Wall clock time and date at job start Mon Mar 30 2020 03:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 S 1.81405 * 109.46993 * 2 1 4 4 O 1.42096 * 110.54287 * 291.62542 * 3 2 1 5 5 O 1.42098 * 110.54174 * 68.37615 * 3 2 1 6 6 C 1.76201 * 104.44740 * 179.97438 * 3 2 1 7 7 C 1.37641 * 120.12646 * 115.00166 * 6 3 2 8 8 C 1.38613 * 120.24683 * 179.97438 * 7 6 3 9 9 C 1.38652 * 120.50271 * 0.02811 * 8 7 6 10 10 C 1.37599 * 120.24758 * 0.02562 * 9 8 7 11 11 C 1.40694 * 120.12734 * 294.72338 * 6 3 2 12 12 C 1.41391 * 120.24595 * 359.97438 * 11 6 3 13 13 H 1.08005 * 120.00413 * 332.92732 * 12 11 6 14 14 C 1.39951 * 120.00095 * 152.92584 * 12 11 6 15 15 N 1.30819 * 119.99691 * 344.17876 * 14 12 11 16 16 Si 1.86796 * 120.00049 * 164.17616 * 14 12 11 17 17 H 1.48496 * 109.47236 * 60.00157 * 16 14 12 18 18 H 1.48499 * 109.47255 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47037 * 300.00080 * 16 14 12 20 20 H 1.08996 * 109.47288 * 300.00027 * 1 2 3 21 21 H 1.08997 * 109.47500 * 60.00291 * 1 2 3 22 22 H 1.09004 * 109.46942 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47500 * 119.99709 * 2 1 3 24 24 H 1.08996 * 109.47288 * 239.99973 * 2 1 3 25 25 H 1.07997 * 119.87317 * 0.02562 * 7 6 3 26 26 H 1.08000 * 119.74529 * 179.97438 * 8 7 6 27 27 H 1.08001 * 119.87662 * 179.97438 * 9 8 7 28 28 H 1.08007 * 120.12426 * 179.97438 * 10 9 8 29 29 H 0.97002 * 119.99950 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.8384 2.3439 -1.2369 5 8 1.8385 2.3438 1.2370 6 6 3.8898 1.5561 0.0008 7 6 4.6225 1.9966 -1.0779 8 6 6.0035 1.8770 -1.0797 9 6 6.6624 1.3129 0.0020 10 6 5.9502 0.8647 1.0906 11 6 4.5483 0.9874 1.1065 12 6 3.8065 0.5372 2.2229 13 1 2.8513 0.9855 2.4530 14 6 4.3102 -0.4894 3.0298 15 7 5.2913 -1.2392 2.5978 16 14 3.5817 -0.7888 4.7235 17 1 2.1383 -1.1117 4.5915 18 1 4.2861 -1.9240 5.3718 19 1 3.7419 0.4317 5.5541 20 1 -0.3634 0.5138 0.8899 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5138 0.8900 24 1 1.8933 -0.5138 -0.8899 25 1 4.1196 2.4379 -1.9257 26 1 6.5703 2.2250 -1.9306 27 1 7.7387 1.2243 -0.0103 28 1 6.4655 0.4252 1.9319 29 1 5.6401 -1.9510 3.1569 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063046455.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:16 Heat of formation + Delta-G solvation = -66.135426 kcal Electronic energy + Delta-G solvation = -15451.912016 eV Core-core repulsion = 12852.616841 eV Total energy + Delta-G solvation = -2599.295175 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.061 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -37.61729 -36.13326 -34.94675 -33.97142 -32.59285 -30.28980 -29.55109 -25.55330 -23.57799 -21.42324 -21.16055 -17.95115 -17.72460 -16.34768 -15.52486 -15.32987 -15.07807 -14.36303 -13.82504 -13.35768 -13.15261 -12.81331 -12.71811 -12.05158 -11.87644 -11.59491 -11.28806 -11.22897 -11.11032 -11.06793 -11.02034 -10.61805 -10.54463 -9.90203 -9.78079 -9.46416 -9.08544 -8.01708 -7.64655 -7.12451 -4.82978 1.17638 2.35243 2.71934 2.93155 2.97596 3.10288 3.72655 4.08114 4.32808 4.67243 5.04325 5.22335 5.35491 5.54031 5.60430 6.02956 6.08670 6.16420 6.24084 6.38563 6.42660 6.75143 6.96110 7.06730 7.31633 7.50445 7.65672 7.80156 7.91157 8.31349 8.45850 8.63246 9.80840 Molecular weight = 240.06amu Principal moments of inertia in cm(-1) A = 0.019718 B = 0.013734 C = 0.009068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.709238 B = 2038.277245 C = 3087.136693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.616 4.616 3 S 2.510 3.490 4 O -0.978 6.978 5 O -0.953 6.953 6 C -0.760 4.760 7 C -0.002 4.002 8 C -0.250 4.250 9 C -0.076 4.076 10 C -0.161 4.161 11 C 0.186 3.814 12 C -0.481 4.481 13 H 0.113 0.887 14 C 0.080 3.920 15 N -0.775 5.775 16 Si 0.911 3.089 17 H -0.258 1.258 18 H -0.275 1.275 19 H -0.256 1.256 20 H 0.068 0.932 21 H 0.064 0.936 22 H 0.073 0.927 23 H 0.146 0.854 24 H 0.124 0.876 25 H 0.111 0.889 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.123 0.877 29 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.502 -2.065 -0.907 4.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.744 4.744 3 S 2.696 3.304 4 O -0.975 6.975 5 O -0.950 6.950 6 C -0.855 4.855 7 C -0.021 4.021 8 C -0.270 4.270 9 C -0.095 4.095 10 C -0.181 4.181 11 C 0.182 3.818 12 C -0.509 4.509 13 H 0.131 0.869 14 C -0.142 4.142 15 N -0.397 5.397 16 Si 0.734 3.266 17 H -0.182 1.182 18 H -0.200 1.200 19 H -0.180 1.180 20 H 0.087 0.913 21 H 0.083 0.917 22 H 0.092 0.908 23 H 0.164 0.836 24 H 0.143 0.857 25 H 0.129 0.871 26 H 0.114 0.886 27 H 0.112 0.888 28 H 0.141 0.859 29 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.884 -1.531 -0.850 4.260 hybrid contribution 0.642 -1.060 0.695 1.421 sum -3.242 -2.590 -0.154 4.153 Atomic orbital electron populations 1.21503 0.92023 1.04059 1.02711 1.30164 1.05030 1.26835 1.12392 1.04315 0.75759 0.76719 0.73599 1.93415 1.85380 1.73201 1.45552 1.93464 1.85049 1.72283 1.44247 1.29426 1.21200 1.30533 1.04316 1.20279 0.94049 0.93102 0.94719 1.20513 0.94197 1.12118 1.00220 1.20905 0.97764 0.96546 0.94313 1.21483 0.94251 1.03679 0.98692 1.17048 0.92216 0.83966 0.88590 1.20445 1.07265 1.15208 1.07967 0.86907 1.26052 0.93848 0.94264 1.00017 1.69803 1.20162 1.12880 1.36885 0.86272 0.80425 0.79135 0.80741 1.18180 1.20003 1.18021 0.91322 0.91702 0.90785 0.83630 0.85749 0.87116 0.88646 0.88785 0.85938 0.90021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.92 37.15 0.37 -1.72 15 2 C -0.62 -10.78 6.50 37.15 0.24 -10.54 15 3 S 2.51 53.93 4.59 -107.50 -0.49 53.44 15 4 O -0.98 -22.04 16.74 -57.54 -0.96 -23.00 15 5 O -0.95 -22.78 15.64 -57.54 -0.90 -23.68 15 6 C -0.76 -18.30 5.63 -38.87 -0.22 -18.52 15 7 C 0.00 -0.05 9.49 -39.66 -0.38 -0.42 15 8 C -0.25 -5.54 10.05 -39.29 -0.39 -5.94 15 9 C -0.08 -1.73 10.02 -39.66 -0.40 -2.13 15 10 C -0.16 -4.01 8.68 -38.87 -0.34 -4.34 15 11 C 0.19 4.74 5.55 -106.83 -0.59 4.15 15 12 C -0.48 -11.91 6.83 -37.74 -0.26 -12.16 15 13 H 0.11 2.76 5.47 -52.48 -0.29 2.48 15 14 C 0.08 1.85 5.16 -17.34 -0.09 1.76 15 15 N -0.77 -18.10 10.99 55.55 0.61 -17.48 15 16 Si 0.91 17.47 29.59 -169.99 -5.03 12.44 15 17 H -0.26 -4.81 7.11 56.52 0.40 -4.41 15 18 H -0.28 -5.04 7.11 56.52 0.40 -4.64 15 19 H -0.26 -4.99 7.11 56.52 0.40 -4.59 15 20 H 0.07 0.95 8.14 -51.93 -0.42 0.53 15 21 H 0.06 0.85 8.14 -51.93 -0.42 0.43 15 22 H 0.07 0.89 8.14 -51.93 -0.42 0.47 15 23 H 0.15 2.65 6.77 -51.93 -0.35 2.30 15 24 H 0.12 1.97 8.14 -51.93 -0.42 1.54 15 25 H 0.11 2.36 7.20 -52.49 -0.38 1.98 15 26 H 0.10 1.83 8.06 -52.49 -0.42 1.41 15 27 H 0.09 1.84 8.06 -52.49 -0.42 1.42 15 28 H 0.12 3.04 6.26 -52.48 -0.33 2.72 15 29 H 0.29 6.08 8.30 -40.82 -0.34 5.74 15 LS Contribution 259.39 15.07 3.91 3.91 Total: -1.00 -28.95 259.39 -7.94 -36.89 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -3.02 Total: 7.37 kcal Atomic # 6 Polarization: -47.82 SS G_CDS: -2.05 Total: -49.87 kcal Atomic # 7 Polarization: -18.10 SS G_CDS: 0.61 Total: -17.48 kcal Atomic # 8 Polarization: -44.82 SS G_CDS: -1.86 Total: -46.69 kcal Atomic # 14 Polarization: 17.47 SS G_CDS: -5.03 Total: 12.44 kcal Atomic # 16 Polarization: 53.93 SS G_CDS: -0.49 Total: 53.44 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -28.95 -7.94 -36.89 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063046455.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.247 kcal (2) G-P(sol) polarization free energy of solvation -28.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds