Wall clock time and date at job start Mon Mar 30 2020 03:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33639 * 122.74746 * 2 1 4 4 S 1.76198 * 107.92452 * 179.76173 * 3 2 1 5 5 C 1.70977 * 90.28275 * 0.28241 * 4 3 2 6 6 C 1.50698 * 124.91630 * 179.97438 * 5 4 3 7 7 H 1.09008 * 109.46853 * 194.69694 * 6 5 4 8 8 C 1.52996 * 109.47387 * 74.69565 * 6 5 4 9 9 N 1.46500 * 109.47318 * 314.69312 * 6 5 4 10 10 C 1.34773 * 120.00431 * 205.00474 * 9 6 5 11 11 O 1.21693 * 119.99830 * 359.97438 * 10 9 6 12 12 C 1.46368 * 120.00188 * 179.72417 * 10 9 6 13 13 H 1.08001 * 120.00155 * 0.27756 * 12 10 9 14 14 C 1.40047 * 120.00322 * 180.27118 * 12 10 9 15 15 N 1.30674 * 119.99675 * 0.02562 * 14 12 10 16 16 Si 1.86795 * 120.00219 * 180.02562 * 14 12 10 17 17 H 1.48495 * 109.47159 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.47290 * 120.00211 * 16 14 12 19 19 H 1.48503 * 109.47163 * 240.00216 * 16 14 12 20 20 N 1.29029 * 110.16785 * 359.71163 * 5 4 3 21 21 H 1.09003 * 109.47230 * 270.02245 * 1 2 3 22 22 H 1.08996 * 109.47528 * 30.02261 * 1 2 3 23 23 H 1.08999 * 109.46974 * 150.02305 * 1 2 3 24 24 H 1.07995 * 126.03876 * 359.97438 * 3 2 1 25 25 H 1.09004 * 109.47132 * 179.97438 * 8 6 5 26 26 H 1.08994 * 109.47099 * 300.00014 * 8 6 5 27 27 H 1.09003 * 109.47061 * 60.00007 * 8 6 5 28 28 H 0.97000 * 119.99456 * 25.00037 * 9 6 5 29 29 H 0.96999 * 119.99862 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2299 1.1240 0.0000 4 16 3.9332 0.6732 0.0070 5 6 3.5040 -0.9818 0.0008 6 6 4.4836 -2.1269 0.0020 7 1 3.9654 -3.0486 -0.2634 8 6 5.0984 -2.2707 1.3956 9 7 5.5435 -1.8640 -0.9746 10 6 6.2247 -2.8898 -1.5224 11 8 5.9598 -4.0345 -1.2054 12 6 7.2796 -2.6274 -2.5026 13 1 7.5150 -1.6115 -2.7836 14 6 7.9837 -3.6936 -3.0760 15 7 7.6985 -4.9227 -2.7363 16 14 9.3303 -3.3586 -4.3265 17 1 9.4576 -1.8941 -4.5366 18 1 10.6185 -3.8999 -3.8236 19 1 8.9858 -4.0156 -5.6130 20 7 2.2199 -1.1083 0.0004 21 1 -0.3634 0.0004 1.0277 22 1 -0.3634 0.8897 -0.5142 23 1 -0.3633 -0.8902 -0.5135 24 1 1.8391 2.1308 -0.0004 25 1 5.8066 -3.0993 1.3965 26 1 5.6165 -1.3492 1.6609 27 1 4.3098 -2.4664 2.1222 28 1 5.7548 -0.9516 -1.2270 29 1 8.1859 -5.6612 -3.1337 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070732793.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:16 Heat of formation + Delta-G solvation = -3.271721 kcal Electronic energy + Delta-G solvation = -14583.688439 eV Core-core repulsion = 12019.411990 eV Total energy + Delta-G solvation = -2564.276449 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 6.17 seconds Orbital eigenvalues (eV) -39.77105 -37.59063 -34.51621 -32.46672 -31.49749 -29.56030 -27.57193 -26.18084 -24.86149 -21.57586 -20.02267 -19.16284 -17.79868 -17.02905 -15.52697 -15.21215 -14.79754 -14.54684 -14.01948 -13.42950 -13.28178 -12.86649 -12.60563 -12.43278 -12.38339 -11.70341 -11.58628 -11.23359 -11.11007 -11.03041 -10.77084 -10.50450 -10.21996 -9.44187 -9.26819 -8.89450 -8.59913 -7.71106 -7.66256 -6.22456 -4.68372 0.83749 1.50620 1.91126 2.89631 3.11989 3.20312 3.24752 4.00530 4.17658 4.54349 4.85305 5.04542 5.17636 5.27787 5.52574 5.60652 5.65926 5.82733 5.88384 5.97355 6.15194 6.30034 6.48299 6.69511 7.40605 7.77795 7.90843 7.98584 8.26695 8.98886 9.41683 10.54404 10.72272 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.040438 B = 0.005725 C = 0.005509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.253372 B = 4889.355211 C = 5081.297764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.067 3.933 3 C -0.278 4.278 4 S 0.122 5.878 5 C 0.071 3.929 6 C 0.223 3.777 7 H 0.107 0.893 8 C -0.152 4.152 9 N -0.760 5.760 10 C 0.557 3.443 11 O -0.574 6.574 12 C -0.543 4.543 13 H 0.069 0.931 14 C 0.087 3.913 15 N -0.765 5.765 16 Si 0.909 3.091 17 H -0.264 1.264 18 H -0.276 1.276 19 H -0.276 1.276 20 N -0.474 5.474 21 H 0.073 0.927 22 H 0.072 0.928 23 H 0.075 0.925 24 H 0.173 0.827 25 H 0.078 0.922 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.379 0.621 29 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.108 12.045 5.072 15.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.065 4.065 3 C -0.418 4.418 4 S 0.378 5.622 5 C -0.208 4.208 6 C 0.113 3.887 7 H 0.125 0.875 8 C -0.212 4.212 9 N -0.417 5.417 10 C 0.362 3.638 11 O -0.456 6.456 12 C -0.579 4.579 13 H 0.087 0.913 14 C -0.133 4.133 15 N -0.394 5.394 16 Si 0.733 3.267 17 H -0.187 1.187 18 H -0.201 1.201 19 H -0.201 1.201 20 N -0.189 5.189 21 H 0.092 0.908 22 H 0.091 0.909 23 H 0.094 0.906 24 H 0.191 0.809 25 H 0.097 0.903 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.211 0.789 29 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.528 11.000 5.282 14.338 hybrid contribution -0.203 0.749 -0.750 1.079 sum -7.731 11.749 4.531 14.776 Atomic orbital electron populations 1.20332 0.87349 1.03220 1.02703 1.20338 0.98197 0.86654 1.01340 1.26757 0.95534 1.03679 1.15799 1.83941 1.06995 1.03546 1.67745 1.27631 0.94147 0.98332 1.00679 1.19044 0.86058 0.92741 0.90890 0.87505 1.22194 1.01091 1.02773 0.95116 1.46397 1.38427 1.10027 1.46880 1.18245 0.81567 0.83018 0.80983 1.90614 1.69135 1.20988 1.64912 1.20884 1.18675 0.93921 1.24470 0.91276 1.25708 0.96919 0.94510 0.96132 1.70025 1.34874 0.99017 1.35479 0.86297 0.80617 0.79402 0.80344 1.18741 1.20126 1.20140 1.66137 1.04529 1.31413 1.16775 0.90817 0.90938 0.90567 0.80943 0.90316 0.92933 0.92580 0.78904 0.92066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.80 10.31 36.00 0.37 -0.43 15 2 C 0.07 0.96 6.74 -84.22 -0.57 0.39 15 3 C -0.28 -3.52 11.13 29.12 0.32 -3.19 15 4 S 0.12 1.73 22.29 -107.50 -2.40 -0.67 15 5 C 0.07 1.25 6.30 -13.46 -0.08 1.17 15 6 C 0.22 4.49 3.08 -69.09 -0.21 4.27 15 7 H 0.11 2.47 7.58 -51.92 -0.39 2.07 15 8 C -0.15 -2.71 9.47 37.16 0.35 -2.36 15 9 N -0.76 -17.11 5.06 -56.35 -0.28 -17.40 15 10 C 0.56 15.66 7.71 -12.99 -0.10 15.56 15 11 O -0.57 -18.26 14.68 5.20 0.08 -18.18 15 12 C -0.54 -15.17 9.54 -35.63 -0.34 -15.51 15 13 H 0.07 1.77 7.85 -52.49 -0.41 1.36 15 14 C 0.09 2.41 5.50 -17.37 -0.10 2.32 15 15 N -0.77 -22.72 11.83 55.55 0.66 -22.07 15 16 Si 0.91 19.97 29.56 -169.99 -5.02 14.95 15 17 H -0.26 -5.58 7.11 56.52 0.40 -5.18 15 18 H -0.28 -5.94 7.11 56.52 0.40 -5.53 15 19 H -0.28 -5.97 7.11 56.52 0.40 -5.57 15 20 N -0.47 -8.33 10.53 -8.06 -0.08 -8.41 15 21 H 0.07 0.66 8.14 -51.93 -0.42 0.24 15 22 H 0.07 0.58 8.12 -51.93 -0.42 0.16 15 23 H 0.08 0.83 8.14 -51.93 -0.42 0.41 15 24 H 0.17 1.60 8.06 -52.49 -0.42 1.18 15 25 H 0.08 1.58 8.14 -51.93 -0.42 1.16 15 26 H 0.05 0.84 8.14 -51.93 -0.42 0.42 15 27 H 0.06 0.89 8.14 -51.93 -0.42 0.46 15 28 H 0.38 7.63 7.78 -40.82 -0.32 7.31 15 29 H 0.27 7.21 8.29 -40.82 -0.34 6.87 15 LS Contribution 273.42 15.07 4.12 4.12 Total: -1.00 -33.57 273.42 -6.51 -40.07 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -3.22 Total: 5.36 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: -0.35 Total: 2.22 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: 0.29 Total: -47.88 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: 0.08 Total: -18.18 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Atomic # 16 Polarization: 1.73 SS G_CDS: -2.40 Total: -0.67 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -33.57 -6.51 -40.07 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070732793.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.802 kcal (2) G-P(sol) polarization free energy of solvation -33.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.17 seconds