Wall clock time and date at job start Mon Mar 30 2020 04:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00484 * 2 1 4 4 H 1.48497 * 109.47037 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46882 * 300.00158 * 3 2 1 6 6 H 1.48500 * 109.46940 * 60.00006 * 3 2 1 7 7 C 1.37882 * 119.99430 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99872 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00324 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47297 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46976 * 179.97438 * 10 9 7 12 12 S 1.81002 * 109.47085 * 180.02562 * 11 10 9 13 13 C 1.76199 * 100.00182 * 180.02562 * 12 11 10 14 14 N 1.33194 * 120.04976 * 0.02562 * 13 12 11 15 15 C 1.32105 * 120.07930 * 180.02562 * 14 13 12 16 16 N 1.32186 * 120.18527 * 0.02562 * 15 14 13 17 17 C 1.33112 * 120.09985 * 359.97438 * 16 15 14 18 18 N 1.38006 * 120.04511 * 180.02562 * 17 16 15 19 19 N 1.32847 * 119.91942 * 359.72829 * 17 16 15 20 20 H 0.96995 * 119.99465 * 359.97438 * 1 2 3 21 21 H 1.09005 * 109.46836 * 60.00337 * 9 7 2 22 22 H 1.08996 * 109.47837 * 300.00760 * 9 7 2 23 23 H 1.09001 * 109.46310 * 60.00540 * 10 9 7 24 24 H 1.08996 * 109.46979 * 300.00321 * 10 9 7 25 25 H 1.09005 * 109.46968 * 60.00604 * 11 10 9 26 26 H 1.09000 * 109.47398 * 300.00482 * 11 10 9 27 27 H 1.07998 * 119.90822 * 180.02562 * 15 14 13 28 28 H 0.97008 * 119.99552 * 359.97438 * 18 17 16 29 29 H 0.96992 * 120.00555 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3461 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0018 11 6 1.4800 -4.9871 -0.0012 12 16 2.6561 -6.3630 -0.0019 13 6 1.5359 -7.7231 -0.0018 14 7 0.2220 -7.5050 -0.0018 15 6 -0.6184 -8.5243 -0.0012 16 7 -0.1596 -9.7639 -0.0001 17 6 1.1522 -9.9903 -0.0001 18 7 1.6300 -11.2850 0.0005 19 7 2.0009 -8.9683 -0.0067 20 1 -0.4849 0.8400 0.0004 21 1 0.6240 -2.5567 -0.8904 22 1 0.6245 -2.5571 0.8895 23 1 2.8724 -3.6048 0.8878 24 1 2.8711 -3.6041 -0.8922 25 1 0.8524 -5.0447 -0.8906 26 1 0.8543 -5.0450 0.8894 27 1 -1.6832 -8.3442 -0.0015 28 1 1.0097 -12.0308 0.0013 29 1 2.5859 -11.4492 0.0008 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000059357882.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:18 Heat of formation + Delta-G solvation = 28.816362 kcal Electronic energy + Delta-G solvation = -13846.886191 eV Core-core repulsion = 11316.293938 eV Total energy + Delta-G solvation = -2530.592254 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.074 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.46764 -36.86533 -36.34685 -34.86876 -34.05766 -32.74642 -29.44022 -26.78553 -25.36575 -25.17765 -22.17249 -20.12845 -19.94828 -18.49341 -17.36089 -16.92532 -16.89355 -16.55159 -16.12345 -15.88981 -15.19634 -15.05232 -14.43021 -13.77695 -13.67345 -13.21340 -12.87152 -12.76170 -12.40274 -12.36605 -11.88672 -11.62629 -11.28811 -11.10650 -10.82379 -10.63162 -10.53169 -10.05439 -9.07072 -8.17472 -6.28046 -0.35665 0.03480 0.07518 1.05010 1.43302 1.43891 1.57053 1.98940 2.44096 2.70671 2.89235 3.16321 3.25516 3.97525 4.06325 4.09466 4.59500 4.83949 4.96744 5.04873 5.17884 5.29624 5.40057 5.53643 5.72368 5.86668 6.03181 6.25331 6.46334 6.88532 7.26536 7.40993 8.94414 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.069527 B = 0.003955 C = 0.003755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.624293 B = 7078.554934 C = 7455.428979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.001 4.001 3 Si 0.965 3.035 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.541 4.541 8 H 0.063 0.937 9 C 0.032 3.968 10 C -0.085 4.085 11 C -0.090 4.090 12 S 0.031 5.969 13 C 0.359 3.641 14 N -0.618 5.618 15 C 0.388 3.612 16 N -0.621 5.621 17 C 0.592 3.408 18 N -0.781 5.781 19 N -0.608 5.608 20 H 0.263 0.737 21 H -0.003 1.003 22 H -0.002 1.002 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.243 0.757 28 H 0.430 0.570 29 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.279 -20.747 0.017 20.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.199 4.199 3 Si 0.790 3.210 4 H -0.185 1.185 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.580 4.580 8 H 0.081 0.919 9 C -0.007 4.007 10 C -0.125 4.125 11 C -0.239 4.239 12 S 0.266 5.734 13 C -0.025 4.025 14 N -0.347 5.347 15 C 0.089 3.911 16 N -0.354 5.354 17 C 0.222 3.778 18 N -0.332 5.332 19 N -0.343 5.343 20 H 0.072 0.928 21 H 0.016 0.984 22 H 0.016 0.984 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.108 0.892 26 H 0.108 0.892 27 H 0.259 0.741 28 H 0.264 0.736 29 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 3.396 -20.672 0.009 20.949 hybrid contribution -1.247 0.466 0.003 1.331 sum 2.149 -20.206 0.012 20.320 Atomic orbital electron populations 1.70103 1.07736 1.27674 1.51715 1.25969 0.95775 1.03320 0.94822 0.85398 0.79146 0.78832 0.77669 1.18515 1.20511 1.20499 1.21711 0.93700 0.92149 1.50396 0.91897 1.18961 0.94148 0.92133 0.95502 1.21273 0.98246 0.90858 1.02116 1.23635 0.99596 0.93939 1.06685 1.85803 1.07682 0.92032 1.87923 1.25390 0.93170 0.95443 0.88506 1.69560 1.02755 1.37572 1.24854 1.25901 1.01992 0.81547 0.81677 1.68748 1.13905 1.26023 1.26687 1.19784 0.85646 0.88216 0.84171 1.41708 1.12476 1.00863 1.78155 1.68686 1.39391 0.98716 1.27489 0.92808 0.98418 0.98407 0.91665 0.91657 0.89201 0.89200 0.74072 0.73555 0.73916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.26 13.29 21.45 0.28 -55.98 15 2 C 0.00 -0.06 5.46 84.66 0.46 0.40 15 3 Si 0.96 43.94 29.54 68.60 2.03 45.97 15 4 H -0.26 -11.32 7.11 99.48 0.71 -10.61 15 5 H -0.28 -12.43 7.11 99.48 0.71 -11.73 15 6 H -0.28 -12.43 7.11 99.48 0.71 -11.72 15 7 C -0.54 -30.34 9.11 25.60 0.23 -30.11 15 8 H 0.06 3.37 7.74 -2.91 -0.02 3.35 15 9 C 0.03 1.63 4.97 29.85 0.15 1.78 15 10 C -0.09 -3.40 5.16 30.60 0.16 -3.25 15 11 C -0.09 -3.08 4.85 71.98 0.35 -2.73 15 12 S 0.03 0.94 22.27 -56.49 -1.26 -0.32 15 13 C 0.36 11.10 7.90 180.12 1.42 12.52 15 14 N -0.62 -18.26 9.31 -200.68 -1.87 -20.13 15 15 C 0.39 9.17 12.40 180.67 2.24 11.41 15 16 N -0.62 -14.66 10.53 -202.56 -2.13 -16.79 15 17 C 0.59 14.01 8.76 261.25 2.29 16.30 15 18 N -0.78 -10.59 9.05 -59.46 -0.54 -11.13 15 19 N -0.61 -17.31 10.53 -198.70 -2.09 -19.40 15 20 H 0.26 14.90 8.31 -92.71 -0.77 14.13 15 21 H 0.00 -0.14 8.14 -2.38 -0.02 -0.16 15 22 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 15 23 H 0.06 2.51 8.14 -2.39 -0.02 2.49 15 24 H 0.06 2.52 8.14 -2.39 -0.02 2.50 15 25 H 0.09 3.15 8.13 -2.39 -0.02 3.13 15 26 H 0.09 3.15 8.13 -2.40 -0.02 3.13 15 27 H 0.24 3.59 8.06 -2.91 -0.02 3.56 15 28 H 0.43 3.66 8.95 -92.70 -0.83 2.83 15 29 H 0.43 4.25 8.95 -92.71 -0.83 3.42 15 Total: -1.00 -68.53 275.27 1.25 -67.28 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -0.47 Total: 4.17 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: 7.30 Total: 6.33 kcal Atomic # 7 Polarization: -117.08 SS G_CDS: -6.35 Total: -123.43 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -1.26 Total: -0.32 kcal Total: -68.53 1.25 -67.28 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059357882.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.093 kcal (2) G-P(sol) polarization free energy of solvation -68.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds