Wall clock time and date at job start Mon Mar 30 2020 04:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47028 * 2 1 4 4 N 1.46505 * 109.46978 * 119.99812 * 2 1 3 5 5 C 1.36953 * 119.99953 * 278.27935 * 4 2 1 6 6 H 1.08002 * 119.99581 * 47.59397 * 5 4 2 7 7 C 1.38980 * 119.99941 * 227.58750 * 5 4 2 8 8 N 1.31412 * 119.99870 * 6.56400 * 7 5 4 9 9 Si 1.86805 * 119.99831 * 186.56002 * 7 5 4 10 10 H 1.48496 * 109.46773 * 60.00575 * 9 7 5 11 11 H 1.48497 * 109.46694 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47118 * 300.00215 * 9 7 5 13 13 C 1.34776 * 119.99853 * 98.28916 * 4 2 1 14 14 O 1.21659 * 119.99936 * 173.51890 * 13 4 2 15 15 C 1.47182 * 119.99851 * 353.79200 * 13 4 2 16 16 C 1.35293 * 123.15094 * 172.79094 * 15 13 4 17 17 S 1.70938 * 108.82242 * 179.86831 * 16 15 13 18 18 C 1.70776 * 91.13243 * 0.33140 * 17 16 15 19 19 N 1.28648 * 110.57610 * 359.80389 * 18 17 16 20 20 H 1.09001 * 109.47172 * 305.05782 * 1 2 3 21 21 H 1.08992 * 109.47754 * 65.06173 * 1 2 3 22 22 H 1.09009 * 109.47079 * 185.06594 * 1 2 3 23 23 H 1.08996 * 109.47043 * 239.99644 * 2 1 3 24 24 H 1.09006 * 109.47419 * 184.66858 * 3 2 1 25 25 H 1.09001 * 109.47500 * 304.66800 * 3 2 1 26 26 H 1.08999 * 109.47468 * 64.66524 * 3 2 1 27 27 H 0.97003 * 119.99334 * 179.97438 * 8 7 5 28 28 H 1.08003 * 125.58846 * 359.97438 * 16 15 13 29 29 H 1.08001 * 124.70888 * 179.82863 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.0855 -0.0254 2.3915 6 1 1.2427 0.5571 2.7334 7 6 3.2381 -0.1000 3.1644 8 7 4.3079 -0.6998 2.6926 9 14 3.2666 0.6525 4.8740 10 1 2.2276 0.0072 5.7161 11 1 4.6028 0.4400 5.4860 12 1 2.9923 2.1088 4.7784 13 6 2.4016 -1.9805 1.1204 14 8 2.9165 -2.5196 2.0818 15 6 2.2025 -2.7351 -0.1275 16 6 2.6877 -3.9829 -0.3229 17 16 2.2420 -4.5092 -1.8870 18 6 1.4431 -3.0313 -2.1935 19 7 1.5309 -2.2501 -1.1752 20 1 -0.3633 0.5903 0.8412 21 1 -0.3634 0.4333 -0.9317 22 1 -0.3634 -1.0237 0.0908 23 1 1.8933 -0.5139 -0.8899 24 1 3.1268 1.4437 -0.0836 25 1 1.6100 1.9799 -0.8452 26 1 1.7465 1.9316 0.9288 27 1 5.1125 -0.7515 3.2320 28 1 3.2609 -4.5536 0.3928 29 1 0.9343 -2.7867 -3.1142 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070714892.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:12 Heat of formation + Delta-G solvation = 14.751498 kcal Electronic energy + Delta-G solvation = -15650.599831 eV Core-core repulsion = 13087.104928 eV Total energy + Delta-G solvation = -2563.494903 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.28670 -39.19460 -36.95404 -34.27618 -31.74509 -31.24377 -28.28297 -27.43768 -25.82571 -23.45447 -21.79402 -20.64384 -19.71202 -17.74930 -17.28434 -16.71958 -16.33376 -15.90492 -15.51017 -14.89245 -14.51723 -14.47345 -14.09468 -13.67032 -13.36232 -12.96978 -12.84670 -12.72828 -12.64028 -12.52982 -12.11150 -11.91682 -11.68860 -10.78885 -10.56137 -10.24287 -10.07315 -9.67974 -8.98798 -8.08672 -6.00270 -0.23039 0.52969 0.81641 1.36786 1.40730 1.47488 1.49991 2.36057 2.94352 3.19071 3.29099 3.51281 4.25179 4.36111 4.37560 4.57138 4.58292 4.86160 4.95359 4.99704 5.13611 5.17044 5.29399 5.49164 5.66394 5.71103 6.26728 6.66394 7.07096 7.26041 7.70801 8.39342 8.94100 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.032158 B = 0.009214 C = 0.007645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.481755 B = 3038.068902 C = 3661.806887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.107 3.893 3 C -0.133 4.133 4 N -0.444 5.444 5 C -0.345 4.345 6 H 0.080 0.920 7 C 0.004 3.996 8 N -0.862 5.862 9 Si 0.976 3.024 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.255 1.255 13 C 0.510 3.490 14 O -0.575 6.575 15 C 0.006 3.994 16 C -0.267 4.267 17 S 0.271 5.729 18 C -0.008 4.008 19 N -0.458 5.458 20 H 0.035 0.965 21 H 0.081 0.919 22 H 0.036 0.964 23 H 0.111 0.889 24 H 0.023 0.977 25 H 0.082 0.918 26 H 0.048 0.952 27 H 0.256 0.744 28 H 0.166 0.834 29 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.006 -3.598 -13.035 14.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.004 3.996 3 C -0.190 4.190 4 N -0.164 5.164 5 C -0.473 4.473 6 H 0.098 0.902 7 C -0.202 4.202 8 N -0.497 5.497 9 Si 0.800 3.200 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.180 1.180 13 C 0.296 3.704 14 O -0.456 6.456 15 C -0.128 4.128 16 C -0.409 4.409 17 S 0.525 5.475 18 C -0.306 4.306 19 N -0.174 5.174 20 H 0.054 0.946 21 H 0.100 0.900 22 H 0.055 0.945 23 H 0.128 0.872 24 H 0.042 0.958 25 H 0.100 0.900 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.184 0.816 29 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -5.673 -4.234 -13.123 14.910 hybrid contribution 0.615 0.771 2.135 2.352 sum -5.057 -3.463 -10.988 12.582 Atomic orbital electron populations 1.21811 0.95052 1.00287 1.01195 1.21846 0.94973 0.93302 0.89489 1.21843 0.99271 0.96218 1.01697 1.43479 1.57253 1.07322 1.08352 1.19168 0.99324 1.31168 0.97667 0.90246 1.26287 0.94431 0.96331 1.03130 1.70109 1.02119 1.39393 1.38070 0.85287 0.76943 0.79161 0.78571 1.20252 1.21312 1.17971 1.17733 0.83847 0.82670 0.86155 1.90590 1.45716 1.69716 1.39596 1.20937 1.01755 0.94541 0.95592 1.26624 1.08379 1.00428 1.05496 1.82036 1.44916 1.17699 1.02863 1.29406 1.03817 0.94382 1.02992 1.67253 1.17384 1.32843 0.99951 0.94627 0.90022 0.94511 0.87230 0.95758 0.89969 0.93304 0.93537 0.81619 0.73780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.60 9.02 71.98 0.65 -3.95 15 2 C 0.11 4.65 2.56 44.99 0.11 4.77 15 3 C -0.13 -5.35 8.88 71.98 0.64 -4.71 15 4 N -0.44 -24.26 2.44 -617.06 -1.50 -25.76 15 5 C -0.34 -20.02 7.51 84.07 0.63 -19.39 15 6 H 0.08 4.43 7.83 -2.91 -0.02 4.41 15 7 C 0.00 0.24 4.76 84.93 0.40 0.64 15 8 N -0.86 -55.00 10.97 21.67 0.24 -54.76 15 9 Si 0.98 46.66 29.56 68.60 2.03 48.69 15 10 H -0.28 -13.16 7.11 99.48 0.71 -12.45 15 11 H -0.29 -13.63 7.11 99.48 0.71 -12.93 15 12 H -0.26 -11.19 7.11 99.48 0.71 -10.49 15 13 C 0.51 29.04 7.02 86.59 0.61 29.65 15 14 O -0.58 -37.64 13.98 -4.22 -0.06 -37.70 15 15 C 0.01 0.27 6.43 40.55 0.26 0.53 15 16 C -0.27 -9.89 10.62 67.14 0.71 -9.18 15 17 S 0.27 6.00 22.96 -56.49 -1.30 4.70 15 18 C -0.01 -0.19 12.17 130.71 1.59 1.40 15 19 N -0.46 -16.28 6.06 -193.03 -1.17 -17.45 15 20 H 0.03 1.34 8.14 -2.39 -0.02 1.32 15 21 H 0.08 2.36 8.14 -2.39 -0.02 2.34 15 22 H 0.04 1.41 7.73 -2.38 -0.02 1.40 15 23 H 0.11 4.64 4.83 -3.38 -0.02 4.62 15 24 H 0.02 1.05 8.14 -2.38 -0.02 1.03 15 25 H 0.08 2.56 8.14 -2.39 -0.02 2.55 15 26 H 0.05 2.08 7.14 -2.39 -0.02 2.06 15 27 H 0.26 15.71 8.31 -92.71 -0.77 14.93 15 28 H 0.17 6.47 8.04 -2.91 -0.02 6.44 15 29 H 0.25 3.06 8.06 -2.91 -0.02 3.03 15 Total: -1.00 -79.25 260.77 5.00 -74.25 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: 1.15 Total: 8.27 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: 5.61 Total: -0.24 kcal Atomic # 7 Polarization: -95.53 SS G_CDS: -2.44 Total: -97.97 kcal Atomic # 8 Polarization: -37.64 SS G_CDS: -0.06 Total: -37.70 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Atomic # 16 Polarization: 6.00 SS G_CDS: -1.30 Total: 4.70 kcal Total: -79.25 5.00 -74.25 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070714892.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.000 kcal (2) G-P(sol) polarization free energy of solvation -79.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds