Wall clock time and date at job start Mon Mar 30 2020 04:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31641 * 1 3 3 Si 1.86799 * 119.99793 * 2 1 4 4 H 1.48499 * 109.47340 * 270.00484 * 3 2 1 5 5 H 1.48500 * 109.47125 * 30.00268 * 3 2 1 6 6 H 1.48501 * 109.47294 * 150.00369 * 3 2 1 7 7 C 1.38662 * 120.00403 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99835 * 359.97438 * 7 2 1 9 9 S 1.76200 * 120.00432 * 180.02562 * 7 2 1 10 10 C 1.76202 * 100.00318 * 179.97438 * 9 7 2 11 11 N 1.31400 * 126.48729 * 359.97438 * 10 9 7 12 12 N 1.28539 * 109.79009 * 179.73187 * 11 10 9 13 13 C 1.30487 * 110.06038 * 0.44986 * 12 11 10 14 14 C 1.50699 * 126.31334 * 179.81708 * 13 12 11 15 15 N 1.46897 * 109.47602 * 269.69405 * 14 13 12 16 16 N 1.36485 * 107.37163 * 359.56145 * 13 12 11 17 17 C 1.46493 * 127.12233 * 180.22431 * 16 13 12 18 18 C 1.53002 * 117.49821 * 196.81250 * 17 16 13 19 19 C 1.52997 * 117.49640 * 128.15335 * 17 16 13 20 20 H 0.96992 * 120.00047 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47032 * 29.69870 * 14 13 12 22 22 H 1.09005 * 109.47052 * 149.68897 * 14 13 12 23 23 H 1.00896 * 111.00109 * 180.02562 * 15 14 13 24 24 H 1.00901 * 111.00109 * 303.95478 * 15 14 13 25 25 H 1.09003 * 115.55182 * 342.48931 * 17 16 13 26 26 H 1.08994 * 117.49768 * 0.02562 * 18 17 16 27 27 H 1.09004 * 117.49644 * 145.02283 * 18 17 16 28 28 H 1.09004 * 117.50329 * 214.97860 * 19 17 16 29 29 H 1.09004 * 117.49869 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0466 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5480 1.4403 0.7000 7 6 2.0098 -1.2008 -0.0005 8 1 1.4698 -2.1362 -0.0005 9 16 3.7718 -1.2008 0.0001 10 6 4.0779 -2.9360 -0.0001 11 7 3.1732 -3.8890 -0.0002 12 7 3.7507 -5.0373 -0.0061 13 6 5.0469 -4.8865 -0.0004 14 6 6.0737 -5.9895 -0.0005 15 7 6.4074 -6.3481 1.3844 16 7 5.3011 -3.5455 -0.0002 17 6 6.6133 -2.8945 0.0006 18 6 6.6685 -1.4167 0.3932 19 6 6.8741 -1.8294 -1.0664 20 1 -0.4850 0.8400 0.0004 21 1 5.6699 -6.8618 -0.5145 22 1 6.9727 -5.6490 -0.5144 23 1 7.0949 -7.0861 1.4112 24 1 6.7234 -5.5409 1.9008 25 1 7.4512 -3.5256 0.2970 26 1 5.7285 -0.9291 0.6513 27 1 7.5428 -1.0756 0.9476 28 1 7.8836 -1.7595 -1.4717 29 1 6.0694 -1.6135 -1.7693 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070945182.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:11 Heat of formation + Delta-G solvation = 79.458872 kcal Electronic energy + Delta-G solvation = -14926.864632 eV Core-core repulsion = 12398.468402 eV Total energy + Delta-G solvation = -2528.396230 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.074 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -43.80601 -38.61479 -36.02371 -34.74955 -33.55100 -31.38355 -28.04059 -26.53322 -25.12119 -23.53037 -22.79406 -21.71871 -19.72000 -18.53329 -17.44984 -17.28874 -17.01884 -16.72180 -15.75234 -15.35883 -15.08931 -14.94603 -14.40286 -13.87358 -13.39599 -13.15248 -13.03154 -12.87758 -12.59564 -12.44869 -11.91086 -11.76550 -11.56013 -11.34601 -10.89303 -10.80287 -10.52072 -9.71755 -8.95222 -8.53302 -6.35079 0.44124 0.63435 1.28218 1.32254 1.40444 1.68382 1.82208 2.14313 2.31324 2.69387 2.83775 3.25274 3.45556 3.71811 3.75628 3.84086 3.92983 4.41544 4.44676 4.71885 4.73970 4.89941 5.00590 5.09566 5.17025 5.73090 5.91790 6.06389 6.31923 6.56803 6.83277 7.75320 8.61818 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.033539 B = 0.008332 C = 0.006953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.653606 B = 3359.631345 C = 4025.789175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.042 3.958 3 Si 0.915 3.085 4 H -0.250 1.250 5 H -0.253 1.253 6 H -0.213 1.213 7 C -0.574 4.574 8 H 0.059 0.941 9 S 0.114 5.886 10 C 0.159 3.841 11 N -0.348 5.348 12 N -0.330 5.330 13 C 0.177 3.823 14 C 0.166 3.834 15 N -0.851 5.851 16 N -0.439 5.439 17 C 0.034 3.966 18 C -0.184 4.184 19 C -0.165 4.165 20 H 0.280 0.720 21 H 0.107 0.893 22 H 0.086 0.914 23 H 0.370 0.630 24 H 0.346 0.654 25 H 0.187 0.813 26 H 0.091 0.909 27 H 0.155 0.845 28 H 0.155 0.845 29 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.590 -2.644 -0.119 23.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.163 4.163 3 Si 0.734 3.266 4 H -0.173 1.173 5 H -0.177 1.177 6 H -0.136 1.136 7 C -0.721 4.721 8 H 0.078 0.922 9 S 0.345 5.655 10 C -0.215 4.215 11 N -0.192 5.192 12 N -0.169 5.169 13 C -0.095 4.095 14 C 0.033 3.967 15 N -0.387 5.387 16 N -0.133 5.133 17 C -0.068 4.068 18 C -0.222 4.222 19 C -0.203 4.203 20 H 0.090 0.910 21 H 0.125 0.875 22 H 0.104 0.896 23 H 0.187 0.813 24 H 0.159 0.841 25 H 0.204 0.796 26 H 0.108 0.892 27 H 0.173 0.827 28 H 0.173 0.827 29 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 21.984 -2.547 -0.068 22.132 hybrid contribution 0.065 0.297 -0.247 0.391 sum 22.050 -2.250 -0.315 22.166 Atomic orbital electron populations 1.70072 1.08122 1.29423 1.47728 1.25828 0.95542 1.02751 0.92202 0.85935 0.81169 0.78363 0.81175 1.17341 1.17723 1.13609 1.22966 0.91927 0.97670 1.59553 0.92238 1.81888 1.05969 0.87773 1.89855 1.27413 0.84222 1.03468 1.06438 1.74763 1.26675 0.94857 1.22858 1.73884 1.05425 1.18119 1.19503 1.25614 0.95051 0.84403 1.04428 1.20091 0.92537 0.92120 0.91946 1.58390 1.52893 1.15381 1.12050 1.46109 1.06032 1.05735 1.55452 1.22631 0.82594 0.92238 1.09377 1.23861 1.05619 0.93387 0.99360 1.23605 1.05448 0.99135 0.92134 0.91042 0.87511 0.89629 0.81314 0.84061 0.79573 0.89163 0.82701 0.82737 0.90200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.55 13.97 21.62 0.30 -57.25 15 2 C 0.04 2.49 5.50 84.82 0.47 2.96 15 3 Si 0.92 40.31 27.73 68.60 1.90 42.21 15 4 H -0.25 -10.43 7.11 99.48 0.71 -9.72 15 5 H -0.25 -10.62 7.11 99.48 0.71 -9.91 15 6 H -0.21 -8.34 6.74 99.48 0.67 -7.67 15 7 C -0.57 -35.18 9.91 67.92 0.67 -34.51 15 8 H 0.06 4.26 7.16 -2.91 -0.02 4.24 15 9 S 0.11 5.40 15.37 -56.49 -0.87 4.53 15 10 C 0.16 7.55 7.87 179.48 1.41 8.96 15 11 N -0.35 -19.28 11.05 -56.71 -0.63 -19.91 15 12 N -0.33 -15.86 12.18 -49.59 -0.60 -16.47 15 13 C 0.18 6.27 7.58 137.67 1.04 7.31 15 14 C 0.17 3.52 7.06 85.56 0.60 4.12 15 15 N -0.85 -15.64 9.61 -190.01 -1.83 -17.47 15 16 N -0.44 -15.35 3.15 -490.64 -1.55 -16.89 15 17 C 0.03 0.74 6.62 44.99 0.30 1.04 15 18 C -0.18 -3.87 9.71 30.62 0.30 -3.58 15 19 C -0.17 -3.19 10.02 30.62 0.31 -2.89 15 20 H 0.28 15.93 8.31 -92.71 -0.77 15.15 15 21 H 0.11 2.25 8.14 -2.39 -0.02 2.23 15 22 H 0.09 1.12 7.74 -2.38 -0.02 1.11 15 23 H 0.37 4.01 9.08 -89.70 -0.81 3.19 15 24 H 0.35 5.86 8.99 -89.69 -0.81 5.05 15 25 H 0.19 2.16 7.78 -2.39 -0.02 2.14 15 26 H 0.09 2.69 4.38 -17.32 -0.08 2.61 15 27 H 0.16 1.93 8.14 -2.38 -0.02 1.91 15 28 H 0.15 1.59 8.14 -2.39 -0.02 1.57 15 29 H 0.08 2.11 7.89 -2.38 -0.02 2.09 15 Total: -1.00 -85.14 264.04 1.32 -83.82 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -0.52 Total: 14.00 kcal Atomic # 6 Polarization: -21.68 SS G_CDS: 5.10 Total: -16.58 kcal Atomic # 7 Polarization: -123.68 SS G_CDS: -4.30 Total: -127.98 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 1.90 Total: 42.21 kcal Atomic # 16 Polarization: 5.40 SS G_CDS: -0.87 Total: 4.53 kcal Total: -85.14 1.32 -83.82 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070945182.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.283 kcal (2) G-P(sol) polarization free energy of solvation -85.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds