Wall clock time and date at job start Mon Mar 30 2020 04:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35202 * 126.67579 * 2 1 4 4 C 1.42123 * 103.95762 * 179.97438 * 3 2 1 5 5 N 1.38976 * 126.91085 * 179.97438 * 4 3 2 6 6 C 1.36906 * 119.99882 * 5.00117 * 5 4 3 7 7 H 1.07994 * 119.99787 * 51.26141 * 6 5 4 8 8 C 1.38831 * 119.99620 * 231.54023 * 6 5 4 9 9 N 1.31553 * 119.99804 * 206.43675 * 8 6 5 10 10 Si 1.86802 * 120.00354 * 26.44068 * 8 6 5 11 11 H 1.48499 * 109.47071 * 53.78657 * 10 8 6 12 12 H 1.48495 * 109.47334 * 173.78593 * 10 8 6 13 13 H 1.48502 * 109.46869 * 293.78945 * 10 8 6 14 14 C 1.46502 * 119.99941 * 184.99866 * 5 4 3 15 15 C 1.52999 * 109.47195 * 274.66748 * 14 5 4 16 16 C 1.50697 * 109.47103 * 179.61191 * 15 14 5 17 17 O 1.20828 * 120.00186 * 0.02562 * 16 15 14 18 18 O 1.34225 * 120.00292 * 180.02562 * 16 15 14 19 19 N 1.30880 * 106.18027 * 0.26102 * 4 3 2 20 20 O 1.20913 * 111.43250 * 359.53669 * 19 4 3 21 21 H 1.09005 * 109.46742 * 90.00272 * 1 2 3 22 22 H 1.08999 * 109.47136 * 210.00005 * 1 2 3 23 23 H 1.09001 * 109.47360 * 330.00649 * 1 2 3 24 24 H 1.07997 * 128.01858 * 359.93831 * 3 2 1 25 25 H 0.97005 * 120.00152 * 180.02562 * 9 8 6 26 26 H 1.08998 * 109.47154 * 34.67118 * 14 5 4 27 27 H 1.08999 * 109.46708 * 154.67085 * 14 5 4 28 28 H 1.08998 * 109.46978 * 299.61607 * 15 14 5 29 29 H 1.09005 * 109.46841 * 59.61212 * 15 14 5 30 30 H 0.96694 * 117.00626 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3146 1.0844 0.0000 4 6 3.6255 0.5355 0.0006 5 7 4.8246 1.2381 0.0004 6 6 4.8179 2.6033 0.1028 7 1 4.2626 3.0826 0.8954 8 6 5.5203 3.3717 -0.8157 9 7 5.9601 4.5641 -0.4761 10 14 5.8409 2.7125 -2.5339 11 1 4.5561 2.2995 -3.1534 12 1 6.4712 3.7724 -3.3612 13 1 6.7504 1.5413 -2.4530 14 6 6.0956 0.5179 -0.1095 15 6 6.5430 0.0583 1.2796 16 6 7.8456 -0.6908 1.1654 17 8 8.3633 -0.8412 0.0841 18 8 8.4308 -1.1910 2.2649 19 7 3.4765 -0.7648 -0.0048 20 8 2.3080 -1.0756 0.0006 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3634 0.8900 0.5137 24 1 2.0295 2.1260 -0.0009 25 1 6.4506 5.1012 -1.1179 26 1 5.9665 -0.3504 -0.7555 27 1 6.8516 1.1780 -0.5347 28 1 6.6787 0.9271 1.9236 29 1 5.7838 -0.5963 1.7077 30 1 9.2655 -1.6634 2.1418 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071719008.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:02 Heat of formation + Delta-G solvation = -22.119251 kcal Electronic energy + Delta-G solvation = -17225.210456 eV Core-core repulsion = 14217.363846 eV Total energy + Delta-G solvation = -3007.846610 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.094 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.63736 -39.92207 -36.92813 -35.80499 -32.98358 -32.50662 -31.82782 -29.88550 -27.13537 -25.09808 -23.93271 -21.76570 -20.85889 -19.17670 -17.85953 -17.32740 -16.62232 -16.28465 -16.13339 -15.71454 -15.04947 -14.53387 -13.51437 -13.43630 -13.07070 -12.90527 -12.88002 -12.48988 -12.42278 -11.99969 -11.73744 -11.27463 -11.12922 -10.92529 -10.40971 -10.26099 -10.14842 -10.01956 -9.74659 -8.81734 -8.53578 -6.93883 -6.50533 -4.13767 2.34675 2.53953 3.17049 3.25375 3.28455 3.35285 3.58900 4.01201 4.18802 4.39411 4.83723 5.24036 5.40508 5.56931 5.59358 5.65821 5.79292 5.88214 6.10767 6.11245 6.20819 6.41903 6.44800 6.62553 6.77603 6.85615 7.60292 8.14016 8.18042 8.52984 9.15048 9.23910 9.72865 10.59193 Molecular weight = 240.09amu Principal moments of inertia in cm(-1) A = 0.015963 B = 0.010866 C = 0.007352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.636880 B = 2576.168616 C = 3807.599388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.046 4.046 3 C -0.246 4.246 4 C 0.290 3.710 5 N -0.453 5.453 6 C -0.325 4.325 7 H 0.093 0.907 8 C 0.078 3.922 9 N -0.855 5.855 10 Si 0.861 3.139 11 H -0.268 1.268 12 H -0.286 1.286 13 H -0.262 1.262 14 C 0.141 3.859 15 C -0.127 4.127 16 C 0.485 3.515 17 O -0.520 6.520 18 O -0.521 6.521 19 N -0.462 5.462 20 O 0.056 5.944 21 H 0.077 0.923 22 H 0.073 0.927 23 H 0.083 0.917 24 H 0.162 0.838 25 H 0.276 0.724 26 H 0.063 0.937 27 H 0.084 0.916 28 H 0.113 0.887 29 H 0.102 0.898 30 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.906 -7.203 2.767 8.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.110 4.110 3 C -0.270 4.270 4 C 0.040 3.960 5 N -0.165 5.165 6 C -0.453 4.453 7 H 0.110 0.890 8 C -0.132 4.132 9 N -0.489 5.489 10 Si 0.686 3.314 11 H -0.193 1.193 12 H -0.212 1.212 13 H -0.187 1.187 14 C 0.017 3.983 15 C -0.167 4.167 16 C 0.327 3.673 17 O -0.409 6.409 18 O -0.333 6.333 19 N -0.198 5.198 20 O 0.010 5.990 21 H 0.096 0.904 22 H 0.092 0.908 23 H 0.102 0.898 24 H 0.180 0.820 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.102 0.898 28 H 0.131 0.869 29 H 0.120 0.880 30 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -3.220 -7.796 2.463 8.788 hybrid contribution 0.522 0.423 -1.006 1.210 sum -2.698 -7.373 1.457 7.986 Atomic orbital electron populations 1.20155 0.85456 1.03546 1.03089 1.24019 0.95560 0.87319 1.04147 1.21975 0.90752 1.00353 1.13925 1.21271 0.89805 0.87969 0.96926 1.41375 0.97661 1.04195 1.73292 1.18631 1.36097 0.77565 1.13002 0.89000 1.25567 0.94965 0.94779 0.97847 1.69862 1.32039 1.11729 1.35252 0.87191 0.79598 0.79261 0.85354 1.19309 1.21212 1.18714 1.21397 0.87361 0.96717 0.92871 1.21933 0.90626 1.00605 1.03491 1.23791 0.86677 0.75697 0.81105 1.90696 1.64797 1.56260 1.29126 1.84590 1.41109 1.68260 1.39302 1.73931 0.96098 1.13927 1.35814 1.84666 1.11038 1.31788 1.71537 0.90409 0.90774 0.89837 0.82049 0.91418 0.91867 0.89821 0.86900 0.87961 0.73988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.74 10.44 36.01 0.38 -0.36 16 2 C -0.05 -0.81 7.47 -35.39 -0.26 -1.07 16 3 C -0.25 -5.00 10.37 -39.17 -0.41 -5.40 16 4 C 0.29 6.68 7.56 -155.17 -1.17 5.51 16 5 N -0.45 -10.91 1.96 -115.03 -0.23 -11.14 16 6 C -0.33 -8.49 9.11 -15.07 -0.14 -8.62 16 7 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 8 C 0.08 2.06 5.08 -17.45 -0.09 1.97 16 9 N -0.86 -23.56 13.96 55.49 0.77 -22.79 16 10 Si 0.86 20.98 26.79 -169.99 -4.55 16.43 16 11 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.26 -6.38 6.12 56.52 0.35 -6.03 16 14 C 0.14 3.18 3.51 -4.04 -0.01 3.17 16 15 C -0.13 -2.41 6.12 -27.88 -0.17 -2.58 16 16 C 0.48 8.57 8.33 36.00 0.30 8.87 16 17 O -0.52 -10.65 16.74 -18.75 -0.31 -10.96 16 18 O -0.52 -7.22 13.42 -39.24 -0.53 -7.74 16 19 N -0.46 -10.29 11.65 31.16 0.36 -9.92 16 20 O 0.06 1.11 11.19 16.99 0.19 1.30 16 21 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 22 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.16 3.15 8.04 -52.49 -0.42 2.73 16 25 H 0.28 7.16 8.31 -40.82 -0.34 6.82 16 26 H 0.06 1.46 7.85 -51.93 -0.41 1.05 16 27 H 0.08 2.00 5.36 -51.93 -0.28 1.73 16 28 H 0.11 2.11 8.14 -51.93 -0.42 1.69 16 29 H 0.10 1.90 8.14 -51.93 -0.42 1.48 16 30 H 0.40 3.60 9.10 45.56 0.41 4.02 16 LS Contribution 271.46 15.07 4.09 4.09 Total: -1.00 -31.14 271.46 -4.20 -35.34 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -2.42 Total: 3.93 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -1.58 Total: 1.47 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: 0.91 Total: -43.85 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: -0.65 Total: -17.40 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.55 Total: 16.43 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -31.14 -4.20 -35.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071719008.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.217 kcal (2) G-P(sol) polarization free energy of solvation -31.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds