Wall clock time and date at job start Mon Mar 30 2020 03:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86802 * 120.00062 * 2 1 4 4 H 1.48496 * 109.47394 * 240.00222 * 3 2 1 5 5 H 1.48505 * 109.46602 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46765 * 119.99994 * 3 2 1 7 7 C 1.38958 * 120.00109 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99986 * 179.97438 * 7 2 1 9 9 N 1.37090 * 119.99929 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99999 * 179.97438 * 9 7 2 11 11 O 1.21291 * 120.00147 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00135 * 179.97438 * 10 9 7 13 13 N 1.46902 * 109.47389 * 180.02562 * 12 10 9 14 14 C 1.46901 * 111.00082 * 180.02562 * 13 12 10 15 15 C 1.50703 * 109.46801 * 180.02562 * 14 13 12 16 16 C 1.38425 * 122.53762 * 89.99949 * 15 14 13 17 17 C 1.33390 * 114.92123 * 179.97438 * 16 15 14 18 18 S 1.75891 * 109.59251 * 0.02562 * 17 16 15 19 19 C 1.33383 * 122.54063 * 269.97222 * 15 14 13 20 20 H 0.96989 * 120.00274 * 359.97438 * 1 2 3 21 21 H 0.97005 * 120.00426 * 0.02562 * 9 7 2 22 22 H 1.08999 * 109.46892 * 60.00959 * 12 10 9 23 23 H 1.08995 * 109.47696 * 300.00823 * 12 10 9 24 24 H 1.00896 * 110.99690 * 56.04887 * 13 12 10 25 25 H 1.08999 * 109.47322 * 60.00133 * 14 13 12 26 26 H 1.09003 * 109.47232 * 299.99766 * 14 13 12 27 27 H 1.07997 * 122.54292 * 359.71157 * 16 15 14 28 28 H 1.08003 * 125.20243 * 179.97438 * 17 16 15 29 29 H 1.08000 * 125.20529 * 0.06732 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2830 2.7464 0.0006 6 1 3.1019 1.6963 1.2126 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0016 11 8 3.2103 -3.5579 -0.0021 12 6 1.2439 -4.8629 -0.0010 13 7 2.1985 -5.9795 -0.0017 14 6 1.4982 -7.2708 -0.0018 15 6 2.5078 -8.3897 -0.0019 16 6 3.0066 -8.9426 1.1650 17 6 3.8919 -9.9245 0.9881 18 16 4.1365 -10.1952 -0.7326 19 6 2.9880 -8.9227 -1.1264 20 1 -0.4850 0.8399 0.0004 21 1 0.3534 -2.3907 -0.0005 22 1 0.6164 -4.9205 -0.8904 23 1 0.6182 -4.9209 0.8896 24 1 2.8339 -5.9125 0.7791 25 1 0.8729 -7.3451 -0.8915 26 1 0.8737 -7.3456 0.8885 27 1 2.7052 -8.6017 2.1444 28 1 4.3840 -10.4694 1.7802 29 1 2.7143 -8.6186 -2.1259 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063152861.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:04 Heat of formation + Delta-G solvation = -24.954450 kcal Electronic energy + Delta-G solvation = -14058.554548 eV Core-core repulsion = 11493.337866 eV Total energy + Delta-G solvation = -2565.216682 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -40.21360 -39.24671 -36.33062 -35.63382 -33.26686 -31.07591 -28.91359 -26.89027 -25.06581 -23.42783 -21.13651 -19.96157 -19.62454 -18.49845 -17.77485 -17.09162 -16.41722 -16.08014 -15.88051 -15.24901 -14.98729 -14.60110 -13.85531 -13.77599 -13.60904 -13.45464 -13.16870 -12.92834 -12.71937 -12.51441 -12.43063 -12.12052 -11.64773 -11.50470 -10.36102 -10.01894 -9.68729 -9.43294 -9.19041 -8.46446 -5.95371 0.13523 0.80815 1.10473 1.40110 1.41873 1.52942 1.74863 2.05396 2.30201 3.05949 3.20658 3.61259 4.05570 4.11317 4.30892 4.40925 4.48659 4.55651 4.63932 4.71666 4.79438 5.16389 5.40662 5.50782 5.58416 5.87823 6.09787 6.37184 6.60395 7.12519 7.56191 8.11837 8.70638 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.065787 B = 0.003815 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.515221 B = 7337.588857 C = 7505.038869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.013 4.013 3 Si 0.994 3.006 4 H -0.273 1.273 5 H -0.269 1.269 6 H -0.272 1.272 7 C -0.336 4.336 8 H 0.078 0.922 9 N -0.573 5.573 10 C 0.437 3.563 11 O -0.625 6.625 12 C 0.065 3.935 13 N -0.680 5.680 14 C 0.121 3.879 15 C -0.114 4.114 16 C -0.143 4.143 17 C -0.214 4.214 18 S 0.097 5.903 19 C -0.202 4.202 20 H 0.278 0.722 21 H 0.397 0.603 22 H 0.107 0.893 23 H 0.070 0.930 24 H 0.343 0.657 25 H 0.089 0.911 26 H 0.054 0.946 27 H 0.149 0.851 28 H 0.186 0.814 29 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.603 -18.185 1.152 18.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.213 4.213 3 Si 0.817 3.183 4 H -0.198 1.198 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.465 4.465 8 H 0.096 0.904 9 N -0.210 5.210 10 C 0.225 3.775 11 O -0.512 6.512 12 C -0.068 4.068 13 N -0.312 5.312 14 C -0.010 4.010 15 C -0.127 4.127 16 C -0.173 4.173 17 C -0.349 4.349 18 S 0.360 5.640 19 C -0.339 4.339 20 H 0.087 0.913 21 H 0.231 0.769 22 H 0.125 0.875 23 H 0.088 0.912 24 H 0.161 0.839 25 H 0.107 0.893 26 H 0.072 0.928 27 H 0.167 0.833 28 H 0.203 0.797 29 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 2.240 -19.025 -0.379 19.160 hybrid contribution -1.251 1.883 1.642 2.794 sum 0.988 -17.142 1.263 17.217 Atomic orbital electron populations 1.69659 1.06786 1.29392 1.50178 1.26053 0.96587 1.02424 0.96248 0.84984 0.77765 0.76623 0.78929 1.19793 1.19371 1.19689 1.19629 0.92695 0.84081 1.50109 0.90413 1.41924 1.09364 1.04675 1.65038 1.20898 0.88243 0.86220 0.82189 1.90493 1.15989 1.87984 1.56688 1.21558 0.93964 0.87860 1.03390 1.60115 1.19023 1.00549 1.51537 1.20640 0.93100 0.84922 1.02310 1.18964 1.01705 0.99351 0.92680 1.20298 0.99366 0.97964 0.99666 1.25876 1.05064 1.04588 0.99396 1.84126 1.42847 1.35753 1.01262 1.25706 1.03125 1.02046 1.02993 0.91258 0.76878 0.87508 0.91203 0.83852 0.89311 0.92838 0.83318 0.79680 0.81300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.75 13.05 21.67 0.28 -49.47 15 2 C -0.01 -0.71 5.50 84.93 0.47 -0.25 15 3 Si 0.99 43.19 29.55 68.60 2.03 45.21 15 4 H -0.27 -11.76 7.11 99.48 0.71 -11.05 15 5 H -0.27 -10.97 7.11 99.48 0.71 -10.26 15 6 H -0.27 -11.65 7.11 99.48 0.71 -10.95 15 7 C -0.34 -19.27 9.68 84.04 0.81 -18.46 15 8 H 0.08 4.76 7.16 -2.91 -0.02 4.74 15 9 N -0.57 -29.68 5.29 -306.99 -1.62 -31.31 15 10 C 0.44 21.10 7.82 87.66 0.69 21.79 15 11 O -0.62 -35.45 15.78 -3.06 -0.05 -35.50 15 12 C 0.06 2.22 6.17 85.56 0.53 2.74 15 13 N -0.68 -22.10 6.11 -521.98 -3.19 -25.29 15 14 C 0.12 2.91 5.94 85.56 0.51 3.42 15 15 C -0.11 -2.71 5.31 -20.92 -0.11 -2.82 15 16 C -0.14 -3.02 9.98 21.22 0.21 -2.81 15 17 C -0.21 -4.00 11.23 66.72 0.75 -3.25 15 18 S 0.10 1.89 23.34 -56.49 -1.32 0.57 15 19 C -0.20 -4.62 10.98 66.72 0.73 -3.89 15 20 H 0.28 14.09 8.31 -92.72 -0.77 13.32 15 21 H 0.40 19.40 7.90 -92.70 -0.73 18.67 15 22 H 0.11 3.27 8.14 -2.39 -0.02 3.25 15 23 H 0.07 2.06 8.14 -2.39 -0.02 2.04 15 24 H 0.34 11.94 8.42 -89.70 -0.76 11.18 15 25 H 0.09 1.95 8.12 -2.39 -0.02 1.93 15 26 H 0.05 1.12 8.13 -2.39 -0.02 1.10 15 27 H 0.15 2.71 8.06 -2.91 -0.02 2.69 15 28 H 0.19 2.44 8.06 -2.91 -0.02 2.41 15 29 H 0.17 3.55 8.06 -2.91 -0.02 3.53 15 Total: -1.00 -67.11 275.54 0.41 -66.70 By element: Atomic # 1 Polarization: 32.91 SS G_CDS: -0.31 Total: 32.61 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: 4.58 Total: -3.53 kcal Atomic # 7 Polarization: -101.53 SS G_CDS: -4.53 Total: -106.06 kcal Atomic # 8 Polarization: -35.45 SS G_CDS: -0.05 Total: -35.50 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.21 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -1.32 Total: 0.57 kcal Total: -67.11 0.41 -66.70 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063152861.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.749 kcal (2) G-P(sol) polarization free energy of solvation -67.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds