Wall clock time and date at job start Mon Mar 30 2020 03:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.81402 * 109.46845 * 2 1 4 4 O 1.42096 * 110.54454 * 68.37642 * 3 2 1 5 5 O 1.42102 * 110.54243 * 291.62498 * 3 2 1 6 6 C 1.76197 * 104.44802 * 180.02562 * 3 2 1 7 7 C 1.38642 * 119.75208 * 269.72933 * 6 3 2 8 8 C 1.37610 * 120.25148 * 179.72383 * 7 6 3 9 9 C 1.40713 * 119.74570 * 0.56696 * 8 7 6 10 10 C 1.41395 * 120.24676 * 179.68436 * 9 8 7 11 11 H 1.08001 * 120.00053 * 204.40090 * 10 9 8 12 12 C 1.39944 * 119.99961 * 24.40833 * 10 9 8 13 13 N 1.30829 * 119.99974 * 17.84376 * 12 10 9 14 14 Si 1.86807 * 120.00153 * 197.84753 * 12 10 9 15 15 H 1.48504 * 109.46934 * 89.99785 * 14 12 10 16 16 H 1.48499 * 109.46984 * 209.99596 * 14 12 10 17 17 H 1.48494 * 109.46860 * 329.99792 * 14 12 10 18 18 C 1.40716 * 119.51110 * 359.70621 * 9 8 7 19 19 C 1.37621 * 119.74679 * 359.97438 * 18 9 8 20 20 H 1.09003 * 109.47482 * 59.99975 * 1 2 3 21 21 H 1.09005 * 109.47065 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47353 * 299.99904 * 1 2 3 23 23 H 1.08997 * 109.47116 * 240.00586 * 2 1 3 24 24 H 1.08995 * 109.47380 * 119.99783 * 2 1 3 25 25 H 1.08010 * 119.86659 * 359.97438 * 7 6 3 26 26 H 1.08007 * 120.12641 * 180.27941 * 8 7 6 27 27 H 0.96998 * 119.99826 * 179.97438 * 13 12 10 28 28 H 1.08000 * 120.12876 * 179.97438 * 18 9 8 29 29 H 1.07994 * 119.87820 * 179.97438 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.8385 2.3439 1.2369 5 8 1.8384 2.3439 -1.2370 6 6 3.8898 1.5561 -0.0008 7 6 4.5762 1.5014 1.2026 8 6 5.9464 1.3753 1.2140 9 6 6.6520 1.3139 -0.0019 10 6 8.0607 1.1911 -0.0025 11 1 8.6318 1.5293 -0.8544 12 6 8.7147 0.6313 1.1008 13 7 8.0432 -0.0863 1.9644 14 14 10.5464 0.9086 1.3405 15 1 10.7596 2.1350 2.1504 16 1 11.1357 -0.2584 2.0449 17 1 11.2000 1.0697 0.0169 18 6 5.9455 1.3761 -1.2172 19 6 4.5746 1.4956 -1.2047 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.8933 -0.5137 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 4.0328 1.5539 2.1346 26 1 6.4787 1.3283 2.1527 27 1 8.4967 -0.4747 2.7289 28 1 6.4771 1.3303 -2.1562 29 1 4.0303 1.5439 -2.1362 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063046440.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:10 Heat of formation + Delta-G solvation = -88.593599 kcal Electronic energy + Delta-G solvation = -14792.961065 eV Core-core repulsion = 12192.692031 eV Total energy + Delta-G solvation = -2600.269034 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.061 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -39.37097 -37.90256 -36.77062 -35.78960 -33.93226 -32.06331 -31.27536 -27.65004 -24.81477 -23.18948 -22.89659 -19.71388 -19.39618 -18.37318 -17.30151 -16.99985 -16.77780 -15.81211 -15.42475 -14.96499 -14.94053 -14.18500 -14.02490 -13.90394 -13.56465 -13.28594 -13.03519 -12.94081 -12.86460 -12.80184 -12.58159 -12.32843 -11.95518 -11.58911 -11.46961 -11.23251 -11.01777 -9.75715 -9.54134 -8.86745 -6.64098 -0.56222 0.51820 1.05676 1.35491 1.44076 1.50315 2.11557 2.30915 2.46374 3.12568 3.42973 3.56753 3.85807 4.03490 4.34156 4.35867 4.45997 4.77949 4.87918 4.91636 4.96367 5.13104 5.14171 5.25586 5.53698 5.60650 5.77889 5.94047 6.16643 6.50011 6.69129 6.81940 8.08651 Molecular weight = 240.06amu Principal moments of inertia in cm(-1) A = 0.052927 B = 0.006035 C = 0.005833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.908404 B = 4638.149724 C = 4799.305608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.591 4.591 3 S 2.517 3.483 4 O -0.991 6.991 5 O -0.987 6.987 6 C -0.783 4.783 7 C -0.027 4.027 8 C -0.211 4.211 9 C 0.108 3.892 10 C -0.471 4.471 11 H 0.090 0.910 12 C 0.035 3.965 13 N -0.797 5.797 14 Si 0.991 3.009 15 H -0.261 1.261 16 H -0.262 1.262 17 H -0.254 1.254 18 C -0.260 4.260 19 C -0.008 4.008 20 H 0.076 0.924 21 H 0.106 0.894 22 H 0.073 0.927 23 H 0.150 0.850 24 H 0.146 0.854 25 H 0.119 0.881 26 H 0.111 0.889 27 H 0.298 0.702 28 H 0.111 0.889 29 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.927 -3.590 -1.015 7.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.723 4.723 3 S 2.703 3.297 4 O -0.988 6.988 5 O -0.984 6.984 6 C -0.874 4.874 7 C -0.046 4.046 8 C -0.231 4.231 9 C 0.105 3.895 10 C -0.497 4.497 11 H 0.108 0.892 12 C -0.184 4.184 13 N -0.420 5.420 14 Si 0.811 3.189 15 H -0.186 1.186 16 H -0.187 1.187 17 H -0.178 1.178 18 C -0.280 4.280 19 C -0.027 4.027 20 H 0.095 0.905 21 H 0.125 0.875 22 H 0.092 0.908 23 H 0.168 0.832 24 H 0.164 0.836 25 H 0.136 0.864 26 H 0.128 0.872 27 H 0.109 0.891 28 H 0.129 0.871 29 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.394 -2.963 -0.801 7.093 hybrid contribution 1.522 -0.561 0.241 1.640 sum -4.871 -3.525 -0.560 6.039 Atomic orbital electron populations 1.21740 0.89445 1.06576 1.03867 1.30061 1.07435 1.21320 1.13530 1.04304 0.73887 0.78765 0.72694 1.93430 1.84777 1.74667 1.45918 1.93430 1.84755 1.74575 1.45668 1.29496 1.23521 1.35559 0.98836 1.20548 0.94704 0.93566 0.95820 1.21382 0.93787 1.09573 0.98332 1.18216 0.94059 0.85173 0.92060 1.20216 0.92272 1.34082 1.03177 0.89216 1.26990 1.06543 0.91386 0.93530 1.69843 1.41232 1.20378 1.10571 0.85050 0.74664 0.79249 0.79960 1.18601 1.18654 1.17757 1.21315 0.94332 1.15194 0.97189 1.20547 0.94470 0.91789 0.95900 0.90530 0.87494 0.90770 0.83170 0.83582 0.86352 0.87160 0.89067 0.87118 0.85172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.01 9.92 71.98 0.71 -2.29 15 2 C -0.59 -14.06 6.70 71.98 0.48 -13.58 15 3 S 2.52 88.65 5.15 -56.49 -0.29 88.36 15 4 O -0.99 -40.32 17.10 -127.65 -2.18 -42.51 15 5 O -0.99 -39.03 17.10 -127.65 -2.18 -41.21 15 6 C -0.78 -33.99 5.68 22.46 0.13 -33.87 15 7 C -0.03 -1.27 9.44 22.22 0.21 -1.06 15 8 C -0.21 -10.97 8.70 22.73 0.20 -10.77 15 9 C 0.11 5.70 5.57 -21.29 -0.12 5.59 15 10 C -0.47 -23.91 9.05 23.46 0.21 -23.70 15 11 H 0.09 4.32 7.91 -2.91 -0.02 4.30 15 12 C 0.03 1.62 5.14 85.26 0.44 2.06 15 13 N -0.80 -38.59 10.95 21.83 0.24 -38.35 15 14 Si 0.99 34.96 29.60 68.60 2.03 36.99 15 15 H -0.26 -9.08 7.11 99.48 0.71 -8.37 15 16 H -0.26 -8.68 7.11 99.48 0.71 -7.97 15 17 H -0.25 -8.70 7.11 99.48 0.71 -7.99 15 18 C -0.26 -12.59 9.80 22.73 0.22 -12.37 15 19 C -0.01 -0.35 9.44 22.22 0.21 -0.14 15 20 H 0.08 1.37 8.14 -2.39 -0.02 1.35 15 21 H 0.11 1.47 8.14 -2.38 -0.02 1.45 15 22 H 0.07 1.37 8.14 -2.39 -0.02 1.35 15 23 H 0.15 3.07 8.14 -2.39 -0.02 3.05 15 24 H 0.15 3.14 8.14 -2.39 -0.02 3.12 15 25 H 0.12 5.09 7.55 -2.91 -0.02 5.07 15 26 H 0.11 5.87 6.16 -2.91 -0.02 5.85 15 27 H 0.30 12.79 8.30 -92.71 -0.77 12.02 15 28 H 0.11 4.92 8.06 -2.91 -0.02 4.90 15 29 H 0.13 5.01 7.55 -2.91 -0.02 4.99 15 Total: -1.00 -65.19 266.89 1.45 -63.74 By element: Atomic # 1 Polarization: 21.97 SS G_CDS: 1.15 Total: 23.12 kcal Atomic # 6 Polarization: -92.82 SS G_CDS: 2.70 Total: -90.13 kcal Atomic # 7 Polarization: -38.59 SS G_CDS: 0.24 Total: -38.35 kcal Atomic # 8 Polarization: -79.35 SS G_CDS: -4.37 Total: -83.72 kcal Atomic # 14 Polarization: 34.96 SS G_CDS: 2.03 Total: 36.99 kcal Atomic # 16 Polarization: 88.65 SS G_CDS: -0.29 Total: 88.36 kcal Total: -65.19 1.45 -63.74 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063046440.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.856 kcal (2) G-P(sol) polarization free energy of solvation -65.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds