Wall clock time and date at job start Mon Mar 30 2020 04:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47404 * 2 1 4 4 H 1.09002 * 109.47153 * 54.99686 * 3 2 1 5 5 N 1.46500 * 109.47007 * 294.99774 * 3 2 1 6 6 C 1.34777 * 120.00075 * 84.99755 * 5 3 2 7 7 O 1.21692 * 119.99797 * 0.02562 * 6 5 3 8 8 C 1.46370 * 120.00227 * 179.97438 * 6 5 3 9 9 H 1.08002 * 119.99675 * 0.02562 * 8 6 5 10 10 C 1.40047 * 120.00156 * 179.97438 * 8 6 5 11 11 N 1.30675 * 120.00119 * 0.02562 * 10 8 6 12 12 Si 1.86799 * 120.00182 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.46951 * 0.02562 * 12 10 8 14 14 H 1.48506 * 109.47106 * 120.00073 * 12 10 8 15 15 H 1.48501 * 109.47520 * 240.00564 * 12 10 8 16 16 C 1.50701 * 109.47212 * 174.99684 * 3 2 1 17 17 N 1.29018 * 124.91795 * 254.99949 * 16 3 2 18 18 C 1.31781 * 117.12890 * 179.97438 * 17 16 3 19 19 C 1.33646 * 114.49543 * 0.02562 * 18 17 16 20 20 S 1.70981 * 124.91272 * 74.69695 * 16 3 2 21 21 H 1.09000 * 109.47476 * 300.00087 * 1 2 3 22 22 H 1.09008 * 109.46970 * 60.00049 * 1 2 3 23 23 H 1.08996 * 109.47654 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47017 * 239.99643 * 2 1 3 25 25 H 1.09008 * 109.46970 * 119.99951 * 2 1 3 26 26 H 0.96997 * 120.00274 * 264.99726 * 5 3 2 27 27 H 0.96991 * 119.99969 * 180.02562 * 11 10 8 28 28 H 1.08000 * 122.75709 * 180.02562 * 18 17 16 29 29 H 1.08000 * 126.03322 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 7 1.6525 2.0974 -1.2518 6 6 0.4352 2.6643 -1.3671 7 8 -0.3418 2.6325 -0.4311 8 6 0.0482 3.3192 -2.6176 9 1 0.7380 3.3477 -3.4481 10 6 -1.2169 3.9078 -2.7375 11 7 -2.0517 3.8728 -1.7328 12 14 -1.7105 4.7442 -4.3332 13 1 -0.5947 4.6477 -5.3083 14 1 -2.9137 4.0759 -4.8908 15 1 -2.0156 6.1734 -4.0693 16 6 3.5419 1.4442 0.1239 17 7 4.1942 1.7485 1.1946 18 6 5.5096 1.6983 1.1316 19 6 5.9937 1.3317 -0.0589 20 16 4.6279 1.0361 -1.1321 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8901 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8901 26 1 2.2720 2.1231 -1.9978 27 1 -2.9280 4.2802 -1.8160 28 1 6.1443 1.9340 1.9730 29 1 7.0377 1.2304 -0.3163 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070732760.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:38 Heat of formation + Delta-G solvation = 0.843748 kcal Electronic energy + Delta-G solvation = -14930.088418 eV Core-core repulsion = 12365.990430 eV Total energy + Delta-G solvation = -2564.097989 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 3.57 seconds Orbital eigenvalues (eV) -39.59064 -37.80605 -34.64739 -32.42985 -31.12714 -30.19818 -27.13148 -25.77674 -23.66325 -21.18599 -20.08211 -19.45030 -17.96302 -17.01015 -15.56327 -15.32141 -14.86000 -14.53055 -14.17055 -13.70964 -13.39404 -13.13861 -12.52054 -11.99743 -11.51036 -11.38899 -11.19717 -11.08598 -10.98837 -10.73704 -10.49866 -10.24763 -10.09368 -9.45044 -9.27615 -8.89061 -8.78406 -7.67215 -7.57757 -6.21937 -4.67631 0.83038 1.48761 1.90184 2.96216 3.11827 3.20568 3.24580 4.03615 4.23726 4.54878 4.88440 5.20230 5.21458 5.50995 5.57100 5.72370 5.88967 6.04333 6.20796 6.34403 6.46723 6.57272 6.87260 7.32618 7.41015 7.77972 7.89551 7.99486 8.27066 8.99554 9.42609 10.55054 10.72924 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.033908 B = 0.006759 C = 0.006134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.568931 B = 4141.539976 C = 4563.789618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.120 4.120 3 C 0.225 3.775 4 H 0.107 0.893 5 N -0.760 5.760 6 C 0.558 3.442 7 O -0.567 6.567 8 C -0.544 4.544 9 H 0.068 0.932 10 C 0.089 3.911 11 N -0.764 5.764 12 Si 0.907 3.093 13 H -0.264 1.264 14 H -0.276 1.276 15 H -0.276 1.276 16 C 0.067 3.933 17 N -0.477 5.477 18 C 0.040 3.960 19 C -0.276 4.276 20 S 0.124 5.876 21 H 0.059 0.941 22 H 0.078 0.922 23 H 0.034 0.966 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.378 0.622 27 H 0.268 0.732 28 H 0.173 0.827 29 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.170 -5.835 -0.076 13.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.161 4.161 3 C 0.115 3.885 4 H 0.125 0.875 5 N -0.417 5.417 6 C 0.363 3.637 7 O -0.449 6.449 8 C -0.581 4.581 9 H 0.086 0.914 10 C -0.131 4.131 11 N -0.393 5.393 12 Si 0.731 3.269 13 H -0.188 1.188 14 H -0.202 1.202 15 H -0.202 1.202 16 C -0.211 4.211 17 N -0.192 5.192 18 C -0.111 4.111 19 C -0.415 4.415 20 S 0.377 5.623 21 H 0.078 0.922 22 H 0.097 0.903 23 H 0.053 0.947 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.210 0.790 27 H 0.079 0.921 28 H 0.190 0.810 29 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 10.985 -5.956 0.143 12.497 hybrid contribution 0.903 0.670 -0.373 1.185 sum 11.888 -5.286 -0.231 13.013 Atomic orbital electron populations 1.21761 0.93388 0.99469 1.04981 1.21939 0.98358 0.94939 1.00816 1.19169 0.81995 0.94752 0.92606 0.87488 1.46395 1.19413 1.63155 1.12696 1.18168 0.78552 0.77724 0.89302 1.90626 1.50705 1.62349 1.41201 1.20886 1.00750 1.37894 0.98532 0.91404 1.25674 0.95905 0.94542 0.96987 1.70014 1.05929 1.33590 1.29776 0.86330 0.79034 0.79188 0.82309 1.18786 1.20161 1.20193 1.27719 1.02061 0.99848 0.91494 1.66283 1.07360 1.17529 1.27984 1.21820 0.90109 1.01354 0.97850 1.27053 1.03695 1.13082 0.97681 1.83995 0.97592 1.62599 1.18075 0.92190 0.90293 0.94675 0.92462 0.92426 0.78975 0.92112 0.80992 0.80858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 8.51 37.15 0.32 -2.48 15 2 C -0.12 -2.15 5.59 -26.74 -0.15 -2.30 15 3 C 0.22 4.44 2.76 -69.08 -0.19 4.25 15 4 H 0.11 2.44 7.58 -51.93 -0.39 2.05 15 5 N -0.76 -16.64 5.01 -56.35 -0.28 -16.92 15 6 C 0.56 15.11 6.31 -12.99 -0.08 15.03 15 7 O -0.57 -17.09 12.15 5.20 0.06 -17.02 15 8 C -0.54 -14.88 9.54 -35.63 -0.34 -15.22 15 9 H 0.07 1.72 7.85 -52.49 -0.41 1.31 15 10 C 0.09 2.41 5.50 -17.37 -0.10 2.32 15 11 N -0.76 -22.22 11.83 55.55 0.66 -21.56 15 12 Si 0.91 19.77 29.56 -169.99 -5.02 14.74 15 13 H -0.26 -5.57 7.11 56.52 0.40 -5.17 15 14 H -0.28 -5.91 7.11 56.52 0.40 -5.51 15 15 H -0.28 -5.96 7.11 56.52 0.40 -5.55 15 16 C 0.07 1.16 6.30 -13.46 -0.08 1.08 15 17 N -0.48 -8.19 10.54 -11.86 -0.13 -8.31 15 18 C 0.04 0.54 11.35 -19.18 -0.22 0.32 15 19 C -0.28 -3.27 11.37 29.12 0.33 -2.94 15 20 S 0.12 1.69 22.29 -107.50 -2.40 -0.71 15 21 H 0.06 1.29 7.84 -51.93 -0.41 0.89 15 22 H 0.08 1.89 5.65 -51.92 -0.29 1.59 15 23 H 0.03 0.60 8.14 -51.93 -0.42 0.18 15 24 H 0.06 0.94 8.14 -51.93 -0.42 0.52 15 25 H 0.06 0.93 8.14 -51.92 -0.42 0.51 15 26 H 0.38 7.46 7.78 -40.82 -0.32 7.15 15 27 H 0.27 7.09 8.29 -40.82 -0.34 6.75 15 28 H 0.17 1.77 8.06 -52.49 -0.42 1.34 15 29 H 0.17 1.46 8.06 -52.49 -0.42 1.04 15 LS Contribution 265.46 15.07 4.00 4.00 Total: -1.00 -31.92 265.46 -6.69 -38.62 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -3.07 Total: 7.10 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: -0.51 Total: 0.06 kcal Atomic # 7 Polarization: -47.05 SS G_CDS: 0.25 Total: -46.80 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: 0.06 Total: -17.02 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.74 kcal Atomic # 16 Polarization: 1.69 SS G_CDS: -2.40 Total: -0.71 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -31.92 -6.69 -38.62 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070732760.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.459 kcal (2) G-P(sol) polarization free energy of solvation -31.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.57 seconds