Wall clock time and date at job start Mon Mar 30 2020 04:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47404 * 2 1 4 4 H 1.09002 * 109.47153 * 54.99686 * 3 2 1 5 5 N 1.46500 * 109.47007 * 294.99774 * 3 2 1 6 6 C 1.34777 * 120.00075 * 84.99755 * 5 3 2 7 7 O 1.21692 * 119.99797 * 0.02562 * 6 5 3 8 8 C 1.46370 * 120.00227 * 179.97438 * 6 5 3 9 9 H 1.08002 * 119.99675 * 0.02562 * 8 6 5 10 10 C 1.40047 * 120.00156 * 179.97438 * 8 6 5 11 11 N 1.30675 * 120.00119 * 0.02562 * 10 8 6 12 12 Si 1.86799 * 120.00182 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.46951 * 0.02562 * 12 10 8 14 14 H 1.48506 * 109.47106 * 120.00073 * 12 10 8 15 15 H 1.48501 * 109.47520 * 240.00564 * 12 10 8 16 16 C 1.50701 * 109.47212 * 174.99684 * 3 2 1 17 17 N 1.29018 * 124.91795 * 254.99949 * 16 3 2 18 18 C 1.31781 * 117.12890 * 179.97438 * 17 16 3 19 19 C 1.33646 * 114.49543 * 0.02562 * 18 17 16 20 20 S 1.70981 * 124.91272 * 74.69695 * 16 3 2 21 21 H 1.09000 * 109.47476 * 300.00087 * 1 2 3 22 22 H 1.09008 * 109.46970 * 60.00049 * 1 2 3 23 23 H 1.08996 * 109.47654 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47017 * 239.99643 * 2 1 3 25 25 H 1.09008 * 109.46970 * 119.99951 * 2 1 3 26 26 H 0.96997 * 120.00274 * 264.99726 * 5 3 2 27 27 H 0.96991 * 119.99969 * 180.02562 * 11 10 8 28 28 H 1.08000 * 122.75709 * 180.02562 * 18 17 16 29 29 H 1.08000 * 126.03322 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 7 1.6525 2.0974 -1.2518 6 6 0.4352 2.6643 -1.3671 7 8 -0.3418 2.6325 -0.4311 8 6 0.0482 3.3192 -2.6176 9 1 0.7380 3.3477 -3.4481 10 6 -1.2169 3.9078 -2.7375 11 7 -2.0517 3.8728 -1.7328 12 14 -1.7105 4.7442 -4.3332 13 1 -0.5947 4.6477 -5.3083 14 1 -2.9137 4.0759 -4.8908 15 1 -2.0156 6.1734 -4.0693 16 6 3.5419 1.4442 0.1239 17 7 4.1942 1.7485 1.1946 18 6 5.5096 1.6983 1.1316 19 6 5.9937 1.3317 -0.0589 20 16 4.6279 1.0361 -1.1321 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8901 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8901 26 1 2.2720 2.1231 -1.9978 27 1 -2.9280 4.2802 -1.8160 28 1 6.1443 1.9340 1.9730 29 1 7.0377 1.2304 -0.3163 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070732760.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:29 Heat of formation + Delta-G solvation = -22.747139 kcal Electronic energy + Delta-G solvation = -14931.111396 eV Core-core repulsion = 12365.990430 eV Total energy + Delta-G solvation = -2565.120966 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -40.82678 -39.62038 -36.44330 -34.50920 -32.90844 -31.43215 -28.84725 -27.52040 -24.98340 -22.86605 -21.58004 -20.99752 -19.42543 -18.65658 -17.45707 -16.71846 -16.41580 -16.02293 -15.77855 -15.16802 -14.80334 -14.51616 -14.33571 -13.77501 -13.23486 -13.08301 -12.74894 -12.63306 -12.53082 -12.41279 -12.33353 -11.95599 -11.76061 -10.91372 -10.63590 -10.38510 -9.96168 -9.70312 -9.50111 -8.25954 -6.82248 -0.29327 0.38103 0.81138 1.41559 1.42290 1.59203 1.84559 2.25766 2.51172 2.80026 3.32512 3.64734 4.03774 4.15405 4.18795 4.40168 4.50780 4.57379 4.71597 4.91446 5.00125 5.20005 5.21839 5.35097 5.59478 5.88970 6.12240 6.25414 6.78500 6.90384 7.50033 8.51964 8.70053 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.033908 B = 0.006759 C = 0.006134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.568931 B = 4141.539976 C = 4563.789618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.111 4.111 3 C 0.229 3.771 4 H 0.063 0.937 5 N -0.748 5.748 6 C 0.547 3.453 7 O -0.608 6.608 8 C -0.572 4.572 9 H 0.085 0.915 10 C 0.033 3.967 11 N -0.817 5.817 12 Si 0.993 3.007 13 H -0.248 1.248 14 H -0.269 1.269 15 H -0.272 1.272 16 C 0.024 3.976 17 N -0.503 5.503 18 C 0.017 3.983 19 C -0.245 4.245 20 S 0.162 5.838 21 H 0.032 0.968 22 H 0.037 0.963 23 H 0.064 0.936 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.390 0.610 27 H 0.273 0.727 28 H 0.202 0.798 29 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.728 -6.348 -1.801 16.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.151 4.151 3 C 0.120 3.880 4 H 0.081 0.919 5 N -0.404 5.404 6 C 0.351 3.649 7 O -0.493 6.493 8 C -0.609 4.609 9 H 0.103 0.897 10 C -0.182 4.182 11 N -0.446 5.446 12 Si 0.813 3.187 13 H -0.171 1.171 14 H -0.194 1.194 15 H -0.197 1.197 16 C -0.254 4.254 17 N -0.219 5.219 18 C -0.133 4.133 19 C -0.385 4.385 20 S 0.415 5.585 21 H 0.051 0.949 22 H 0.056 0.944 23 H 0.082 0.918 24 H 0.095 0.905 25 H 0.097 0.903 26 H 0.224 0.776 27 H 0.083 0.917 28 H 0.219 0.781 29 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 13.591 -6.493 -1.584 15.145 hybrid contribution 0.268 0.786 0.215 0.858 sum 13.860 -5.706 -1.369 15.051 Atomic orbital electron populations 1.21609 0.95371 1.00178 1.01570 1.21855 0.96340 0.94185 1.02689 1.18958 0.84506 0.94840 0.89723 0.91915 1.46012 1.18130 1.62306 1.13990 1.18424 0.79592 0.77812 0.89048 1.90591 1.52423 1.63879 1.42446 1.21408 1.01824 1.38459 0.99202 0.89732 1.26854 0.95493 0.94753 1.01124 1.70175 1.06680 1.34985 1.32800 0.85032 0.79033 0.77655 0.76967 1.17077 1.19381 1.19672 1.27047 1.01065 1.03582 0.93660 1.66232 1.09433 1.17396 1.28839 1.22281 0.88968 1.02335 0.99726 1.27607 1.05035 1.09638 0.96170 1.83791 0.97026 1.61242 1.16428 0.94878 0.94369 0.91756 0.90454 0.90343 0.77616 0.91668 0.78115 0.76605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.44 8.51 71.98 0.61 -4.82 15 2 C -0.11 -3.97 5.59 30.59 0.17 -3.80 15 3 C 0.23 9.34 2.76 44.24 0.12 9.46 15 4 H 0.06 3.08 7.58 -2.39 -0.02 3.06 15 5 N -0.75 -33.65 5.01 -450.40 -2.26 -35.90 15 6 C 0.55 30.88 6.31 86.36 0.55 31.43 15 7 O -0.61 -38.93 12.15 -4.32 -0.05 -38.98 15 8 C -0.57 -31.91 9.54 24.83 0.24 -31.67 15 9 H 0.08 4.26 7.85 -2.91 -0.02 4.23 15 10 C 0.03 1.83 5.50 85.30 0.47 2.29 15 11 N -0.82 -49.22 11.83 21.84 0.26 -48.96 15 12 Si 0.99 40.62 29.56 68.60 2.03 42.65 15 13 H -0.25 -9.37 7.11 99.48 0.71 -8.67 15 14 H -0.27 -10.60 7.11 99.48 0.71 -9.89 15 15 H -0.27 -10.81 7.11 99.48 0.71 -10.10 15 16 C 0.02 0.80 6.30 88.52 0.56 1.35 15 17 N -0.50 -16.85 10.54 -191.44 -2.02 -18.86 15 18 C 0.02 0.41 11.35 83.66 0.95 1.36 15 19 C -0.25 -4.78 11.37 66.78 0.76 -4.02 15 20 S 0.16 3.99 22.29 -56.49 -1.26 2.73 15 21 H 0.03 1.51 7.84 -2.39 -0.02 1.49 15 22 H 0.04 1.90 5.65 -2.38 -0.01 1.89 15 23 H 0.06 2.24 8.14 -2.39 -0.02 2.22 15 24 H 0.08 2.45 8.14 -2.39 -0.02 2.43 15 25 H 0.08 2.49 8.14 -2.38 -0.02 2.47 15 26 H 0.39 15.39 7.78 -92.71 -0.72 14.66 15 27 H 0.27 14.97 8.29 -92.71 -0.77 14.20 15 28 H 0.20 3.46 8.06 -2.91 -0.02 3.44 15 29 H 0.22 2.30 8.06 -2.91 -0.02 2.28 15 Total: -1.00 -73.61 265.46 1.58 -72.03 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: 0.45 Total: 23.71 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: 4.42 Total: 1.59 kcal Atomic # 7 Polarization: -99.71 SS G_CDS: -4.02 Total: -103.73 kcal Atomic # 8 Polarization: -38.93 SS G_CDS: -0.05 Total: -38.98 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.65 kcal Atomic # 16 Polarization: 3.99 SS G_CDS: -1.26 Total: 2.73 kcal Total: -73.61 1.58 -72.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070732760.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.283 kcal (2) G-P(sol) polarization free energy of solvation -73.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds