Wall clock time and date at job start Mon Mar 30 2020 04:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 120.00338 * 2 1 4 4 H 1.48494 * 109.47132 * 0.02562 * 3 2 1 5 5 H 1.48507 * 109.47079 * 120.00426 * 3 2 1 6 6 H 1.48501 * 109.47054 * 240.00143 * 3 2 1 7 7 C 1.38813 * 119.99715 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00437 * 196.76842 * 7 2 1 9 9 N 1.36942 * 120.00143 * 16.76771 * 7 2 1 10 10 C 1.47078 * 120.87882 * 26.82887 * 9 7 2 11 11 C 1.53692 * 108.27856 * 128.75731 * 10 9 7 12 12 N 1.46903 * 109.25755 * 54.07982 * 11 10 9 13 13 C 1.38695 * 110.99897 * 172.60883 * 12 11 10 14 14 N 1.30245 * 126.16826 * 124.32795 * 13 12 11 15 15 N 1.26095 * 117.62379 * 179.97438 * 14 13 12 16 16 C 1.29317 * 117.97243 * 359.97438 * 15 14 13 17 17 S 1.76487 * 107.86609 * 359.76206 * 16 15 14 18 18 C 1.46897 * 111.26829 * 296.75819 * 12 11 10 19 19 C 1.47074 * 120.88247 * 207.11011 * 9 7 2 20 20 H 0.97002 * 119.99529 * 359.97438 * 1 2 3 21 21 H 1.09003 * 109.62879 * 248.52113 * 10 9 7 22 22 H 1.09001 * 109.63018 * 9.10225 * 10 9 7 23 23 H 1.09007 * 109.64794 * 294.07940 * 11 10 9 24 24 H 1.08997 * 109.42421 * 173.94430 * 11 10 9 25 25 H 1.07994 * 126.07122 * 180.02562 * 16 15 14 26 26 H 1.09004 * 109.49264 * 303.14537 * 18 12 11 27 27 H 1.08999 * 109.49345 * 183.06252 * 18 12 11 28 28 H 1.09000 * 109.63075 * 350.88766 * 19 9 7 29 29 H 1.08996 * 109.63500 * 111.47803 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 1.2854 2.7464 0.0006 5 1 3.1041 1.6962 1.2125 6 1 3.1040 1.6963 -1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0558 -1.2223 0.2693 9 7 1.3691 -2.3628 -0.3432 10 6 0.2033 -2.3448 -1.2397 11 6 0.4450 -3.3631 -2.3652 12 7 0.7543 -4.6726 -1.7756 13 6 0.8163 -5.6553 -2.7524 14 7 1.8226 -6.4502 -2.9802 15 7 1.7050 -7.2895 -3.9139 16 6 0.5966 -7.3046 -4.5798 17 16 -0.4574 -6.0602 -3.9051 18 6 1.9987 -4.6256 -0.9964 19 6 1.8243 -3.6596 0.1804 20 1 -0.4849 0.8401 0.0004 21 1 -0.6923 -2.6174 -0.6814 22 1 0.0839 -1.3483 -1.6652 23 1 1.2816 -3.0355 -2.9825 24 1 -0.4515 -3.4437 -2.9799 25 1 0.3566 -7.9648 -5.4001 26 1 2.8135 -4.2803 -1.6327 27 1 2.2289 -5.6216 -0.6182 28 1 2.7772 -3.5329 0.6943 29 1 1.0816 -4.0561 0.8726 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069965442.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:47 Heat of formation + Delta-G solvation = 85.415980 kcal Electronic energy + Delta-G solvation = -15117.994932 eV Core-core repulsion = 12589.857022 eV Total energy + Delta-G solvation = -2528.137910 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.074 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.08339 -39.93643 -36.49337 -33.50863 -32.14553 -31.29474 -28.84128 -26.62191 -24.97247 -24.59120 -21.86160 -20.73185 -19.98884 -18.96294 -17.94589 -16.79918 -16.71489 -16.08645 -15.56030 -15.47162 -15.40061 -14.90966 -14.55179 -14.23552 -13.33208 -13.17534 -12.65045 -12.56853 -12.29195 -12.16162 -11.89655 -11.80931 -11.63883 -11.37961 -11.10974 -10.65310 -10.61375 -9.53689 -8.79022 -7.92452 -5.37444 -0.50733 -0.23415 0.36575 1.48876 1.50465 1.56794 1.57725 2.40907 2.50161 3.24578 3.43477 3.53162 3.80995 4.05668 4.09211 4.31464 4.35518 4.47956 4.57619 4.64927 4.83451 5.02204 5.22096 5.49626 5.55458 5.63507 5.67314 6.32209 7.08142 7.62402 7.75318 8.29622 9.15411 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.051409 B = 0.006096 C = 0.005824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.517088 B = 4591.950205 C = 4806.817459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.044 4.044 3 Si 0.969 3.031 4 H -0.292 1.292 5 H -0.277 1.277 6 H -0.279 1.279 7 C -0.270 4.270 8 H 0.070 0.930 9 N -0.613 5.613 10 C 0.185 3.815 11 C 0.052 3.948 12 N -0.441 5.441 13 C 0.206 3.794 14 N -0.347 5.347 15 N -0.280 5.280 16 C 0.004 3.996 17 S 0.099 5.901 18 C 0.068 3.932 19 C 0.145 3.855 20 H 0.253 0.747 21 H 0.014 0.986 22 H 0.074 0.926 23 H 0.043 0.957 24 H 0.096 0.904 25 H 0.262 0.738 26 H 0.043 0.957 27 H 0.092 0.908 28 H 0.074 0.926 29 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.880 -11.060 -9.256 14.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.240 4.240 3 Si 0.797 3.203 4 H -0.218 1.218 5 H -0.202 1.202 6 H -0.205 1.205 7 C -0.399 4.399 8 H 0.088 0.912 9 N -0.337 5.337 10 C 0.059 3.941 11 C -0.076 4.076 12 N -0.162 5.162 13 C -0.166 4.166 14 N -0.191 5.191 15 N -0.112 5.112 16 C -0.299 4.299 17 S 0.337 5.663 18 C -0.062 4.062 19 C 0.019 3.981 20 H 0.062 0.938 21 H 0.032 0.968 22 H 0.093 0.907 23 H 0.061 0.939 24 H 0.114 0.886 25 H 0.278 0.722 26 H 0.061 0.939 27 H 0.111 0.889 28 H 0.093 0.907 29 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -2.057 -11.110 -8.819 14.334 hybrid contribution 0.697 1.092 -0.110 1.300 sum -1.361 -10.018 -8.929 13.489 Atomic orbital electron populations 1.70132 1.06496 1.26241 1.54897 1.25767 0.96097 1.01372 1.00765 0.85328 0.77579 0.79147 0.78281 1.21840 1.20227 1.20511 1.19488 0.92980 0.85653 1.41825 0.91244 1.44417 1.34287 1.02306 1.52717 1.20791 0.88458 0.96192 0.88647 1.23152 1.00871 0.85629 0.97977 1.58867 1.34931 1.04790 1.17591 1.28585 0.92391 0.99712 0.95888 1.71611 1.23795 1.07868 1.15800 1.70692 1.21428 1.16104 1.02996 1.31671 0.90523 1.02410 1.05313 1.85685 1.18514 1.33139 1.28987 1.22561 0.87133 1.01115 0.95433 1.21170 0.98769 0.85065 0.93077 0.93758 0.96764 0.90741 0.93866 0.88576 0.72205 0.93899 0.88948 0.90729 0.95581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.01 11.15 21.65 0.24 -52.77 15 2 C -0.04 -2.38 4.94 84.86 0.42 -1.96 15 3 Si 0.97 43.60 29.59 68.60 2.03 45.63 15 4 H -0.29 -13.18 7.11 99.48 0.71 -12.47 15 5 H -0.28 -12.12 7.11 99.48 0.71 -11.41 15 6 H -0.28 -12.26 7.11 99.48 0.71 -11.55 15 7 C -0.27 -14.47 9.63 84.03 0.81 -13.66 15 8 H 0.07 3.63 7.88 -2.91 -0.02 3.60 15 9 N -0.61 -30.25 3.03 -697.24 -2.11 -32.37 15 10 C 0.19 8.60 5.44 86.50 0.47 9.07 15 11 C 0.05 1.90 5.54 86.54 0.48 2.38 15 12 N -0.44 -15.78 4.69 -700.80 -3.29 -19.07 15 13 C 0.21 6.60 7.04 179.13 1.26 7.86 15 14 N -0.35 -11.80 10.56 -55.84 -0.59 -12.39 15 15 N -0.28 -8.17 11.55 -57.41 -0.66 -8.84 15 16 C 0.00 0.08 12.68 130.61 1.66 1.74 15 17 S 0.10 2.25 22.76 -56.49 -1.29 0.96 15 18 C 0.07 2.48 5.05 86.39 0.44 2.91 15 19 C 0.15 6.01 6.69 86.35 0.58 6.59 15 20 H 0.25 13.96 8.31 -92.71 -0.77 13.19 15 21 H 0.01 0.71 8.14 -2.39 -0.02 0.69 15 22 H 0.07 3.83 6.13 -2.39 -0.01 3.82 15 23 H 0.04 1.65 8.14 -2.38 -0.02 1.63 15 24 H 0.10 3.03 7.42 -2.39 -0.02 3.01 15 25 H 0.26 2.20 8.06 -2.91 -0.02 2.18 15 26 H 0.04 1.65 8.14 -2.38 -0.02 1.63 15 27 H 0.09 3.15 7.86 -2.39 -0.02 3.13 15 28 H 0.07 2.93 7.95 -2.39 -0.02 2.91 15 29 H 0.03 1.10 8.14 -2.39 -0.02 1.08 15 Total: -1.00 -64.07 257.84 1.60 -62.48 By element: Atomic # 1 Polarization: 0.28 SS G_CDS: 1.16 Total: 1.43 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: 6.11 Total: 14.93 kcal Atomic # 7 Polarization: -119.01 SS G_CDS: -6.41 Total: -125.42 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 16 Polarization: 2.25 SS G_CDS: -1.29 Total: 0.96 kcal Total: -64.07 1.60 -62.48 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069965442.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.893 kcal (2) G-P(sol) polarization free energy of solvation -64.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds