.97438 * 8 7 6 28 28 H 1.08002 * 120.00084 * 359.97438 * 9 4 2 29 29 H 0.96993 * 120.00566 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 6 1.7031 -2.0355 -1.4464 6 6 2.1607 -2.6860 -2.5770 7 6 2.9543 -2.0139 -3.4875 8 6 3.2880 -0.6903 -3.2690 9 6 2.8272 -0.0387 -2.1403 10 16 2.1347 -0.8551 1.4812 11 8 1.6106 -2.1745 1.5440 12 8 3.5214 -0.6078 1.6686 13 6 1.3584 -0.0151 2.8215 14 1 0.6927 0.8129 2.6270 15 6 1.6016 -0.4140 4.1186 16 7 2.4126 -1.4218 4.3556 17 14 0.7792 0.4770 5.5397 18 1 -0.0793 1.5669 5.0101 19 1 -0.0546 -0.4812 6.3087 20 1 1.8184 1.0542 6.4298 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.0861 -2.5618 -0.7330 25 1 1.9003 -3.7202 -2.7475 26 1 3.3141 -2.5228 -4.3696 27 1 3.9083 -0.1652 -3.9802 28 1 3.0878 0.9954 -1.9696 29 1 2.5835 -1.7027 5.2681 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058254984.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:10 Heat of formation + Delta-G solvation = -69.398885 kcal Electronic energy + Delta-G solvation = -15213.660947 eV Core-core repulsion = 12614.224258 eV Total energy + Delta-G solvation = -2599.436689 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.061 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.07277 -35.11736 -34.04254 -33.89272 -33.00078 -30.66808 -29.15609 -26.04683 -23.85651 -22.33000 -20.91445 -18.64641 -16.74146 -16.55670 -15.88111 -15.14893 -14.93500 -14.18335 -13.97097 -13.87762 -13.34736 -13.06576 -12.67673 -12.17464 -11.99766 -11.80439 -11.40424 -11.21186 -11.05988 -10.90268 -10.63345 -10.55601 -10.20785 -10.14234 -9.48857 -9.20303 -8.71001 -8.68532 -8.27411 -6.64386 -5.27619 1.44303 1.62934 2.01295 3.07567 3.15001 3.21361 4.02010 4.05586 4.67932 4.70980 5.01890 5.18254 5.29790 5.37206 5.53030 5.65194 5.72380 5.77886 5.85132 6.02106 6.22465 6.25572 6.33268 6.48194 6.65884 6.71067 6.78045 6.88344 7.22591 7.34259 7.95602 8.92500 10.30025 Molecular weight = 240.06amu Principal moments of inertia in cm(-1) A = 0.049449 B = 0.007578 C = 0.007384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.100096 B = 3693.993423 C = 3791.054801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.562 4.562 3 H 0.128 0.872 4 C -0.065 4.065 5 C -0.123 4.123 6 C -0.116 4.116 7 C -0.128 4.128 8 C -0.124 4.124 9 C -0.110 4.110 10 S 2.533 3.467 11 O -0.971 6.971 12 O -0.976 6.976 13 C -1.007 5.007 14 H 0.102 0.898 15 C 0.134 3.866 16 N -0.834 5.834 17 Si 0.918 3.082 18 H -0.262 1.262 19 H -0.271 1.271 20 H -0.271 1.271 21 H 0.069 0.931 22 H 0.079 0.921 23 H 0.057 0.943 24 H 0.144 0.856 25 H 0.124 0.876 26 H 0.120 0.880 27 H 0.121 0.879 28 H 0.123 0.877 29 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.455 2.035 -10.679 11.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.663 4.663 3 H 0.146 0.854 4 C -0.066 4.066 5 C -0.141 4.141 6 C -0.134 4.134 7 C -0.146 4.146 8 C -0.142 4.142 9 C -0.129 4.129 10 S 2.716 3.284 11 O -0.968 6.968 12 O -0.973 6.973 13 C -1.140 5.140 14 H 0.120 0.880 15 C -0.084 4.084 16 N -0.463 5.463 17 Si 0.742 3.258 18 H -0.186 1.186 19 H -0.196 1.196 20 H -0.196 1.196 21 H 0.088 0.912 22 H 0.098 0.902 23 H 0.077 0.923 24 H 0.161 0.839 25 H 0.142 0.858 26 H 0.138 0.862 27 H 0.139 0.861 28 H 0.141 0.859 29 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.779 1.210 -10.589 10.806 hybrid contribution -0.803 1.197 0.664 1.587 sum -2.581 2.408 -9.925 10.534 Atomic orbital electron populations 1.21501 0.89930 1.03567 1.03083 1.29566 1.06612 1.13123 1.17041 0.85353 1.19303 0.97922 0.94090 0.95240 1.21537 1.00219 0.94147 0.98223 1.21130 0.98071 0.99884 0.94332 1.21137 0.99051 0.94901 0.99528 1.21088 1.00365 0.95091 0.97617 1.21106 0.97613 1.00066 0.94090 1.03730 0.74894 0.75289 0.74475 1.93322 1.81095 1.36927 1.85419 1.93348 1.33516 1.86462 1.84021 1.30231 1.44084 1.31760 1.07893 0.88000 1.24727 0.91657 0.92670 0.99379 1.69953 1.29728 1.22784 1.23859 0.86174 0.79583 0.79927 0.80109 1.18559 1.19593 1.19634 0.91176 0.90194 0.92348 0.83865 0.85769 0.86215 0.86089 0.85860 0.90153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.12 8.81 37.16 0.33 -1.79 15 2 C -0.56 -11.06 3.11 -27.88 -0.09 -11.15 15 3 H 0.13 2.26 7.88 -51.92 -0.41 1.85 15 4 C -0.06 -1.21 4.78 -104.63 -0.50 -1.71 15 5 C -0.12 -2.24 8.56 -39.58 -0.34 -2.58 15 6 C -0.12 -1.76 10.05 -39.59 -0.40 -2.16 15 7 C -0.13 -1.74 10.05 -39.59 -0.40 -2.14 15 8 C -0.12 -1.73 10.05 -39.58 -0.40 -2.13 15 9 C -0.11 -1.79 9.67 -39.59 -0.38 -2.17 15 10 S 2.53 66.46 3.81 -107.50 -0.41 66.05 15 11 O -0.97 -27.41 16.21 -57.54 -0.93 -28.35 15 12 O -0.98 -29.06 17.85 -57.54 -1.03 -30.09 15 13 C -1.01 -27.27 8.70 30.60 0.27 -27.01 15 14 H 0.10 2.46 6.80 -52.48 -0.36 2.10 15 15 C 0.13 3.73 5.46 -17.82 -0.10 3.64 15 16 N -0.83 -24.72 13.03 55.43 0.72 -24.00 15 17 Si 0.92 20.41 29.54 -169.99 -5.02 15.39 15 18 H -0.26 -5.54 7.11 56.52 0.40 -5.14 15 19 H -0.27 -5.81 7.11 56.52 0.40 -5.40 15 20 H -0.27 -5.84 7.11 56.52 0.40 -5.44 15 21 H 0.07 1.20 7.40 -51.93 -0.38 0.82 15 22 H 0.08 1.34 6.68 -51.93 -0.35 0.99 15 23 H 0.06 0.85 8.14 -51.93 -0.42 0.42 15 24 H 0.14 2.71 6.35 -52.48 -0.33 2.38 15 25 H 0.12 1.54 8.06 -52.49 -0.42 1.12 15 26 H 0.12 1.24 8.06 -52.48 -0.42 0.82 15 27 H 0.12 1.31 8.06 -52.49 -0.42 0.89 15 28 H 0.12 1.75 7.95 -52.49 -0.42 1.33 15 29 H 0.29 7.65 8.31 -40.82 -0.34 7.31 15 LS Contribution 264.68 15.07 3.99 3.99 Total: -1.00 -34.41 264.68 -7.76 -42.17 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -3.07 Total: 4.04 kcal Atomic # 6 Polarization: -47.19 SS G_CDS: -2.01 Total: -49.20 kcal Atomic # 7 Polarization: -24.72 SS G_CDS: 0.72 Total: -24.00 kcal Atomic # 8 Polarization: -56.48 SS G_CDS: -1.96 Total: -58.44 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 16 Polarization: 66.46 SS G_CDS: -0.41 Total: 66.05 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -34.41 -7.76 -42.17 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058254984.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.231 kcal (2) G-P(sol) polarization free energy of solvation -34.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds