Wall clock time and date at job start Mon Mar 30 2020 04:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31641 * 1 3 3 Si 1.86799 * 119.99793 * 2 1 4 4 H 1.48499 * 109.47340 * 270.00484 * 3 2 1 5 5 H 1.48500 * 109.47125 * 30.00268 * 3 2 1 6 6 H 1.48501 * 109.47294 * 150.00369 * 3 2 1 7 7 C 1.38662 * 120.00403 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99835 * 359.97438 * 7 2 1 9 9 S 1.76200 * 120.00432 * 180.02562 * 7 2 1 10 10 C 1.76202 * 100.00318 * 179.97438 * 9 7 2 11 11 N 1.31400 * 126.48729 * 359.97438 * 10 9 7 12 12 N 1.28539 * 109.79009 * 179.73187 * 11 10 9 13 13 C 1.30487 * 110.06038 * 0.44986 * 12 11 10 14 14 C 1.50699 * 126.31334 * 179.81708 * 13 12 11 15 15 N 1.46897 * 109.47602 * 269.69405 * 14 13 12 16 16 N 1.36485 * 107.37163 * 359.56145 * 13 12 11 17 17 C 1.46493 * 127.12233 * 180.22431 * 16 13 12 18 18 C 1.53002 * 117.49821 * 196.81250 * 17 16 13 19 19 C 1.52997 * 117.49640 * 128.15335 * 17 16 13 20 20 H 0.96992 * 120.00047 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47032 * 29.69870 * 14 13 12 22 22 H 1.09005 * 109.47052 * 149.68897 * 14 13 12 23 23 H 1.00896 * 111.00109 * 180.02562 * 15 14 13 24 24 H 1.00901 * 111.00109 * 303.95478 * 15 14 13 25 25 H 1.09003 * 115.55182 * 342.48931 * 17 16 13 26 26 H 1.08994 * 117.49768 * 0.02562 * 18 17 16 27 27 H 1.09004 * 117.49644 * 145.02283 * 18 17 16 28 28 H 1.09004 * 117.50329 * 214.97860 * 19 17 16 29 29 H 1.09004 * 117.49869 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0466 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5480 1.4403 0.7000 7 6 2.0098 -1.2008 -0.0005 8 1 1.4698 -2.1362 -0.0005 9 16 3.7718 -1.2008 0.0001 10 6 4.0779 -2.9360 -0.0001 11 7 3.1732 -3.8890 -0.0002 12 7 3.7507 -5.0373 -0.0061 13 6 5.0469 -4.8865 -0.0004 14 6 6.0737 -5.9895 -0.0005 15 7 6.4074 -6.3481 1.3844 16 7 5.3011 -3.5455 -0.0002 17 6 6.6133 -2.8945 0.0006 18 6 6.6685 -1.4167 0.3932 19 6 6.8741 -1.8294 -1.0664 20 1 -0.4850 0.8400 0.0004 21 1 5.6699 -6.8618 -0.5145 22 1 6.9727 -5.6490 -0.5144 23 1 7.0949 -7.0861 1.4112 24 1 6.7234 -5.5409 1.9008 25 1 7.4512 -3.5256 0.2970 26 1 5.7285 -0.9291 0.6513 27 1 7.5428 -1.0756 0.9476 28 1 7.8836 -1.7595 -1.4717 29 1 6.0694 -1.6135 -1.7693 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070945182.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:18 Heat of formation + Delta-G solvation = 106.838692 kcal Electronic energy + Delta-G solvation = -14925.677354 eV Core-core repulsion = 12398.468402 eV Total energy + Delta-G solvation = -2527.208952 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.074 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.21890 -37.49930 -34.98937 -32.59161 -32.13871 -29.86889 -25.95770 -25.22661 -23.77098 -22.57775 -21.30666 -20.34064 -17.90295 -17.09249 -16.21154 -15.70525 -15.50545 -15.08607 -14.64500 -14.30227 -13.91858 -13.22699 -12.97459 -12.47764 -11.93026 -11.67703 -11.61553 -11.24777 -11.06143 -10.81763 -10.63540 -10.09135 -9.88574 -9.66472 -9.27230 -8.97988 -8.86727 -8.80482 -7.08609 -6.38563 -4.19348 2.12265 2.15781 2.93521 3.11959 3.17000 3.28660 3.49057 3.68633 4.06849 4.25595 4.42357 4.51431 4.64429 4.67510 4.78606 4.93673 4.99083 5.35531 5.55047 5.59835 5.93327 6.03691 6.18989 6.36040 6.62385 6.84570 7.18697 7.31858 7.87294 8.67880 9.00406 9.41082 10.71055 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.033539 B = 0.008332 C = 0.006953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.653606 B = 3359.631345 C = 4025.789175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.101 3.899 3 Si 0.843 3.157 4 H -0.263 1.263 5 H -0.265 1.265 6 H -0.241 1.241 7 C -0.535 4.535 8 H 0.120 0.880 9 S 0.059 5.941 10 C 0.186 3.814 11 N -0.288 5.288 12 N -0.272 5.272 13 C 0.148 3.852 14 C 0.163 3.837 15 N -0.840 5.840 16 N -0.449 5.449 17 C 0.055 3.945 18 C -0.182 4.182 19 C -0.177 4.177 20 H 0.274 0.726 21 H 0.103 0.897 22 H 0.041 0.959 23 H 0.347 0.653 24 H 0.341 0.659 25 H 0.137 0.863 26 H 0.128 0.872 27 H 0.111 0.889 28 H 0.108 0.892 29 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.595 -3.400 -0.201 18.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.110 4.110 3 Si 0.667 3.333 4 H -0.187 1.187 5 H -0.190 1.190 6 H -0.165 1.165 7 C -0.683 4.683 8 H 0.138 0.862 9 S 0.291 5.709 10 C -0.185 4.185 11 N -0.131 5.131 12 N -0.113 5.113 13 C -0.122 4.122 14 C 0.030 3.970 15 N -0.372 5.372 16 N -0.145 5.145 17 C -0.050 4.050 18 C -0.221 4.221 19 C -0.215 4.215 20 H 0.084 0.916 21 H 0.121 0.879 22 H 0.059 0.941 23 H 0.161 0.839 24 H 0.153 0.847 25 H 0.154 0.846 26 H 0.146 0.854 27 H 0.129 0.871 28 H 0.126 0.874 29 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 16.947 -3.261 -0.153 17.259 hybrid contribution 1.523 0.743 -0.216 1.708 sum 18.470 -2.518 -0.369 18.645 Atomic orbital electron populations 1.69922 1.05673 1.27750 1.46484 1.24675 0.94548 0.98267 0.93463 0.87020 0.81634 0.84588 0.80077 1.18742 1.18961 1.16530 1.22774 0.87273 0.99384 1.58837 0.86211 1.82557 1.12122 0.87361 1.88869 1.27439 0.82328 1.03716 1.05064 1.74889 1.23891 0.93207 1.21156 1.74005 1.02608 1.18614 1.16035 1.24443 0.95283 0.83074 1.09416 1.19836 0.92741 0.93993 0.90440 1.58533 1.51400 1.14310 1.12981 1.45790 1.05513 1.05898 1.57321 1.21812 0.84233 0.91173 1.07799 1.23825 1.05876 0.94287 0.98069 1.23488 1.04021 1.00899 0.93120 0.91586 0.87874 0.94098 0.83949 0.84669 0.84559 0.85446 0.87062 0.87365 0.87139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.72 13.97 55.48 0.78 -24.94 15 2 C 0.10 2.84 5.50 -17.48 -0.10 2.75 15 3 Si 0.84 19.48 27.73 -169.99 -4.71 14.77 15 4 H -0.26 -5.94 7.11 56.52 0.40 -5.54 15 5 H -0.27 -5.98 7.11 56.52 0.40 -5.58 15 6 H -0.24 -5.18 6.74 56.52 0.38 -4.80 15 7 C -0.53 -15.46 9.91 30.89 0.31 -15.15 15 8 H 0.12 3.91 7.16 -52.48 -0.38 3.54 15 9 S 0.06 1.38 15.37 -107.50 -1.65 -0.27 15 10 C 0.19 4.31 7.87 -88.12 -0.69 3.62 15 11 N -0.29 -7.52 11.05 30.72 0.34 -7.18 15 12 N -0.27 -6.33 12.18 32.97 0.40 -5.93 15 13 C 0.15 2.71 7.58 -154.10 -1.17 1.55 15 14 C 0.16 2.02 7.06 -4.98 -0.04 1.98 15 15 N -0.84 -9.24 9.61 -11.41 -0.11 -9.35 15 16 N -0.45 -8.20 3.15 -106.43 -0.34 -8.54 15 17 C 0.06 0.72 6.62 -67.93 -0.45 0.27 15 18 C -0.18 -2.31 9.71 -26.69 -0.26 -2.57 15 19 C -0.18 -2.10 10.02 -26.69 -0.27 -2.37 15 20 H 0.27 7.47 8.31 -40.82 -0.34 7.13 15 21 H 0.10 1.24 8.14 -51.93 -0.42 0.82 15 22 H 0.04 0.39 7.74 -51.93 -0.40 -0.01 15 23 H 0.35 2.61 9.08 -39.29 -0.36 2.25 15 24 H 0.34 3.57 8.99 -39.29 -0.35 3.22 15 25 H 0.14 1.27 7.78 -51.93 -0.40 0.87 15 26 H 0.13 2.06 4.38 -28.45 -0.12 1.94 15 27 H 0.11 1.04 8.14 -51.93 -0.42 0.61 15 28 H 0.11 0.92 8.14 -51.93 -0.42 0.49 15 29 H 0.11 1.59 7.89 -51.93 -0.41 1.18 15 LS Contribution 264.04 15.07 3.98 3.98 Total: -1.00 -34.46 264.04 -6.83 -41.29 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -2.85 Total: 6.11 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: -2.66 Total: -9.92 kcal Atomic # 7 Polarization: -57.02 SS G_CDS: 1.07 Total: -55.95 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -4.71 Total: 14.77 kcal Atomic # 16 Polarization: 1.38 SS G_CDS: -1.65 Total: -0.27 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -34.46 -6.83 -41.29 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070945182.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.126 kcal (2) G-P(sol) polarization free energy of solvation -34.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds