Wall clock time and date at job start Mon Mar 30 2020 03:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33639 * 122.74746 * 2 1 4 4 S 1.76198 * 107.92452 * 179.76173 * 3 2 1 5 5 C 1.70977 * 90.28275 * 0.28241 * 4 3 2 6 6 C 1.50698 * 124.91630 * 179.97438 * 5 4 3 7 7 H 1.09008 * 109.46853 * 194.69694 * 6 5 4 8 8 C 1.52996 * 109.47387 * 74.69565 * 6 5 4 9 9 N 1.46500 * 109.47318 * 314.69312 * 6 5 4 10 10 C 1.34773 * 120.00431 * 205.00474 * 9 6 5 11 11 O 1.21693 * 119.99830 * 359.97438 * 10 9 6 12 12 C 1.46368 * 120.00188 * 179.72417 * 10 9 6 13 13 H 1.08001 * 120.00155 * 0.27756 * 12 10 9 14 14 C 1.40047 * 120.00322 * 180.27118 * 12 10 9 15 15 N 1.30674 * 119.99675 * 0.02562 * 14 12 10 16 16 Si 1.86795 * 120.00219 * 180.02562 * 14 12 10 17 17 H 1.48495 * 109.47159 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.47290 * 120.00211 * 16 14 12 19 19 H 1.48503 * 109.47163 * 240.00216 * 16 14 12 20 20 N 1.29029 * 110.16785 * 359.71163 * 5 4 3 21 21 H 1.09003 * 109.47230 * 270.02245 * 1 2 3 22 22 H 1.08996 * 109.47528 * 30.02261 * 1 2 3 23 23 H 1.08999 * 109.46974 * 150.02305 * 1 2 3 24 24 H 1.07995 * 126.03876 * 359.97438 * 3 2 1 25 25 H 1.09004 * 109.47132 * 179.97438 * 8 6 5 26 26 H 1.08994 * 109.47099 * 300.00014 * 8 6 5 27 27 H 1.09003 * 109.47061 * 60.00007 * 8 6 5 28 28 H 0.97000 * 119.99456 * 25.00037 * 9 6 5 29 29 H 0.96999 * 119.99862 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2299 1.1240 0.0000 4 16 3.9332 0.6732 0.0070 5 6 3.5040 -0.9818 0.0008 6 6 4.4836 -2.1269 0.0020 7 1 3.9654 -3.0486 -0.2634 8 6 5.0984 -2.2707 1.3956 9 7 5.5435 -1.8640 -0.9746 10 6 6.2247 -2.8898 -1.5224 11 8 5.9598 -4.0345 -1.2054 12 6 7.2796 -2.6274 -2.5026 13 1 7.5150 -1.6115 -2.7836 14 6 7.9837 -3.6936 -3.0760 15 7 7.6985 -4.9227 -2.7363 16 14 9.3303 -3.3586 -4.3265 17 1 9.4576 -1.8941 -4.5366 18 1 10.6185 -3.8999 -3.8236 19 1 8.9858 -4.0156 -5.6130 20 7 2.2199 -1.1083 0.0004 21 1 -0.3634 0.0004 1.0277 22 1 -0.3634 0.8897 -0.5142 23 1 -0.3633 -0.8902 -0.5135 24 1 1.8391 2.1308 -0.0004 25 1 5.8066 -3.0993 1.3965 26 1 5.6165 -1.3492 1.6609 27 1 4.3098 -2.4664 2.1222 28 1 5.7548 -0.9516 -1.2270 29 1 8.1859 -5.6612 -3.1337 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070732793.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:12 Heat of formation + Delta-G solvation = -28.423633 kcal Electronic energy + Delta-G solvation = -14584.779107 eV Core-core repulsion = 12019.411990 eV Total energy + Delta-G solvation = -2565.367117 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.98589 -39.55347 -36.31933 -34.57503 -32.85989 -31.18280 -28.53426 -28.24242 -26.24086 -23.16630 -21.69358 -20.62866 -19.44455 -18.49843 -17.52175 -16.75768 -16.21755 -15.99072 -15.59357 -15.02917 -14.65259 -14.45545 -14.04857 -13.77771 -13.43665 -13.34611 -13.04239 -12.87643 -12.78104 -12.64052 -12.42258 -12.18638 -11.97141 -10.95616 -10.66912 -10.41942 -9.95822 -9.69262 -9.62626 -8.30718 -6.88091 -0.33254 0.35184 0.77637 1.41103 1.41314 1.59448 1.73924 2.23871 2.45130 2.72093 3.25387 3.58597 3.87894 4.23469 4.26420 4.28348 4.38385 4.67856 4.78550 4.83189 4.84866 4.96595 5.15281 5.31516 5.36047 5.82288 6.04978 6.20706 6.77059 6.85148 7.43170 8.44242 8.64733 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.040438 B = 0.005725 C = 0.005509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.253372 B = 4889.355211 C = 5081.297764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.040 3.960 3 C -0.253 4.253 4 S 0.165 5.835 5 C 0.029 3.971 6 C 0.225 3.775 7 H 0.063 0.937 8 C -0.141 4.141 9 N -0.748 5.748 10 C 0.543 3.457 11 O -0.624 6.624 12 C -0.570 4.570 13 H 0.089 0.911 14 C 0.029 3.971 15 N -0.819 5.819 16 Si 1.000 3.000 17 H -0.246 1.246 18 H -0.268 1.268 19 H -0.270 1.270 20 N -0.499 5.499 21 H 0.087 0.913 22 H 0.101 0.899 23 H 0.063 0.937 24 H 0.215 0.785 25 H 0.047 0.953 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.392 0.608 29 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.102 15.273 4.596 17.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.092 4.092 3 C -0.392 4.392 4 S 0.420 5.580 5 C -0.249 4.249 6 C 0.116 3.884 7 H 0.081 0.919 8 C -0.201 4.201 9 N -0.404 5.404 10 C 0.347 3.653 11 O -0.510 6.510 12 C -0.606 4.606 13 H 0.107 0.893 14 C -0.187 4.187 15 N -0.449 5.449 16 Si 0.819 3.181 17 H -0.169 1.169 18 H -0.192 1.192 19 H -0.195 1.195 20 N -0.216 5.216 21 H 0.106 0.894 22 H 0.120 0.880 23 H 0.082 0.918 24 H 0.232 0.768 25 H 0.066 0.934 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.226 0.774 29 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.547 14.278 4.830 16.857 hybrid contribution -0.328 -0.148 -0.551 0.658 sum -7.875 14.130 4.278 16.733 Atomic orbital electron populations 1.20449 0.84823 1.04099 1.03913 1.20906 0.99889 0.86199 1.02197 1.27312 0.94324 1.05100 1.12500 1.83698 1.07974 0.99985 1.66392 1.26949 0.93974 0.99537 1.04424 1.18860 0.85871 0.92663 0.91015 0.91868 1.22061 1.01023 1.02558 0.94430 1.45997 1.38200 1.09530 1.46668 1.18604 0.82136 0.83221 0.81297 1.90570 1.70693 1.23205 1.66571 1.21426 1.19074 0.95280 1.24850 0.89265 1.26985 0.99619 0.93811 0.98261 1.70190 1.36750 1.00587 1.37336 0.84944 0.76383 0.80152 0.76653 1.16850 1.19238 1.19486 1.66104 1.04941 1.33920 1.16609 0.89410 0.88002 0.91752 0.76783 0.93427 0.90715 0.90637 0.77394 0.91480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.34 10.31 71.24 0.73 -0.60 15 2 C 0.04 1.05 6.74 41.52 0.28 1.33 15 3 C -0.25 -5.43 11.13 66.78 0.74 -4.69 15 4 S 0.16 4.24 22.29 -56.49 -1.26 2.98 15 5 C 0.03 1.00 6.30 88.52 0.56 1.56 15 6 C 0.23 9.46 3.08 44.24 0.14 9.59 15 7 H 0.06 3.17 7.58 -2.38 -0.02 3.15 15 8 C -0.14 -5.19 9.47 71.98 0.68 -4.51 15 9 N -0.75 -34.62 5.06 -450.40 -2.28 -36.89 15 10 C 0.54 31.73 7.71 86.36 0.67 32.39 15 11 O -0.62 -42.03 14.68 -4.33 -0.06 -42.10 15 12 C -0.57 -32.28 9.54 24.83 0.24 -32.04 15 13 H 0.09 4.52 7.85 -2.91 -0.02 4.49 15 14 C 0.03 1.59 5.50 85.30 0.47 2.06 15 15 N -0.82 -50.20 11.83 21.84 0.26 -49.94 15 16 Si 1.00 40.76 29.56 68.60 2.03 42.78 15 17 H -0.25 -9.20 7.11 99.48 0.71 -8.49 15 18 H -0.27 -10.47 7.11 99.48 0.71 -9.77 15 19 H -0.27 -10.66 7.11 99.48 0.71 -9.95 15 20 N -0.50 -17.42 10.53 -179.40 -1.89 -19.31 15 21 H 0.09 1.34 8.14 -2.39 -0.02 1.32 15 22 H 0.10 1.23 8.12 -2.39 -0.02 1.21 15 23 H 0.06 1.32 8.14 -2.39 -0.02 1.30 15 24 H 0.22 2.70 8.06 -2.91 -0.02 2.68 15 25 H 0.05 2.02 8.14 -2.39 -0.02 2.00 15 26 H 0.07 2.36 8.14 -2.39 -0.02 2.34 15 27 H 0.07 2.43 8.14 -2.39 -0.02 2.42 15 28 H 0.39 15.78 7.78 -92.71 -0.72 15.05 15 29 H 0.28 15.21 8.29 -92.71 -0.77 14.44 15 Total: -1.00 -76.93 273.42 1.75 -75.17 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: 0.45 Total: 22.20 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: 4.50 Total: 5.09 kcal Atomic # 7 Polarization: -102.23 SS G_CDS: -3.91 Total: -106.14 kcal Atomic # 8 Polarization: -42.03 SS G_CDS: -0.06 Total: -42.10 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 2.03 Total: 42.78 kcal Atomic # 16 Polarization: 4.24 SS G_CDS: -1.26 Total: 2.98 kcal Total: -76.93 1.75 -75.17 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070732793.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.750 kcal (2) G-P(sol) polarization free energy of solvation -76.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds