Wall clock time and date at job start Mon Mar 30 2020 04:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34336 * 125.40716 * 2 1 4 4 C 1.47568 * 126.59964 * 0.02562 * 3 2 1 5 5 O 1.21449 * 119.99754 * 0.03008 * 4 3 2 6 6 O 1.34750 * 120.00139 * 180.02562 * 4 3 2 7 7 C 1.51082 * 106.80243 * 179.90453 * 3 2 1 8 8 C 1.52995 * 110.28381 * 241.07953 * 7 3 2 9 9 C 1.52998 * 109.93072 * 119.44682 * 7 3 2 10 10 C 1.50692 * 109.47067 * 181.87654 * 9 7 3 11 11 H 1.08000 * 120.00217 * 359.97438 * 10 9 7 12 12 C 1.37885 * 119.99923 * 180.02562 * 10 9 7 13 13 N 1.31521 * 119.99647 * 179.97438 * 12 10 9 14 14 Si 1.86791 * 119.99941 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.47275 * 90.00576 * 14 12 10 16 16 H 1.48500 * 109.47004 * 210.00095 * 14 12 10 17 17 H 1.48497 * 109.47179 * 329.99912 * 14 12 10 18 18 O 1.45464 * 106.20315 * 0.35951 * 7 3 2 19 19 C 1.34525 * 107.88867 * 359.78667 * 18 7 3 20 20 O 1.21446 * 125.03739 * 179.97438 * 19 18 7 21 21 H 1.09002 * 109.47152 * 179.71863 * 1 2 3 22 22 H 1.09001 * 109.46980 * 59.71963 * 1 2 3 23 23 H 1.09004 * 109.47113 * 299.71944 * 1 2 3 24 24 H 0.96698 * 116.99858 * 180.02562 * 6 4 3 25 25 H 1.08996 * 109.47173 * 177.58399 * 8 7 3 26 26 H 1.09004 * 109.47121 * 297.58288 * 8 7 3 27 27 H 1.09000 * 109.47557 * 57.57747 * 8 7 3 28 28 H 1.08996 * 109.47021 * 301.87856 * 9 7 3 29 29 H 1.09002 * 109.46869 * 61.87359 * 9 7 3 30 30 H 0.96997 * 119.99679 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2853 1.0949 0.0000 4 6 1.8295 2.4984 0.0005 5 8 0.6416 2.7510 0.0016 6 8 2.7313 3.4997 -0.0001 7 6 3.7172 0.6129 0.0024 8 6 4.4396 1.1026 1.2590 9 6 4.4388 1.1155 -1.2496 10 6 5.8515 0.5910 -1.2598 11 1 6.2000 -0.0375 -0.4536 12 6 6.6995 0.9145 -2.2978 13 7 7.9326 0.4571 -2.3063 14 14 6.0970 2.0021 -3.6917 15 1 6.3631 3.4249 -3.3599 16 1 6.8114 1.6439 -4.9433 17 1 4.6377 1.8023 -3.8802 18 8 3.6563 -0.8404 -0.0050 19 6 2.3599 -1.1997 -0.0064 20 8 1.9535 -2.3441 -0.0126 21 1 -0.3633 -1.0277 -0.0050 22 1 -0.3633 0.5182 -0.8875 23 1 -0.3633 0.5095 0.8925 24 1 2.3848 4.4025 0.0007 25 1 5.4572 0.7123 1.2685 26 1 4.4683 2.1923 1.2602 27 1 3.9078 0.7524 2.1437 28 1 3.9140 0.7630 -2.1375 29 1 4.4558 2.2053 -1.2463 30 1 8.5291 0.6844 -3.0367 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075617298.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:54 Heat of formation + Delta-G solvation = -149.559835 kcal Electronic energy + Delta-G solvation = -17677.692481 eV Core-core repulsion = 14632.026882 eV Total energy + Delta-G solvation = -3045.665599 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.088 amu Computer time = 3.95 seconds Orbital eigenvalues (eV) -41.53304 -39.92203 -37.47824 -36.30760 -34.31329 -33.54355 -31.77510 -28.47008 -27.60790 -25.20117 -23.76702 -22.06046 -20.38215 -19.42757 -17.97730 -17.18700 -16.70400 -16.15295 -15.54549 -15.52719 -14.78322 -14.42029 -14.10736 -13.38199 -13.29948 -13.23274 -12.85308 -12.43216 -12.34655 -11.80910 -11.67983 -11.47512 -11.41793 -11.01191 -10.79598 -10.63542 -10.25190 -10.14515 -9.92494 -9.34453 -9.21693 -8.64726 -6.13276 -4.12965 0.28262 2.37611 2.71143 2.98917 3.21569 3.30875 3.31715 3.43766 4.02556 4.17646 4.34745 4.88974 5.12120 5.20407 5.41236 5.48606 5.52799 5.56005 5.80587 6.00269 6.12149 6.22530 6.28805 6.64312 6.74150 6.89367 7.11777 7.55717 7.60971 7.73859 8.38729 8.91516 9.45515 10.99319 Molecular weight = 240.09amu Principal moments of inertia in cm(-1) A = 0.022868 B = 0.009825 C = 0.008129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.143291 B = 2849.089831 C = 3443.745890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.112 4.112 3 C -0.138 4.138 4 C 0.554 3.446 5 O -0.502 6.502 6 O -0.493 6.493 7 C 0.148 3.852 8 C -0.137 4.137 9 C -0.008 4.008 10 C -0.516 4.516 11 H 0.083 0.917 12 C 0.072 3.928 13 N -0.894 5.894 14 Si 0.873 3.127 15 H -0.274 1.274 16 H -0.285 1.285 17 H -0.268 1.268 18 O -0.280 6.280 19 C 0.498 3.502 20 O -0.455 6.455 21 H 0.079 0.921 22 H 0.087 0.913 23 H 0.086 0.914 24 H 0.416 0.584 25 H 0.095 0.905 26 H 0.084 0.916 27 H 0.047 0.953 28 H 0.024 0.976 29 H 0.049 0.951 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.900 6.170 5.301 14.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.115 4.115 3 C -0.140 4.140 4 C 0.398 3.602 5 O -0.391 6.391 6 O -0.304 6.304 7 C 0.111 3.889 8 C -0.194 4.194 9 C -0.045 4.045 10 C -0.554 4.554 11 H 0.101 0.899 12 C -0.130 4.130 13 N -0.533 5.533 14 Si 0.700 3.300 15 H -0.200 1.200 16 H -0.211 1.211 17 H -0.192 1.192 18 O -0.194 6.194 19 C 0.339 3.661 20 O -0.342 6.342 21 H 0.098 0.902 22 H 0.105 0.895 23 H 0.105 0.895 24 H 0.275 0.725 25 H 0.114 0.886 26 H 0.103 0.897 27 H 0.066 0.934 28 H 0.042 0.958 29 H 0.067 0.933 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.840 5.173 5.192 13.925 hybrid contribution -0.460 1.227 -0.928 1.606 sum -12.301 6.400 4.264 14.507 Atomic orbital electron populations 1.20565 0.87141 1.03836 1.03830 1.23361 0.98718 0.93310 0.96068 1.22047 0.98486 0.90922 1.02510 1.19648 0.83144 0.85066 0.72351 1.90888 1.17613 1.84876 1.45766 1.84694 1.41453 1.19186 1.85059 1.21989 0.89808 0.75340 1.01783 1.21939 1.02539 1.02409 0.92530 1.19932 0.97305 0.97527 0.89703 1.20876 0.93029 1.31984 1.09505 0.89869 1.24937 0.94724 0.95666 0.97647 1.69887 1.05731 1.44977 1.32657 0.86896 0.79399 0.81300 0.82428 1.19956 1.21107 1.19249 1.87636 1.24573 1.24943 1.82283 1.21016 0.82524 0.88691 0.73882 1.90831 1.76109 1.21630 1.45659 0.90220 0.89484 0.89533 0.72537 0.88642 0.89681 0.93366 0.95756 0.93333 0.92508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.23 8.99 36.01 0.32 -0.91 16 2 C -0.11 -1.79 6.26 -102.36 -0.64 -2.43 16 3 C -0.14 -2.23 5.00 -102.01 -0.51 -2.74 16 4 C 0.55 7.85 8.25 34.54 0.28 8.13 16 5 O -0.50 -7.43 16.16 -19.22 -0.31 -7.74 16 6 O -0.49 -5.76 11.48 -40.63 -0.47 -6.23 16 7 C 0.15 2.82 0.88 -91.59 -0.08 2.74 16 8 C -0.14 -2.30 8.63 37.15 0.32 -1.97 16 9 C -0.01 -0.17 3.29 -27.89 -0.09 -0.26 16 10 C -0.52 -13.78 8.69 -34.44 -0.30 -14.08 16 11 H 0.08 2.40 6.99 -52.49 -0.37 2.04 16 12 C 0.07 2.01 5.47 -17.81 -0.10 1.91 16 13 N -0.89 -26.53 13.96 55.43 0.77 -25.75 16 14 Si 0.87 20.62 27.47 -169.99 -4.67 15.95 16 15 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 16 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 18 O -0.28 -5.94 10.28 -39.66 -0.41 -6.35 16 19 C 0.50 9.55 8.56 34.37 0.29 9.84 16 20 O -0.46 -9.46 17.86 -18.88 -0.34 -9.80 16 21 H 0.08 0.94 7.98 -51.93 -0.41 0.53 16 22 H 0.09 1.06 7.99 -51.93 -0.41 0.64 16 23 H 0.09 0.99 8.01 -51.93 -0.42 0.57 16 24 H 0.42 2.54 9.11 45.56 0.42 2.95 16 25 H 0.09 1.78 6.72 -51.93 -0.35 1.43 16 26 H 0.08 1.28 7.27 -51.93 -0.38 0.90 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.02 0.56 7.20 -51.93 -0.37 0.19 16 29 H 0.05 1.02 6.60 -51.93 -0.34 0.68 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 266.31 15.07 4.01 4.01 Total: -1.00 -32.26 266.31 -4.13 -36.39 By element: Atomic # 1 Polarization: 1.51 SS G_CDS: -2.23 Total: -0.72 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: -0.50 Total: 0.23 kcal Atomic # 7 Polarization: -26.53 SS G_CDS: 0.77 Total: -25.75 kcal Atomic # 8 Polarization: -28.59 SS G_CDS: -1.52 Total: -30.11 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.67 Total: 15.95 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -32.26 -4.13 -36.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075617298.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.166 kcal (2) G-P(sol) polarization free energy of solvation -32.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.95 seconds