Wall clock time and date at job start Mon Mar 30 2020 03:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 S 1.81405 * 109.46993 * 2 1 4 4 O 1.42096 * 110.54287 * 291.62542 * 3 2 1 5 5 O 1.42098 * 110.54174 * 68.37615 * 3 2 1 6 6 C 1.76201 * 104.44740 * 179.97438 * 3 2 1 7 7 C 1.37641 * 120.12646 * 115.00166 * 6 3 2 8 8 C 1.38613 * 120.24683 * 179.97438 * 7 6 3 9 9 C 1.38652 * 120.50271 * 0.02811 * 8 7 6 10 10 C 1.37599 * 120.24758 * 0.02562 * 9 8 7 11 11 C 1.40694 * 120.12734 * 294.72338 * 6 3 2 12 12 C 1.41391 * 120.24595 * 359.97438 * 11 6 3 13 13 H 1.08005 * 120.00413 * 332.92732 * 12 11 6 14 14 C 1.39951 * 120.00095 * 152.92584 * 12 11 6 15 15 N 1.30819 * 119.99691 * 344.17876 * 14 12 11 16 16 Si 1.86796 * 120.00049 * 164.17616 * 14 12 11 17 17 H 1.48496 * 109.47236 * 60.00157 * 16 14 12 18 18 H 1.48499 * 109.47255 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47037 * 300.00080 * 16 14 12 20 20 H 1.08996 * 109.47288 * 300.00027 * 1 2 3 21 21 H 1.08997 * 109.47500 * 60.00291 * 1 2 3 22 22 H 1.09004 * 109.46942 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47500 * 119.99709 * 2 1 3 24 24 H 1.08996 * 109.47288 * 239.99973 * 2 1 3 25 25 H 1.07997 * 119.87317 * 0.02562 * 7 6 3 26 26 H 1.08000 * 119.74529 * 179.97438 * 8 7 6 27 27 H 1.08001 * 119.87662 * 179.97438 * 9 8 7 28 28 H 1.08007 * 120.12426 * 179.97438 * 10 9 8 29 29 H 0.97002 * 119.99950 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.8384 2.3439 -1.2369 5 8 1.8385 2.3438 1.2370 6 6 3.8898 1.5561 0.0008 7 6 4.6225 1.9966 -1.0779 8 6 6.0035 1.8770 -1.0797 9 6 6.6624 1.3129 0.0020 10 6 5.9502 0.8647 1.0906 11 6 4.5483 0.9874 1.1065 12 6 3.8065 0.5372 2.2229 13 1 2.8513 0.9855 2.4530 14 6 4.3102 -0.4894 3.0298 15 7 5.2913 -1.2392 2.5978 16 14 3.5817 -0.7888 4.7235 17 1 2.1383 -1.1117 4.5915 18 1 4.2861 -1.9240 5.3718 19 1 3.7419 0.4317 5.5541 20 1 -0.3634 0.5138 0.8899 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5138 0.8900 24 1 1.8933 -0.5138 -0.8899 25 1 4.1196 2.4379 -1.9257 26 1 6.5703 2.2250 -1.9306 27 1 7.7387 1.2243 -0.0103 28 1 6.4655 0.4252 1.9319 29 1 5.6401 -1.9510 3.1569 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063046455.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:14 Heat of formation + Delta-G solvation = -84.500624 kcal Electronic energy + Delta-G solvation = -15452.708390 eV Core-core repulsion = 12852.616841 eV Total energy + Delta-G solvation = -2600.091549 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.061 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -39.39582 -37.88867 -36.71155 -35.72056 -33.90777 -32.06482 -31.34375 -27.34505 -24.93606 -23.14814 -22.94372 -19.66409 -19.50523 -18.06004 -17.20963 -16.97577 -16.72159 -16.03115 -15.34140 -15.01593 -14.87777 -14.45929 -14.07136 -13.72088 -13.31435 -13.23226 -12.99206 -12.91936 -12.84743 -12.77653 -12.35866 -12.25342 -12.15003 -11.65081 -11.34934 -11.16701 -10.84261 -9.80905 -9.47292 -8.84233 -6.65659 -0.45897 0.55731 0.96827 1.37990 1.48226 1.52856 2.15227 2.38649 2.58149 3.03074 3.44654 3.64292 3.90959 4.11106 4.34654 4.47327 4.50063 4.70512 4.81529 4.98156 4.99594 5.12970 5.16744 5.29188 5.53012 5.71240 5.83189 5.99817 6.11183 6.49488 6.66381 6.82601 8.12029 Molecular weight = 240.06amu Principal moments of inertia in cm(-1) A = 0.019718 B = 0.013734 C = 0.009068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.709238 B = 2038.277245 C = 3087.136693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.593 4.593 3 S 2.512 3.488 4 O -0.993 6.993 5 O -0.986 6.986 6 C -0.783 4.783 7 C -0.018 4.018 8 C -0.254 4.254 9 C -0.077 4.077 10 C -0.191 4.191 11 C 0.159 3.841 12 C -0.506 4.506 13 H 0.108 0.892 14 C 0.049 3.951 15 N -0.796 5.796 16 Si 0.968 3.032 17 H -0.247 1.247 18 H -0.259 1.259 19 H -0.264 1.264 20 H 0.071 0.929 21 H 0.078 0.922 22 H 0.106 0.894 23 H 0.141 0.859 24 H 0.144 0.856 25 H 0.124 0.876 26 H 0.127 0.873 27 H 0.123 0.877 28 H 0.113 0.887 29 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.196 -3.134 -1.050 5.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.725 4.725 3 S 2.700 3.300 4 O -0.991 6.991 5 O -0.983 6.983 6 C -0.876 4.876 7 C -0.037 4.037 8 C -0.274 4.274 9 C -0.095 4.095 10 C -0.211 4.211 11 C 0.155 3.845 12 C -0.533 4.533 13 H 0.125 0.875 14 C -0.171 4.171 15 N -0.419 5.419 16 Si 0.787 3.213 17 H -0.171 1.171 18 H -0.183 1.183 19 H -0.189 1.189 20 H 0.090 0.910 21 H 0.097 0.903 22 H 0.125 0.875 23 H 0.159 0.841 24 H 0.163 0.837 25 H 0.142 0.858 26 H 0.145 0.855 27 H 0.141 0.859 28 H 0.131 0.869 29 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.529 -2.562 -1.009 5.300 hybrid contribution 0.859 -0.733 0.648 1.302 sum -3.670 -3.296 -0.360 4.946 Atomic orbital electron populations 1.21715 0.89246 1.06503 1.03731 1.29943 1.07383 1.21977 1.13194 1.04214 0.74670 0.78464 0.72608 1.93383 1.85109 1.74895 1.45691 1.93414 1.85014 1.74501 1.45363 1.29878 1.23148 1.30274 1.04251 1.20621 0.94853 0.93204 0.95049 1.20917 0.94208 1.11290 1.00996 1.21248 0.99295 0.95373 0.93627 1.21564 0.94504 1.05479 0.99561 1.17375 0.92827 0.84840 0.89469 1.20566 1.07531 1.16287 1.08959 0.87453 1.26741 0.94092 0.93489 1.02802 1.69814 1.20716 1.13188 1.38192 0.85433 0.80399 0.79065 0.76355 1.17086 1.18254 1.18864 0.90969 0.90295 0.87539 0.84125 0.83747 0.85825 0.85489 0.85926 0.86874 0.89052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.98 9.92 71.98 0.71 -3.27 15 2 C -0.59 -19.69 6.50 71.98 0.47 -19.22 15 3 S 2.51 107.50 4.59 -56.49 -0.26 107.24 15 4 O -0.99 -44.28 16.74 -127.65 -2.14 -46.41 15 5 O -0.99 -47.78 15.64 -127.65 -2.00 -49.78 15 6 C -0.78 -38.00 5.63 22.73 0.13 -37.88 15 7 C -0.02 -0.83 9.49 22.22 0.21 -0.62 15 8 C -0.25 -10.95 10.05 22.46 0.23 -10.73 15 9 C -0.08 -3.43 10.02 22.22 0.22 -3.21 15 10 C -0.19 -9.63 8.68 22.73 0.20 -9.44 15 11 C 0.16 8.24 5.55 -21.29 -0.12 8.12 15 12 C -0.51 -25.39 6.83 23.46 0.16 -25.23 15 13 H 0.11 5.37 5.47 -2.91 -0.02 5.35 15 14 C 0.05 2.24 5.16 85.26 0.44 2.68 15 15 N -0.80 -37.18 10.99 21.83 0.24 -36.94 15 16 Si 0.97 35.06 29.59 68.60 2.03 37.09 15 17 H -0.25 -8.49 7.11 99.48 0.71 -7.78 15 18 H -0.26 -8.60 7.11 99.48 0.71 -7.89 15 19 H -0.26 -9.83 7.11 99.48 0.71 -9.13 15 20 H 0.07 1.83 8.14 -2.39 -0.02 1.81 15 21 H 0.08 1.84 8.14 -2.39 -0.02 1.82 15 22 H 0.11 2.14 8.14 -2.38 -0.02 2.12 15 23 H 0.14 4.95 6.77 -2.39 -0.02 4.93 15 24 H 0.14 4.22 8.14 -2.39 -0.02 4.21 15 25 H 0.12 5.20 7.20 -2.91 -0.02 5.18 15 26 H 0.13 4.56 8.06 -2.91 -0.02 4.54 15 27 H 0.12 4.62 8.06 -2.91 -0.02 4.59 15 28 H 0.11 5.77 6.26 -2.91 -0.02 5.75 15 29 H 0.30 12.41 8.30 -92.71 -0.77 11.64 15 Total: -1.00 -62.15 259.39 1.68 -60.46 By element: Atomic # 1 Polarization: 25.97 SS G_CDS: 1.16 Total: 27.12 kcal Atomic # 6 Polarization: -101.44 SS G_CDS: 2.65 Total: -98.79 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: 0.24 Total: -36.94 kcal Atomic # 8 Polarization: -92.06 SS G_CDS: -4.13 Total: -96.19 kcal Atomic # 14 Polarization: 35.06 SS G_CDS: 2.03 Total: 37.09 kcal Atomic # 16 Polarization: 107.50 SS G_CDS: -0.26 Total: 107.24 kcal Total: -62.15 1.68 -60.46 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063046455.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.037 kcal (2) G-P(sol) polarization free energy of solvation -62.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds