Wall clock time and date at job start Mon Mar 30 2020 04:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47028 * 2 1 4 4 N 1.46505 * 109.46978 * 119.99812 * 2 1 3 5 5 C 1.36953 * 119.99953 * 278.27935 * 4 2 1 6 6 H 1.08002 * 119.99581 * 47.59397 * 5 4 2 7 7 C 1.38980 * 119.99941 * 227.58750 * 5 4 2 8 8 N 1.31412 * 119.99870 * 6.56400 * 7 5 4 9 9 Si 1.86805 * 119.99831 * 186.56002 * 7 5 4 10 10 H 1.48496 * 109.46773 * 60.00575 * 9 7 5 11 11 H 1.48497 * 109.46694 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47118 * 300.00215 * 9 7 5 13 13 C 1.34776 * 119.99853 * 98.28916 * 4 2 1 14 14 O 1.21659 * 119.99936 * 173.51890 * 13 4 2 15 15 C 1.47182 * 119.99851 * 353.79200 * 13 4 2 16 16 C 1.35293 * 123.15094 * 172.79094 * 15 13 4 17 17 S 1.70938 * 108.82242 * 179.86831 * 16 15 13 18 18 C 1.70776 * 91.13243 * 0.33140 * 17 16 15 19 19 N 1.28648 * 110.57610 * 359.80389 * 18 17 16 20 20 H 1.09001 * 109.47172 * 305.05782 * 1 2 3 21 21 H 1.08992 * 109.47754 * 65.06173 * 1 2 3 22 22 H 1.09009 * 109.47079 * 185.06594 * 1 2 3 23 23 H 1.08996 * 109.47043 * 239.99644 * 2 1 3 24 24 H 1.09006 * 109.47419 * 184.66858 * 3 2 1 25 25 H 1.09001 * 109.47500 * 304.66800 * 3 2 1 26 26 H 1.08999 * 109.47468 * 64.66524 * 3 2 1 27 27 H 0.97003 * 119.99334 * 179.97438 * 8 7 5 28 28 H 1.08003 * 125.58846 * 359.97438 * 16 15 13 29 29 H 1.08001 * 124.70888 * 179.82863 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.0855 -0.0254 2.3915 6 1 1.2427 0.5571 2.7334 7 6 3.2381 -0.1000 3.1644 8 7 4.3079 -0.6998 2.6926 9 14 3.2666 0.6525 4.8740 10 1 2.2276 0.0072 5.7161 11 1 4.6028 0.4400 5.4860 12 1 2.9923 2.1088 4.7784 13 6 2.4016 -1.9805 1.1204 14 8 2.9165 -2.5196 2.0818 15 6 2.2025 -2.7351 -0.1275 16 6 2.6877 -3.9829 -0.3229 17 16 2.2420 -4.5092 -1.8870 18 6 1.4431 -3.0313 -2.1935 19 7 1.5309 -2.2501 -1.1752 20 1 -0.3633 0.5903 0.8412 21 1 -0.3634 0.4333 -0.9317 22 1 -0.3634 -1.0237 0.0908 23 1 1.8933 -0.5139 -0.8899 24 1 3.1268 1.4437 -0.0836 25 1 1.6100 1.9799 -0.8452 26 1 1.7465 1.9316 0.9288 27 1 5.1125 -0.7515 3.2320 28 1 3.2609 -4.5536 0.3928 29 1 0.9343 -2.7867 -3.1142 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070714892.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:16 Heat of formation + Delta-G solvation = 37.882482 kcal Electronic energy + Delta-G solvation = -15649.596797 eV Core-core repulsion = 13087.104928 eV Total energy + Delta-G solvation = -2562.491868 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 3.33 seconds Orbital eigenvalues (eV) -39.72003 -37.43855 -35.03316 -32.23385 -29.97304 -29.66719 -26.57525 -25.78052 -24.15966 -21.76587 -20.07539 -18.95703 -18.21246 -15.92476 -15.47090 -15.23776 -14.46432 -14.29440 -13.63802 -13.25928 -12.91509 -12.77891 -12.61503 -11.86836 -11.51147 -11.49016 -11.27027 -10.90072 -10.75694 -10.63915 -10.33738 -10.14968 -10.08300 -9.27106 -8.80736 -8.63972 -8.37892 -8.07860 -6.94148 -5.96726 -3.82796 1.09521 1.74221 2.09482 2.87938 3.34604 3.39127 3.40715 4.33149 4.63443 4.88537 5.12506 5.36896 5.58886 5.84828 5.98056 6.00736 6.23378 6.40672 6.44105 6.56019 6.73006 6.80930 6.89765 7.27324 7.35798 7.67686 7.97778 8.38928 9.14949 9.25732 9.72545 10.40455 11.05984 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.032158 B = 0.009214 C = 0.007645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.481755 B = 3038.068902 C = 3661.806887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.116 3.884 3 C -0.140 4.140 4 N -0.428 5.428 5 C -0.330 4.330 6 H 0.078 0.922 7 C 0.057 3.943 8 N -0.819 5.819 9 Si 0.912 3.088 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.526 3.474 14 O -0.518 6.518 15 C 0.041 3.959 16 C -0.240 4.240 17 S 0.142 5.858 18 C -0.015 4.015 19 N -0.429 5.429 20 H 0.044 0.956 21 H 0.043 0.957 22 H 0.047 0.953 23 H 0.103 0.897 24 H 0.048 0.952 25 H 0.039 0.961 26 H 0.063 0.937 27 H 0.262 0.738 28 H 0.181 0.819 29 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.523 -3.368 -10.316 11.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.011 3.989 3 C -0.198 4.198 4 N -0.149 5.149 5 C -0.458 4.458 6 H 0.096 0.904 7 C -0.153 4.153 8 N -0.453 5.453 9 Si 0.739 3.261 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.310 3.690 14 O -0.395 6.395 15 C -0.092 4.092 16 C -0.382 4.382 17 S 0.394 5.606 18 C -0.313 4.313 19 N -0.145 5.145 20 H 0.063 0.937 21 H 0.062 0.938 22 H 0.066 0.934 23 H 0.120 0.880 24 H 0.067 0.933 25 H 0.058 0.942 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.198 0.802 29 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -4.155 -4.025 -10.352 11.858 hybrid contribution 0.224 0.874 1.522 1.769 sum -3.931 -3.150 -8.830 10.166 Atomic orbital electron populations 1.21956 0.97307 1.00846 0.99656 1.21551 0.93227 0.93173 0.90936 1.21905 1.00759 0.96490 1.00683 1.43148 1.57361 1.06965 1.07450 1.18902 0.99356 1.31197 0.96306 0.90392 1.25397 0.94768 0.95913 0.99244 1.69944 1.01594 1.36972 1.36776 0.86280 0.77354 0.78995 0.83476 1.20084 1.21181 1.20223 1.16957 0.85219 0.82238 0.84588 1.90661 1.43477 1.68370 1.36978 1.21601 0.98224 0.93696 0.95701 1.26400 1.08927 1.01007 1.01827 1.82494 1.48426 1.20657 1.09033 1.28569 1.05444 0.94332 1.03001 1.67397 1.16214 1.31194 0.99678 0.93693 0.93778 0.93371 0.87994 0.93251 0.94194 0.91814 0.92795 0.80201 0.78831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.02 37.16 0.34 -2.33 15 2 C 0.12 2.53 2.56 -67.93 -0.17 2.35 15 3 C -0.14 -2.87 8.88 37.15 0.33 -2.54 15 4 N -0.43 -11.33 2.44 -109.02 -0.27 -11.60 15 5 C -0.33 -9.23 7.51 -14.99 -0.11 -9.34 15 6 H 0.08 2.11 7.83 -52.49 -0.41 1.70 15 7 C 0.06 1.64 4.76 -17.46 -0.08 1.55 15 8 N -0.82 -24.82 10.97 55.50 0.61 -24.22 15 9 Si 0.91 21.96 29.56 -169.99 -5.02 16.93 15 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 15 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 15 13 C 0.53 14.34 7.02 -12.63 -0.09 14.25 15 14 O -0.52 -15.96 13.98 5.23 0.07 -15.89 15 15 C 0.04 0.91 6.43 -84.53 -0.54 0.37 15 16 C -0.24 -4.50 10.62 29.68 0.32 -4.19 15 17 S 0.14 1.87 22.96 -107.50 -2.47 -0.60 15 18 C -0.01 -0.21 12.17 51.43 0.63 0.42 15 19 N -0.43 -8.05 6.06 -12.37 -0.07 -8.12 15 20 H 0.04 0.87 8.14 -51.93 -0.42 0.45 15 21 H 0.04 0.71 8.14 -51.93 -0.42 0.29 15 22 H 0.05 0.96 7.73 -51.92 -0.40 0.55 15 23 H 0.10 2.20 4.83 -52.44 -0.25 1.95 15 24 H 0.05 1.07 8.14 -51.93 -0.42 0.65 15 25 H 0.04 0.67 8.14 -51.93 -0.42 0.25 15 26 H 0.06 1.36 7.14 -51.93 -0.37 0.98 15 27 H 0.26 7.61 8.31 -40.82 -0.34 7.27 15 28 H 0.18 3.38 8.04 -52.48 -0.42 2.96 15 29 H 0.19 1.87 8.06 -52.49 -0.42 1.45 15 LS Contribution 260.77 15.07 3.93 3.93 Total: -1.00 -33.47 260.77 -5.72 -39.19 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: -3.11 Total: -0.18 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: 0.61 Total: 0.54 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: 0.27 Total: -43.94 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: 0.07 Total: -15.89 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 16 Polarization: 1.87 SS G_CDS: -2.47 Total: -0.60 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -33.47 -5.72 -39.19 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070714892.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.076 kcal (2) G-P(sol) polarization free energy of solvation -33.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.33 seconds