Wall clock time and date at job start Mon Mar 30 2020 03:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86802 * 120.00062 * 2 1 4 4 H 1.48496 * 109.47394 * 240.00222 * 3 2 1 5 5 H 1.48505 * 109.46602 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46765 * 119.99994 * 3 2 1 7 7 C 1.38958 * 120.00109 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99986 * 179.97438 * 7 2 1 9 9 N 1.37090 * 119.99929 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99999 * 179.97438 * 9 7 2 11 11 O 1.21291 * 120.00147 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00135 * 179.97438 * 10 9 7 13 13 N 1.46902 * 109.47389 * 180.02562 * 12 10 9 14 14 C 1.46901 * 111.00082 * 180.02562 * 13 12 10 15 15 C 1.50703 * 109.46801 * 180.02562 * 14 13 12 16 16 C 1.38425 * 122.53762 * 89.99949 * 15 14 13 17 17 C 1.33390 * 114.92123 * 179.97438 * 16 15 14 18 18 S 1.75891 * 109.59251 * 0.02562 * 17 16 15 19 19 C 1.33383 * 122.54063 * 269.97222 * 15 14 13 20 20 H 0.96989 * 120.00274 * 359.97438 * 1 2 3 21 21 H 0.97005 * 120.00426 * 0.02562 * 9 7 2 22 22 H 1.08999 * 109.46892 * 60.00959 * 12 10 9 23 23 H 1.08995 * 109.47696 * 300.00823 * 12 10 9 24 24 H 1.00896 * 110.99690 * 56.04887 * 13 12 10 25 25 H 1.08999 * 109.47322 * 60.00133 * 14 13 12 26 26 H 1.09003 * 109.47232 * 299.99766 * 14 13 12 27 27 H 1.07997 * 122.54292 * 359.71157 * 16 15 14 28 28 H 1.08003 * 125.20243 * 179.97438 * 17 16 15 29 29 H 1.08000 * 125.20529 * 0.06732 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2830 2.7464 0.0006 6 1 3.1019 1.6963 1.2126 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0016 11 8 3.2103 -3.5579 -0.0021 12 6 1.2439 -4.8629 -0.0010 13 7 2.1985 -5.9795 -0.0017 14 6 1.4982 -7.2708 -0.0018 15 6 2.5078 -8.3897 -0.0019 16 6 3.0066 -8.9426 1.1650 17 6 3.8919 -9.9245 0.9881 18 16 4.1365 -10.1952 -0.7326 19 6 2.9880 -8.9227 -1.1264 20 1 -0.4850 0.8399 0.0004 21 1 0.3534 -2.3907 -0.0005 22 1 0.6164 -4.9205 -0.8904 23 1 0.6182 -4.9209 0.8896 24 1 2.8339 -5.9125 0.7791 25 1 0.8729 -7.3451 -0.8915 26 1 0.8737 -7.3456 0.8885 27 1 2.7052 -8.6017 2.1444 28 1 4.3840 -10.4694 1.7802 29 1 2.7143 -8.6186 -2.1259 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063152861.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:07 Heat of formation + Delta-G solvation = -2.217523 kcal Electronic energy + Delta-G solvation = -14057.568601 eV Core-core repulsion = 11493.337866 eV Total energy + Delta-G solvation = -2564.230735 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -38.66737 -37.97025 -34.87136 -33.76093 -31.21504 -30.06663 -27.58909 -25.24748 -23.62046 -22.45113 -19.34023 -18.72586 -17.88769 -17.56301 -16.27961 -15.53535 -14.86378 -14.48876 -14.44097 -13.71714 -13.41881 -13.31062 -12.94121 -12.61048 -12.34005 -11.95104 -11.56260 -11.50450 -11.45121 -11.00363 -10.77894 -10.42932 -10.19853 -9.48435 -8.83061 -8.49324 -8.43553 -8.00543 -7.93631 -6.40042 -3.80804 0.99360 1.63644 1.94763 2.65177 3.21524 3.26873 3.31638 3.93148 4.16188 4.52136 4.88211 5.03424 5.14343 5.26638 5.33388 5.40285 5.61349 5.67176 5.81658 5.97326 6.03156 6.28113 6.37446 6.46991 7.22540 7.56638 7.68482 8.07994 8.63336 9.19569 9.56134 10.07958 10.77680 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.065787 B = 0.003815 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.515221 B = 7337.588857 C = 7505.038869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.299 4.299 8 H 0.102 0.898 9 N -0.564 5.564 10 C 0.441 3.559 11 O -0.582 6.582 12 C 0.050 3.950 13 N -0.664 5.664 14 C 0.117 3.883 15 C -0.100 4.100 16 C -0.126 4.126 17 C -0.216 4.216 18 S 0.080 5.920 19 C -0.184 4.184 20 H 0.272 0.728 21 H 0.392 0.608 22 H 0.087 0.913 23 H 0.044 0.956 24 H 0.351 0.649 25 H 0.079 0.921 26 H 0.037 0.963 27 H 0.138 0.862 28 H 0.162 0.838 29 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.993 -17.618 0.884 17.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.429 4.429 8 H 0.120 0.880 9 N -0.201 5.201 10 C 0.226 3.774 11 O -0.466 6.466 12 C -0.083 4.083 13 N -0.297 5.297 14 C -0.014 4.014 15 C -0.113 4.113 16 C -0.157 4.157 17 C -0.351 4.351 18 S 0.343 5.657 19 C -0.321 4.321 20 H 0.082 0.918 21 H 0.226 0.774 22 H 0.105 0.895 23 H 0.062 0.938 24 H 0.170 0.830 25 H 0.098 0.902 26 H 0.055 0.945 27 H 0.156 0.844 28 H 0.179 0.821 29 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 2.663 -18.433 -0.644 18.636 hybrid contribution -1.396 1.800 1.735 2.863 sum 1.267 -16.634 1.091 16.718 Atomic orbital electron populations 1.69600 1.05921 1.28243 1.50615 1.25265 0.95647 0.99718 0.97354 0.85912 0.78749 0.80443 0.79072 1.19885 1.20980 1.19934 1.19658 0.93350 0.82257 1.47642 0.87988 1.41856 1.09194 1.04580 1.64464 1.19804 0.88390 0.84714 0.84452 1.90527 1.13778 1.87055 1.55289 1.21693 0.94373 0.90947 1.01270 1.60116 1.18639 0.99342 1.51571 1.20599 0.92948 0.86766 1.01110 1.18862 1.01235 0.99137 0.92022 1.20128 0.98731 0.97391 0.99424 1.25511 1.05701 1.05021 0.98865 1.84191 1.43734 1.36688 1.01062 1.25487 1.02555 1.01327 1.02694 0.91839 0.77446 0.89513 0.93805 0.82991 0.90241 0.94502 0.84416 0.82060 0.81711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.70 13.05 55.50 0.72 -23.97 15 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 15 3 Si 0.93 21.23 29.55 -169.99 -5.02 16.21 15 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 15 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 15 7 C -0.30 -8.46 9.68 -14.93 -0.14 -8.60 15 8 H 0.10 3.02 7.16 -52.49 -0.38 2.64 15 9 N -0.56 -14.48 5.29 -10.96 -0.06 -14.54 15 10 C 0.44 10.60 7.82 -10.99 -0.09 10.51 15 11 O -0.58 -16.18 15.78 5.55 0.09 -16.10 15 12 C 0.05 0.89 6.17 -4.98 -0.03 0.86 15 13 N -0.66 -11.16 6.11 -116.34 -0.71 -11.87 15 14 C 0.12 1.52 5.94 -4.97 -0.03 1.49 15 15 C -0.10 -1.26 5.31 -106.25 -0.56 -1.82 15 16 C -0.13 -1.43 9.98 -41.21 -0.41 -1.85 15 17 C -0.22 -2.23 11.23 29.04 0.33 -1.90 15 18 S 0.08 0.84 23.34 -107.50 -2.51 -1.67 15 19 C -0.18 -2.20 10.98 29.04 0.32 -1.89 15 20 H 0.27 7.05 8.31 -40.82 -0.34 6.71 15 21 H 0.39 9.57 7.90 -40.82 -0.32 9.25 15 22 H 0.09 1.42 8.14 -51.93 -0.42 1.00 15 23 H 0.04 0.70 8.14 -51.93 -0.42 0.28 15 24 H 0.35 6.18 8.42 -39.29 -0.33 5.85 15 25 H 0.08 0.96 8.12 -51.93 -0.42 0.54 15 26 H 0.04 0.43 8.13 -51.93 -0.42 0.01 15 27 H 0.14 1.37 8.06 -52.49 -0.42 0.95 15 28 H 0.16 1.27 8.06 -52.48 -0.42 0.85 15 29 H 0.17 1.80 8.06 -52.49 -0.42 1.37 15 LS Contribution 275.54 15.07 4.15 4.15 Total: -1.00 -31.38 275.54 -7.18 -38.56 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -3.12 Total: 11.93 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: -0.72 Total: -2.71 kcal Atomic # 7 Polarization: -50.34 SS G_CDS: -0.04 Total: -50.38 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: 0.09 Total: -16.10 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 0.84 SS G_CDS: -2.51 Total: -1.67 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -31.38 -7.18 -38.56 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063152861.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.338 kcal (2) G-P(sol) polarization free energy of solvation -31.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds